Wall clock time and date at job start Fri Apr 10 2020 18:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99916 * 2 1 4 4 H 1.48502 * 109.47212 * 240.00079 * 3 2 1 5 5 H 1.48495 * 109.47108 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46887 * 120.00087 * 3 2 1 7 7 C 1.38811 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00349 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99458 * 359.97438 * 7 2 1 10 10 C 1.47717 * 134.43246 * 179.97438 * 9 7 2 11 11 C 1.53284 * 85.90886 * 155.88179 * 10 9 7 12 12 C 1.47707 * 134.44499 * 0.04932 * 9 7 2 13 13 C 1.53769 * 114.70156 * 267.36146 * 11 10 9 14 14 C 1.55459 * 102.01281 * 250.22308 * 13 11 10 15 15 C 1.55002 * 101.02944 * 326.41501 * 14 13 11 16 16 H 1.08998 * 110.38544 * 277.11755 * 15 14 13 17 17 C 1.53006 * 110.29862 * 155.01025 * 15 14 13 18 18 N 1.46500 * 109.46998 * 182.79556 * 17 15 14 19 19 C 1.34769 * 120.00237 * 180.02562 * 18 17 15 20 20 O 1.21282 * 119.99854 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.00461 * 180.02562 * 19 18 17 22 22 H 1.09004 * 110.43236 * 61.08327 * 21 19 18 23 23 C 1.54619 * 110.48849 * 183.76991 * 21 19 18 24 24 C 1.54480 * 101.76724 * 143.47887 * 23 21 19 25 25 N 1.46770 * 105.46870 * 334.57996 * 24 23 21 26 26 C 1.34414 * 111.30242 * 17.02080 * 25 24 23 27 27 O 1.21277 * 124.94587 * 179.55497 * 26 25 24 28 28 O 1.42528 * 115.50913 * 140.19565 * 11 10 9 29 29 H 0.96997 * 119.99691 * 359.97438 * 1 2 3 30 30 H 1.08996 * 113.80170 * 41.63076 * 10 9 7 31 31 H 1.08998 * 113.79901 * 270.13252 * 10 9 7 32 32 H 1.09004 * 113.79936 * 89.86794 * 12 9 7 33 33 H 1.09004 * 113.79863 * 318.37098 * 12 9 7 34 34 H 1.08991 * 110.92620 * 8.40661 * 13 11 10 35 35 H 1.09003 * 110.91639 * 132.01436 * 13 11 10 36 36 H 1.09007 * 111.10675 * 208.47355 * 14 13 11 37 37 H 1.09004 * 111.10677 * 84.35854 * 14 13 11 38 38 H 1.08993 * 109.46955 * 302.79781 * 17 15 14 39 39 H 1.09000 * 109.47050 * 62.79610 * 17 15 14 40 40 H 0.97010 * 119.99909 * 359.97438 * 18 17 15 41 41 H 1.09009 * 110.96988 * 261.59496 * 23 21 19 42 42 H 1.08994 * 110.97313 * 25.35526 * 23 21 19 43 43 H 1.09003 * 110.24502 * 215.58665 * 24 23 21 44 44 H 1.08997 * 110.25359 * 93.57854 * 24 23 21 45 45 H 0.97007 * 124.34936 * 196.99121 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7219 -3.8110 -0.0015 11 6 0.3488 -4.0804 0.6242 12 6 -0.1048 -2.7564 -0.0010 13 6 0.3366 -4.1038 2.1617 14 6 0.0956 -5.6102 2.4604 15 6 -0.8131 -6.0071 1.2691 16 1 -1.8503 -5.7462 1.4793 17 6 -0.6908 -7.5055 0.9843 18 7 -1.5042 -7.8483 -0.1849 19 6 -1.5507 -9.1218 -0.6235 20 8 -0.9187 -9.9839 -0.0506 21 6 -2.3870 -9.4744 -1.8266 22 1 -2.0366 -8.9332 -2.7055 23 6 -2.3563 -10.9996 -2.0788 24 6 -3.7990 -11.2682 -2.5614 25 7 -4.6126 -10.1935 -1.9805 26 6 -3.8458 -9.1709 -1.5646 27 8 -4.2627 -8.1528 -1.0543 28 8 -0.3233 -5.2450 0.1516 29 1 -0.4849 0.8400 0.0004 30 1 2.5585 -4.0351 0.6603 31 1 1.8414 -4.2337 -0.9991 32 1 -0.5310 -2.8641 -0.9984 33 1 -0.7169 -2.1440 0.6612 34 1 1.2951 -3.7758 2.5636 35 1 -0.4771 -3.4936 2.5537 36 1 -0.4218 -5.7441 3.4105 37 1 1.0316 -6.1685 2.4433 38 1 0.3520 -7.7537 0.7869 39 1 -1.0412 -8.0694 1.8488 40 1 -2.0100 -7.1588 -0.6429 41 1 -1.6324 -11.2524 -2.8535 42 1 -2.1455 -11.5431 -1.1578 43 1 -4.1427 -12.2380 -2.2016 44 1 -3.8460 -11.2305 -3.6497 45 1 -5.5795 -10.2180 -1.9066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053640952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:08 Heat of formation + Delta-G solvation = -57.168750 kcal Electronic energy + Delta-G solvation = -27623.283438 eV Core-core repulsion = 23642.576821 eV Total energy + Delta-G solvation = -3980.706617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15598 -39.86214 -38.93658 -36.82480 -36.44378 -34.44704 -32.15332 -31.99673 -31.68548 -29.40550 -28.13425 -26.77303 -24.88932 -24.01188 -22.45848 -21.95509 -21.64303 -21.14682 -19.92248 -18.70246 -17.85773 -17.57551 -16.85237 -16.64282 -16.43586 -15.88400 -15.20670 -15.05414 -14.79680 -14.52834 -14.16363 -14.09881 -13.83726 -13.73789 -13.40219 -13.16328 -12.97241 -12.71624 -12.40715 -12.27435 -12.06733 -11.71422 -11.56567 -11.35682 -11.15720 -10.93123 -10.82535 -10.63770 -10.48004 -10.30746 -10.28677 -10.03067 -9.98589 -9.56063 -9.54343 -9.07211 -8.78382 -8.67252 -6.87921 -5.75978 -3.08521 2.06070 2.44603 2.89966 3.16168 3.40356 3.44152 3.45809 3.87257 3.95640 4.07495 4.45246 4.50281 4.54836 4.78934 4.81817 4.89257 4.94669 5.08815 5.15581 5.22340 5.33839 5.37687 5.41617 5.51495 5.61097 5.65713 5.71171 5.77105 5.96344 6.13835 6.29767 6.36885 6.38620 6.44125 6.53372 6.53910 6.62968 6.76999 7.07918 7.25985 7.45697 7.54293 7.75275 7.79836 7.98145 8.09709 9.05143 9.70984 10.60314 11.41289 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023651 B = 0.002489 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.604315 B =11247.040723 C =11708.306860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.221 4.221 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.118 3.882 11 C 0.056 3.944 12 C 0.165 3.835 13 C -0.112 4.112 14 C -0.148 4.148 15 C 0.066 3.934 16 H 0.076 0.924 17 C 0.124 3.876 18 N -0.705 5.705 19 C 0.530 3.470 20 O -0.543 6.543 21 C -0.152 4.152 22 H 0.138 0.862 23 C -0.117 4.117 24 C 0.099 3.901 25 N -0.729 5.729 26 C 0.529 3.471 27 O -0.515 6.515 28 O -0.365 6.365 29 H 0.255 0.745 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.414 0.586 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.812 -23.868 -2.102 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.333 5.333 10 C -0.008 4.008 11 C 0.016 3.984 12 C 0.039 3.961 13 C -0.150 4.150 14 C -0.186 4.186 15 C 0.008 3.992 16 H 0.094 0.906 17 C 0.001 3.999 18 N -0.356 5.356 19 C 0.314 3.686 20 O -0.421 6.421 21 C -0.177 4.177 22 H 0.156 0.844 23 C -0.155 4.155 24 C -0.026 4.026 25 N -0.386 5.386 26 C 0.313 3.687 27 O -0.390 6.390 28 O -0.283 6.283 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.250 0.750 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.452 -23.613 -1.626 24.814 hybrid contribution -0.180 1.304 -0.333 1.358 sum -7.632 -22.309 -1.959 23.659 Atomic orbital electron populations 1.69815 1.05000 1.25500 1.56399 1.24798 0.95694 0.97539 1.02401 0.86183 0.78454 0.83084 0.77929 1.21170 1.21548 1.21074 1.18921 0.90168 0.81615 1.44137 0.90197 1.45655 1.02352 0.99188 1.86113 1.22809 0.94058 0.86363 0.97575 1.24299 0.94597 0.85960 0.93554 1.22511 0.88149 0.87711 0.97696 1.22608 1.03652 0.94435 0.94263 1.23268 0.99995 0.97422 0.97916 1.23174 0.98398 0.90086 0.87545 0.90625 1.21602 0.96108 0.94097 0.88119 1.45883 1.48600 1.09498 1.31631 1.19675 0.81691 0.82782 0.84424 1.90694 1.45204 1.48136 1.58061 1.22184 0.94488 1.00561 1.00436 0.84415 1.22603 0.96016 0.92406 1.04468 1.22175 0.90779 0.90996 0.98602 1.46116 1.10086 1.19648 1.62736 1.20346 0.88191 0.82939 0.77246 1.90822 1.78406 1.26896 1.42873 1.88346 1.73940 1.36301 1.29700 0.93542 0.93687 0.94305 0.94964 0.90619 0.89750 0.90347 0.90157 0.90352 0.90657 0.90548 0.74967 0.88428 0.88089 0.89770 0.90576 0.74716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.50 11.39 55.49 0.63 -26.87 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.60 -15.85 3.67 -181.25 -0.67 -16.52 16 10 C 0.12 2.55 8.37 -3.23 -0.03 2.53 16 11 C 0.06 1.11 1.68 -90.04 -0.15 0.96 16 12 C 0.16 4.05 7.01 -3.24 -0.02 4.03 16 13 C -0.11 -1.89 6.32 -25.02 -0.16 -2.05 16 14 C -0.15 -1.93 6.58 -24.37 -0.16 -2.09 16 15 C 0.07 0.94 3.52 -25.67 -0.09 0.85 16 16 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 17 C 0.12 1.61 5.40 -4.04 -0.02 1.59 16 18 N -0.71 -9.23 5.18 -60.29 -0.31 -9.54 16 19 C 0.53 6.67 7.16 -10.99 -0.08 6.59 16 20 O -0.54 -8.12 15.52 5.56 0.09 -8.03 16 21 C -0.15 -1.36 3.33 -91.78 -0.31 -1.67 16 22 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 23 C -0.12 -0.71 6.45 -25.10 -0.16 -0.88 16 24 C 0.10 0.40 7.78 -3.12 -0.02 0.38 16 25 N -0.73 -4.86 6.24 -59.20 -0.37 -5.23 16 26 C 0.53 5.45 7.84 -10.86 -0.09 5.36 16 27 O -0.52 -7.31 16.85 5.56 0.09 -7.22 16 28 O -0.36 -6.51 10.67 -35.23 -0.38 -6.89 16 29 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.04 0.91 7.98 -51.93 -0.41 0.49 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 2.01 7.05 -51.93 -0.37 1.64 16 34 H 0.08 1.47 7.83 -51.93 -0.41 1.06 16 35 H 0.08 1.35 8.01 -51.93 -0.42 0.94 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.41 5.54 7.62 -40.82 -0.31 5.23 16 41 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.10 0.78 7.06 -51.93 -0.37 0.42 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.41 2.14 8.96 -40.82 -0.37 1.77 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -35.40 368.18 -8.77 -44.17 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.84 Total: 4.50 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -1.54 Total: 8.85 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.71 Total: -58.16 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.20 Total: -22.14 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.40 -8.77 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053640952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.000 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds