Wall clock time and date at job start Fri Apr 10 2020 18:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99916 * 2 1 4 4 H 1.48502 * 109.47212 * 240.00079 * 3 2 1 5 5 H 1.48495 * 109.47108 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46887 * 120.00087 * 3 2 1 7 7 C 1.38811 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00349 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99458 * 359.97438 * 7 2 1 10 10 C 1.47717 * 134.43246 * 179.97438 * 9 7 2 11 11 C 1.53284 * 85.90886 * 155.88179 * 10 9 7 12 12 C 1.47707 * 134.44499 * 0.04932 * 9 7 2 13 13 C 1.53769 * 114.70156 * 267.36146 * 11 10 9 14 14 C 1.55459 * 102.01281 * 250.22308 * 13 11 10 15 15 C 1.55002 * 101.02944 * 326.41501 * 14 13 11 16 16 H 1.08998 * 110.38544 * 277.11755 * 15 14 13 17 17 C 1.53006 * 110.29862 * 155.01025 * 15 14 13 18 18 N 1.46500 * 109.46998 * 182.79556 * 17 15 14 19 19 C 1.34769 * 120.00237 * 180.02562 * 18 17 15 20 20 O 1.21282 * 119.99854 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.00461 * 180.02562 * 19 18 17 22 22 H 1.09004 * 110.43236 * 61.08327 * 21 19 18 23 23 C 1.54619 * 110.48849 * 183.76991 * 21 19 18 24 24 C 1.54480 * 101.76724 * 143.47887 * 23 21 19 25 25 N 1.46770 * 105.46870 * 334.57996 * 24 23 21 26 26 C 1.34414 * 111.30242 * 17.02080 * 25 24 23 27 27 O 1.21277 * 124.94587 * 179.55497 * 26 25 24 28 28 O 1.42528 * 115.50913 * 140.19565 * 11 10 9 29 29 H 0.96997 * 119.99691 * 359.97438 * 1 2 3 30 30 H 1.08996 * 113.80170 * 41.63076 * 10 9 7 31 31 H 1.08998 * 113.79901 * 270.13252 * 10 9 7 32 32 H 1.09004 * 113.79936 * 89.86794 * 12 9 7 33 33 H 1.09004 * 113.79863 * 318.37098 * 12 9 7 34 34 H 1.08991 * 110.92620 * 8.40661 * 13 11 10 35 35 H 1.09003 * 110.91639 * 132.01436 * 13 11 10 36 36 H 1.09007 * 111.10675 * 208.47355 * 14 13 11 37 37 H 1.09004 * 111.10677 * 84.35854 * 14 13 11 38 38 H 1.08993 * 109.46955 * 302.79781 * 17 15 14 39 39 H 1.09000 * 109.47050 * 62.79610 * 17 15 14 40 40 H 0.97010 * 119.99909 * 359.97438 * 18 17 15 41 41 H 1.09009 * 110.96988 * 261.59496 * 23 21 19 42 42 H 1.08994 * 110.97313 * 25.35526 * 23 21 19 43 43 H 1.09003 * 110.24502 * 215.58665 * 24 23 21 44 44 H 1.08997 * 110.25359 * 93.57854 * 24 23 21 45 45 H 0.97007 * 124.34936 * 196.99121 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7219 -3.8110 -0.0015 11 6 0.3488 -4.0804 0.6242 12 6 -0.1048 -2.7564 -0.0010 13 6 0.3366 -4.1038 2.1617 14 6 0.0956 -5.6102 2.4604 15 6 -0.8131 -6.0071 1.2691 16 1 -1.8503 -5.7462 1.4793 17 6 -0.6908 -7.5055 0.9843 18 7 -1.5042 -7.8483 -0.1849 19 6 -1.5507 -9.1218 -0.6235 20 8 -0.9187 -9.9839 -0.0506 21 6 -2.3870 -9.4744 -1.8266 22 1 -2.0366 -8.9332 -2.7055 23 6 -2.3563 -10.9996 -2.0788 24 6 -3.7990 -11.2682 -2.5614 25 7 -4.6126 -10.1935 -1.9805 26 6 -3.8458 -9.1709 -1.5646 27 8 -4.2627 -8.1528 -1.0543 28 8 -0.3233 -5.2450 0.1516 29 1 -0.4849 0.8400 0.0004 30 1 2.5585 -4.0351 0.6603 31 1 1.8414 -4.2337 -0.9991 32 1 -0.5310 -2.8641 -0.9984 33 1 -0.7169 -2.1440 0.6612 34 1 1.2951 -3.7758 2.5636 35 1 -0.4771 -3.4936 2.5537 36 1 -0.4218 -5.7441 3.4105 37 1 1.0316 -6.1685 2.4433 38 1 0.3520 -7.7537 0.7869 39 1 -1.0412 -8.0694 1.8488 40 1 -2.0100 -7.1588 -0.6429 41 1 -1.6324 -11.2524 -2.8535 42 1 -2.1455 -11.5431 -1.1578 43 1 -4.1427 -12.2380 -2.2016 44 1 -3.8460 -11.2305 -3.6497 45 1 -5.5795 -10.2180 -1.9066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053640952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:07 Heat of formation + Delta-G solvation = -85.493106 kcal Electronic energy + Delta-G solvation = -27624.511674 eV Core-core repulsion = 23642.576821 eV Total energy + Delta-G solvation = -3981.934853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94077 -41.31820 -39.92971 -38.16392 -37.43565 -35.62534 -34.10976 -33.15850 -32.59849 -30.68568 -29.16965 -28.26133 -26.75786 -25.35691 -23.69931 -22.93129 -22.55525 -22.36545 -20.82227 -20.35472 -18.79709 -18.60567 -18.29927 -17.80734 -17.40065 -17.03505 -16.93857 -16.35461 -15.91128 -15.73303 -15.52527 -15.30409 -14.88912 -14.74243 -14.56649 -14.31784 -14.16693 -13.95713 -13.59868 -13.39331 -13.33768 -12.97984 -12.81815 -12.75973 -12.64201 -12.48241 -12.28826 -12.11022 -12.05180 -11.86446 -11.65995 -11.52780 -11.15871 -10.95740 -10.86223 -10.27542 -10.13383 -10.08918 -8.98130 -7.92582 -5.27692 1.24580 1.44915 1.49015 1.55200 1.55603 2.10979 2.42358 2.46197 2.77257 3.25339 3.26069 3.36939 3.42944 3.58138 3.68123 3.74701 3.83854 3.90004 4.04608 4.13878 4.18791 4.41583 4.51115 4.56041 4.59645 4.72752 4.80535 4.81647 4.89401 4.94045 4.98412 5.02337 5.09108 5.16256 5.18365 5.22261 5.33228 5.38946 5.47801 5.75120 5.86729 5.92887 6.23806 6.44372 6.87812 7.07955 7.15243 7.56778 8.51995 9.24500 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023651 B = 0.002489 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.604315 B =11247.040723 C =11708.306860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.067 4.067 3 Si 0.984 3.016 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.236 4.236 8 H 0.088 0.912 9 N -0.629 5.629 10 C 0.118 3.882 11 C 0.080 3.920 12 C 0.159 3.841 13 C -0.112 4.112 14 C -0.131 4.131 15 C 0.064 3.936 16 H 0.078 0.922 17 C 0.129 3.871 18 N -0.711 5.711 19 C 0.525 3.475 20 O -0.569 6.569 21 C -0.151 4.151 22 H 0.156 0.844 23 C -0.113 4.113 24 C 0.101 3.899 25 N -0.717 5.717 26 C 0.520 3.480 27 O -0.565 6.565 28 O -0.375 6.375 29 H 0.249 0.751 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.007 0.993 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.411 0.589 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.251 -26.045 -2.055 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.811 3.189 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.364 4.364 8 H 0.105 0.895 9 N -0.358 5.358 10 C -0.007 4.007 11 C 0.040 3.960 12 C 0.033 3.967 13 C -0.149 4.149 14 C -0.168 4.168 15 C 0.006 3.994 16 H 0.096 0.904 17 C 0.006 3.994 18 N -0.361 5.361 19 C 0.311 3.689 20 O -0.449 6.449 21 C -0.175 4.175 22 H 0.173 0.827 23 C -0.151 4.151 24 C -0.022 4.022 25 N -0.372 5.372 26 C 0.304 3.696 27 O -0.444 6.444 28 O -0.294 6.294 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.247 0.753 41 H 0.138 0.862 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -6.887 -25.872 -1.599 26.821 hybrid contribution -0.393 1.870 -0.405 1.954 sum -7.280 -24.002 -2.004 25.161 Atomic orbital electron populations 1.70026 1.06582 1.25835 1.57778 1.25702 0.96596 1.01070 1.02631 0.85083 0.77092 0.78341 0.78382 1.20398 1.22031 1.19763 1.19363 0.90853 0.82815 1.43331 0.89473 1.45975 1.03173 1.00493 1.86144 1.22920 0.95805 0.83875 0.98079 1.23784 0.92666 0.84545 0.95042 1.22403 0.87419 0.90616 0.96257 1.22571 1.03275 0.97356 0.91734 1.23252 1.00797 0.94144 0.98657 1.23369 0.98700 0.90360 0.86964 0.90368 1.21549 0.96030 0.93074 0.88777 1.46010 1.48511 1.09886 1.31730 1.20253 0.81498 0.82114 0.85042 1.90674 1.46456 1.48621 1.59165 1.22264 0.93068 1.02910 0.99261 0.82705 1.22664 0.98108 0.89749 1.04537 1.22428 0.88858 0.90944 1.00013 1.46179 1.10668 1.19170 1.61231 1.20607 0.89030 0.82923 0.76995 1.90791 1.79241 1.28988 1.45398 1.88327 1.73763 1.35697 1.31592 0.94166 0.91590 0.94419 0.97545 0.93354 0.90021 0.91100 0.87063 0.88773 0.91023 0.89186 0.75273 0.86158 0.89778 0.87410 0.87926 0.73832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.89 11.39 21.65 0.25 -58.64 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.24 -13.52 10.70 84.03 0.90 -12.62 16 8 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 9 N -0.63 -33.70 3.67 -732.66 -2.69 -36.39 16 10 C 0.12 5.10 8.37 86.24 0.72 5.82 16 11 C 0.08 3.19 1.68 -10.30 -0.02 3.17 16 12 C 0.16 8.15 7.01 86.24 0.60 8.76 16 13 C -0.11 -3.67 6.32 31.70 0.20 -3.47 16 14 C -0.13 -3.08 6.58 32.13 0.21 -2.87 16 15 C 0.06 1.72 3.52 31.28 0.11 1.83 16 16 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 17 C 0.13 3.19 5.40 86.38 0.47 3.65 16 18 N -0.71 -18.33 5.18 -463.06 -2.40 -20.73 16 19 C 0.53 12.87 7.16 87.66 0.63 13.50 16 20 O -0.57 -16.58 15.52 -3.04 -0.05 -16.63 16 21 C -0.15 -2.52 3.33 -11.55 -0.04 -2.55 16 22 H 0.16 1.99 8.14 -2.38 -0.02 1.98 16 23 C -0.11 -1.11 6.45 31.65 0.20 -0.91 16 24 C 0.10 0.49 7.78 86.83 0.68 1.16 16 25 N -0.72 -8.19 6.24 -459.80 -2.87 -11.06 16 26 C 0.52 10.33 7.84 87.90 0.69 11.02 16 27 O -0.57 -16.31 16.85 -3.02 -0.05 -16.36 16 28 O -0.38 -13.33 10.67 -148.98 -1.59 -14.92 16 29 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 30 H 0.07 2.56 7.98 -2.39 -0.02 2.55 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.05 2.71 7.05 -2.38 -0.02 2.69 16 34 H 0.08 2.75 7.83 -2.39 -0.02 2.73 16 35 H 0.07 2.44 8.01 -2.39 -0.02 2.42 16 36 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.09 1.99 8.05 -2.38 -0.02 1.97 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.41 11.13 7.62 -92.70 -0.71 10.43 16 41 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.08 1.17 7.06 -2.39 -0.02 1.15 16 43 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.42 3.62 8.96 -92.70 -0.83 2.79 16 Total: -1.00 -79.73 368.18 -2.06 -81.79 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.51 Total: 21.60 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 5.82 Total: 23.06 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -7.71 Total: -126.82 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -1.69 Total: -47.92 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -79.73 -2.06 -81.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053640952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.700 kcal (2) G-P(sol) polarization free energy of solvation -79.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds