Wall clock time and date at job start Fri Apr 10 2020 18:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99799 * 2 1 4 4 H 1.48500 * 109.47180 * 269.99499 * 3 2 1 5 5 H 1.48500 * 109.47165 * 29.99906 * 3 2 1 6 6 H 1.48499 * 109.47111 * 149.99983 * 3 2 1 7 7 C 1.38811 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99970 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99667 * 0.02562 * 7 2 1 10 10 C 1.47709 * 134.43782 * 180.02562 * 9 7 2 11 11 C 1.53279 * 85.91470 * 155.82417 * 10 9 7 12 12 C 1.47716 * 134.44148 * 359.96957 * 9 7 2 13 13 C 1.53822 * 114.66660 * 267.35230 * 11 10 9 14 14 C 1.55461 * 101.98912 * 250.20336 * 13 11 10 15 15 H 1.09003 * 111.10341 * 84.40756 * 14 13 11 16 16 N 1.46499 * 111.11128 * 208.48976 * 14 13 11 17 17 C 1.34777 * 119.99665 * 201.82225 * 16 14 13 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 14 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 14 20 20 N 1.46509 * 109.47002 * 179.97438 * 19 17 16 21 21 C 1.46757 * 124.34728 * 269.72205 * 20 19 17 22 22 C 1.54662 * 105.38256 * 162.85307 * 21 20 19 23 23 C 1.54630 * 101.68135 * 25.76508 * 22 21 20 24 24 C 1.34419 * 124.34676 * 90.02045 * 20 19 17 25 25 O 1.21272 * 124.94800 * 0.43112 * 24 20 19 26 26 C 1.55003 * 101.06111 * 326.45011 * 14 13 11 27 27 O 1.42523 * 115.51147 * 140.19619 * 11 10 9 28 28 H 0.96997 * 119.99831 * 0.02562 * 1 2 3 29 29 H 1.09007 * 113.80440 * 41.57032 * 10 9 7 30 30 H 1.08999 * 113.90748 * 270.08709 * 10 9 7 31 31 H 1.08996 * 113.79967 * 89.92430 * 12 9 7 32 32 H 1.09004 * 113.79748 * 318.43422 * 12 9 7 33 33 H 1.08995 * 110.91062 * 132.04441 * 13 11 10 34 34 H 1.09006 * 110.95959 * 8.38555 * 13 11 10 35 35 H 0.97001 * 119.99790 * 21.53938 * 16 14 13 36 36 H 1.09003 * 109.47112 * 299.99065 * 19 17 16 37 37 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 38 38 H 1.09000 * 110.25028 * 281.98578 * 21 20 19 39 39 H 1.09001 * 110.24666 * 43.98416 * 21 20 19 40 40 H 1.09001 * 111.19027 * 267.59789 * 22 21 20 41 41 H 1.08991 * 110.82394 * 143.77868 * 22 21 20 42 42 H 1.09003 * 110.48637 * 216.30599 * 23 22 21 43 43 H 1.09005 * 110.59350 * 93.72318 * 23 22 21 44 44 H 1.09003 * 110.30389 * 154.99077 * 26 14 13 45 45 H 1.08996 * 110.30422 * 277.14326 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.7220 -3.8109 0.0015 11 6 0.3485 -4.0797 0.6267 12 6 -0.1048 -2.7564 0.0006 13 6 0.3364 -4.1014 2.1647 14 6 0.0949 -5.6076 2.4645 15 1 1.0309 -6.1660 2.4485 16 7 -0.6009 -5.7865 3.7412 17 6 -0.5209 -6.9634 4.3931 18 8 0.1228 -7.8760 3.9201 19 6 -1.2316 -7.1454 5.7094 20 7 -0.9918 -8.5011 6.2106 21 6 -1.8452 -9.6572 5.9123 22 6 -0.9913 -10.8984 6.2619 23 6 -0.0218 -10.3235 7.3205 24 6 0.0350 -8.8446 7.0072 25 8 0.8832 -8.0801 7.4157 26 6 -0.8132 -6.0060 1.2732 27 8 -0.3232 -5.2448 0.1551 28 1 -0.4850 0.8400 -0.0004 29 1 2.5583 -4.0343 0.6640 30 1 1.8427 -4.2365 -0.9947 31 1 -0.5311 -2.8648 -0.9966 32 1 -0.7168 -2.1435 0.6624 33 1 -0.4776 -3.4912 2.5560 34 1 1.2950 -3.7733 2.5668 35 1 -1.1157 -5.0565 4.1194 36 1 -0.8540 -6.4195 6.4296 37 1 -2.3018 -6.9946 5.5686 38 1 -2.7453 -9.6300 6.5263 39 1 -2.1093 -9.6682 4.8548 40 1 -0.4467 -11.2603 5.3899 41 1 -1.6109 -11.6874 6.6881 42 1 0.9657 -10.7735 7.2177 43 1 -0.4113 -10.4859 8.3255 44 1 -0.7257 -7.0736 1.0714 45 1 -1.8501 -5.7439 1.4838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053732859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:26 Heat of formation + Delta-G solvation = -43.792586 kcal Electronic energy + Delta-G solvation = -27520.271950 eV Core-core repulsion = 23540.145367 eV Total energy + Delta-G solvation = -3980.126583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90500 -40.10206 -39.00366 -36.65278 -36.26636 -34.56984 -33.26018 -32.09723 -30.52517 -28.32067 -27.89884 -27.40392 -25.67309 -24.95759 -22.46817 -22.11401 -21.88426 -20.80762 -19.70810 -18.77901 -17.82974 -17.20086 -16.83194 -16.67095 -16.25786 -15.78016 -15.31027 -15.06364 -14.85979 -14.81531 -14.21479 -14.03915 -13.90991 -13.70214 -13.41812 -13.28968 -13.01698 -12.90817 -12.67867 -12.32033 -12.17876 -11.83756 -11.63053 -11.41639 -11.38687 -11.10248 -10.91751 -10.78836 -10.70489 -10.39045 -10.30049 -10.09759 -10.05343 -9.58971 -9.18363 -9.04557 -8.82132 -8.72176 -6.92737 -5.80361 -3.12782 2.19499 2.41687 2.54541 3.10512 3.37878 3.42813 3.44535 3.98548 4.09513 4.19146 4.41484 4.47373 4.49375 4.63786 4.72653 4.76586 4.91191 5.04007 5.06947 5.11515 5.15804 5.26159 5.32292 5.32991 5.34705 5.43193 5.52866 5.61993 5.84723 5.88562 6.03078 6.13473 6.24991 6.33776 6.46047 6.58474 6.67544 6.73833 7.01233 7.19551 7.30790 7.48335 7.68024 7.86274 7.93612 8.03572 9.01287 9.66945 10.55314 11.37115 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024882 B = 0.002410 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.049156 B =11614.477061 C =12130.545774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.220 4.220 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.117 3.883 11 C 0.055 3.945 12 C 0.166 3.834 13 C -0.117 4.117 14 C 0.108 3.892 15 H 0.104 0.896 16 N -0.714 5.714 17 C 0.495 3.505 18 O -0.529 6.529 19 C 0.107 3.893 20 N -0.605 5.605 21 C 0.104 3.896 22 C -0.130 4.130 23 C -0.153 4.153 24 C 0.522 3.478 25 O -0.529 6.529 26 C 0.046 3.954 27 O -0.365 6.365 28 H 0.254 0.746 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.404 0.596 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 -20.599 14.398 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.333 5.333 10 C -0.009 4.009 11 C 0.014 3.986 12 C 0.040 3.960 13 C -0.155 4.155 14 C 0.003 3.997 15 H 0.122 0.878 16 N -0.368 5.368 17 C 0.279 3.721 18 O -0.404 6.404 19 C -0.019 4.019 20 N -0.339 5.339 21 C -0.018 4.018 22 C -0.168 4.168 23 C -0.193 4.193 24 C 0.310 3.690 25 O -0.405 6.405 26 C -0.033 4.033 27 O -0.283 6.283 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.239 0.761 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.099 0.901 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.769 -20.506 14.040 26.038 hybrid contribution 0.140 1.421 0.047 1.429 sum -7.629 -19.085 14.087 24.918 Atomic orbital electron populations 1.69817 1.05015 1.25413 1.56594 1.24794 0.95713 0.97562 1.02375 0.86097 0.78619 0.83281 0.77639 1.21561 1.21609 1.20576 1.18984 0.90253 0.81539 1.43925 0.90062 1.45681 1.02283 0.99217 1.86153 1.22831 0.93849 0.86377 0.97855 1.24223 0.95221 0.86628 0.92486 1.22503 0.88265 0.87385 0.97809 1.22867 1.04320 0.93132 0.95211 1.22813 0.96509 0.97797 0.82557 0.87838 1.45858 1.53104 1.14998 1.22804 1.21211 0.81552 0.82656 0.86656 1.90716 1.41025 1.40787 1.67894 1.21193 1.01616 0.84976 0.94122 1.47797 1.28264 1.08354 1.49491 1.22149 0.93266 0.84392 1.02022 1.22609 0.97774 0.96939 0.99456 1.22301 1.02830 0.93061 1.01098 1.20952 0.79956 0.90814 0.77265 1.90743 1.37420 1.57720 1.54575 1.23634 0.96968 0.96493 0.86177 1.88401 1.74102 1.36324 1.29442 0.93589 0.93477 0.93919 0.94718 0.90538 0.89779 0.89068 0.76129 0.86808 0.87034 0.90774 0.90133 0.89623 0.89114 0.87914 0.87781 0.90068 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 11.39 55.49 0.63 -26.39 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.65 3.67 -181.27 -0.67 -16.32 16 10 C 0.12 2.53 8.37 -3.24 -0.03 2.50 16 11 C 0.06 1.08 1.68 -90.03 -0.15 0.93 16 12 C 0.17 3.98 7.01 -3.25 -0.02 3.96 16 13 C -0.12 -1.91 5.97 -25.00 -0.15 -2.06 16 14 C 0.11 1.52 3.43 -65.57 -0.22 1.30 16 15 H 0.10 1.64 7.64 -51.93 -0.40 1.24 16 16 N -0.71 -7.82 5.22 -51.52 -0.27 -8.09 16 17 C 0.49 5.85 7.90 -10.99 -0.09 5.76 16 18 O -0.53 -8.39 16.12 5.55 0.09 -8.30 16 19 C 0.11 0.89 6.41 -5.19 -0.03 0.85 16 20 N -0.61 -5.52 2.42 -173.67 -0.42 -5.94 16 21 C 0.10 0.59 7.35 -3.03 -0.02 0.57 16 22 C -0.13 -0.63 7.19 -25.00 -0.18 -0.81 16 23 C -0.15 -1.04 6.86 -26.74 -0.18 -1.22 16 24 C 0.52 5.92 8.02 -10.86 -0.09 5.83 16 25 O -0.53 -8.39 17.59 5.56 0.10 -8.30 16 26 C 0.05 0.67 7.49 38.22 0.29 0.95 16 27 O -0.37 -6.78 11.14 -35.23 -0.39 -7.17 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.05 0.95 7.98 -51.93 -0.41 0.54 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.95 7.05 -51.93 -0.37 1.58 16 33 H 0.08 1.30 7.85 -51.93 -0.41 0.89 16 34 H 0.09 1.57 7.83 -51.93 -0.41 1.16 16 35 H 0.40 3.29 8.53 -40.82 -0.35 2.94 16 36 H 0.11 0.93 7.92 -51.93 -0.41 0.51 16 37 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -37.15 372.82 -8.42 -45.57 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.95 Total: 0.36 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -1.14 Total: 11.94 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.72 Total: -56.74 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.20 Total: -23.77 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.15 -8.42 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053732859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.776 kcal (2) G-P(sol) polarization free energy of solvation -37.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds