Wall clock time and date at job start Fri Apr 10 2020 18:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48500 * 109.46847 * 274.98411 * 3 2 1 5 5 H 1.48495 * 109.47098 * 34.98396 * 3 2 1 6 6 H 1.48490 * 109.46908 * 154.98515 * 3 2 1 7 7 C 1.38808 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99992 * 186.75106 * 7 2 1 9 9 N 1.36935 * 120.00141 * 6.74127 * 7 2 1 10 10 C 1.47483 * 125.68679 * 173.76703 * 9 7 2 11 11 C 1.55396 * 104.78538 * 155.60213 * 10 9 7 12 12 H 1.08997 * 113.09954 * 157.53843 * 11 10 9 13 13 O 1.42769 * 107.09130 * 281.68957 * 11 10 9 14 14 C 1.42659 * 115.68873 * 166.04717 * 13 11 10 15 15 C 1.53984 * 108.29309 * 295.41336 * 14 13 11 16 16 N 1.47048 * 107.12422 * 55.84271 * 15 14 13 17 17 C 1.34780 * 120.11489 * 130.15298 * 16 15 14 18 18 O 1.21281 * 119.99590 * 179.72567 * 17 16 15 19 19 C 1.50700 * 120.00178 * 359.73304 * 17 16 15 20 20 C 1.52999 * 109.46804 * 179.97438 * 19 17 16 21 21 H 1.09001 * 110.43813 * 56.08713 * 20 19 17 22 22 C 1.54858 * 110.48831 * 178.74835 * 20 19 17 23 23 C 1.54482 * 101.66300 * 93.87773 * 22 20 19 24 24 N 1.46766 * 105.54605 * 25.43456 * 23 22 20 25 25 C 1.34428 * 111.30097 * 342.94129 * 24 23 22 26 26 O 1.21275 * 124.94054 * 180.38379 * 25 24 23 27 27 C 1.45658 * 119.76568 * 309.88509 * 16 15 14 28 28 H 1.09001 * 109.96061 * 165.75882 * 27 16 15 29 29 C 1.48450 * 125.56280 * 354.55010 * 9 7 2 30 30 H 0.96994 * 120.00059 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.38139 * 36.77595 * 10 9 7 32 32 H 1.09002 * 110.37779 * 274.42693 * 10 9 7 33 33 H 1.09004 * 109.67890 * 55.26901 * 14 13 11 34 34 H 1.08996 * 109.67864 * 175.78178 * 14 13 11 35 35 H 1.09007 * 110.04808 * 296.42710 * 15 14 13 36 36 H 1.08996 * 109.94431 * 175.20689 * 15 14 13 37 37 H 1.08996 * 109.47091 * 59.99637 * 19 17 16 38 38 H 1.09007 * 109.46765 * 299.99429 * 19 17 16 39 39 H 1.09003 * 111.04084 * 335.78688 * 22 20 19 40 40 H 1.09000 * 110.99806 * 211.95397 * 22 20 19 41 41 H 1.08993 * 110.24796 * 266.39445 * 23 22 20 42 42 H 1.08993 * 110.24914 * 144.47275 * 23 22 20 43 43 H 0.97001 * 124.35232 * 162.95633 * 24 23 22 44 44 H 1.09001 * 110.71186 * 62.21558 * 29 9 7 45 45 H 1.08995 * 109.81504 * 300.57910 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0847 -1.2053 0.1105 9 7 1.3327 -2.3840 -0.1381 10 6 1.9480 -3.7164 -0.2843 11 6 0.8653 -4.7106 0.2199 12 1 0.9962 -5.7197 -0.1707 13 8 0.8955 -4.6757 1.6468 14 6 -0.2189 -5.2770 2.3039 15 6 -1.4808 -4.4665 1.9547 16 7 -1.5800 -4.4302 0.4881 17 6 -2.7390 -4.7531 -0.1195 18 8 -2.8199 -4.7176 -1.3291 19 6 -3.9343 -5.1579 0.7041 20 6 -5.1107 -5.4695 -0.2232 21 1 -4.8323 -6.2357 -0.9468 22 6 -6.3441 -5.9190 0.5982 23 6 -7.1039 -4.5857 0.7756 24 7 -6.6931 -3.7454 -0.3554 25 6 -5.5731 -4.2154 -0.9315 26 8 -5.0150 -3.7080 -1.8811 27 6 -0.4231 -4.0385 -0.3055 28 1 -0.5819 -4.3036 -1.3508 29 6 -0.1436 -2.5327 -0.1825 30 1 -0.4850 0.8400 -0.0004 31 1 2.8455 -3.7894 0.3297 32 1 2.1855 -3.9122 -1.3299 33 1 -0.3343 -6.3061 1.9634 34 1 -0.0608 -5.2627 3.3822 35 1 -1.3937 -3.4526 2.3455 36 1 -2.3621 -4.9517 2.3740 37 1 -4.2065 -4.3427 1.3745 38 1 -3.6886 -6.0436 1.2901 39 1 -6.0439 -6.3282 1.5629 40 1 -6.9436 -6.6385 0.0405 41 1 -6.8235 -4.1142 1.7173 42 1 -8.1798 -4.7579 0.7462 43 1 -7.1684 -2.9525 -0.6492 44 1 -0.5585 -2.0059 -1.0418 45 1 -0.5817 -2.1469 0.7380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083103950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:15 Heat of formation + Delta-G solvation = -62.931397 kcal Electronic energy + Delta-G solvation = -29170.266432 eV Core-core repulsion = 25189.309928 eV Total energy + Delta-G solvation = -3980.956504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.78702 -39.89135 -38.04004 -36.31586 -35.58555 -34.46481 -32.94658 -32.12572 -29.71506 -29.26069 -27.75530 -27.23376 -25.88949 -24.15733 -23.14437 -22.00623 -20.95451 -20.32137 -19.77461 -18.31455 -17.49038 -17.03618 -16.82444 -16.47604 -16.11150 -15.71041 -15.18793 -14.83527 -14.62516 -14.49065 -14.16369 -13.79020 -13.68757 -13.57784 -13.13016 -12.93215 -12.82031 -12.60691 -12.23468 -12.16949 -11.97280 -11.85640 -11.48330 -11.18710 -11.07408 -10.98772 -10.87208 -10.72052 -10.50425 -10.10088 -9.87713 -9.71039 -9.61627 -9.54811 -9.23952 -9.12936 -8.52824 -7.99746 -6.77172 -5.64228 -2.97189 2.73016 2.95982 3.20547 3.32683 3.45997 3.50734 3.52881 4.09830 4.17664 4.20955 4.46664 4.56241 4.65826 4.85346 4.97543 5.02595 5.13263 5.16624 5.21687 5.24228 5.35126 5.36294 5.48673 5.53107 5.54366 5.57389 5.67215 5.82056 5.84533 5.89119 6.02172 6.11681 6.45219 6.59307 6.64515 6.80864 6.84796 7.01506 7.53042 7.63016 7.69179 7.80962 7.88628 8.28011 8.39120 8.55962 9.25020 9.87263 10.52844 11.47889 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014686 B = 0.004037 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.171908 B = 6933.940901 C = 8035.245552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.143 3.857 11 C 0.067 3.933 12 H 0.071 0.929 13 O -0.361 6.361 14 C 0.052 3.948 15 C 0.072 3.928 16 N -0.598 5.598 17 C 0.499 3.501 18 O -0.508 6.508 19 C -0.122 4.122 20 C -0.108 4.108 21 H 0.111 0.889 22 C -0.130 4.130 23 C 0.102 3.898 24 N -0.744 5.744 25 C 0.515 3.485 26 O -0.488 6.488 27 C 0.086 3.914 28 H 0.100 0.900 29 C 0.183 3.817 30 H 0.251 0.749 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.408 0.592 44 H 0.050 0.950 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.855 -16.070 7.765 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.016 3.984 11 C 0.008 3.992 12 H 0.089 0.911 13 O -0.279 6.279 14 C -0.026 4.026 15 C -0.052 4.052 16 N -0.332 5.332 17 C 0.286 3.714 18 O -0.382 6.382 19 C -0.163 4.163 20 C -0.131 4.131 21 H 0.129 0.871 22 C -0.168 4.168 23 C -0.023 4.023 24 N -0.402 5.402 25 C 0.299 3.701 26 O -0.359 6.359 27 C -0.018 4.018 28 H 0.118 0.882 29 C 0.058 3.942 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.246 0.754 44 H 0.068 0.932 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.403 -15.555 6.725 21.606 hybrid contribution -0.194 1.210 0.030 1.226 sum -13.597 -14.344 6.755 20.887 Atomic orbital electron populations 1.69975 1.04920 1.24959 1.56883 1.24810 0.95652 0.97620 1.02308 0.86112 0.78620 0.83678 0.77462 1.21668 1.21896 1.20627 1.19056 0.91016 0.82330 1.42875 0.90265 1.44639 1.01081 1.00954 1.86039 1.21661 0.94214 0.85371 0.97106 1.23792 0.96905 0.97577 0.80968 0.91146 1.87900 1.41896 1.79592 1.18498 1.22907 0.86723 0.94993 0.97999 1.22577 0.99199 1.02486 0.80887 1.47600 1.11624 1.67488 1.06500 1.20505 0.83806 0.78192 0.88888 1.90828 1.82426 1.51284 1.13666 1.21559 0.92735 1.03626 0.98365 1.21759 0.94745 0.98121 0.98432 0.87070 1.22736 0.95791 0.96840 1.01460 1.21996 0.99617 0.90983 0.89712 1.46279 1.29205 1.30769 1.33955 1.20703 0.80056 0.85929 0.83431 1.90873 1.56959 1.62064 1.25969 1.22644 0.83917 0.99413 0.95863 0.88216 1.21436 0.84468 0.86836 1.01446 0.93828 0.92710 0.94715 0.93461 0.88308 0.89854 0.89585 0.88767 0.87964 0.88984 0.89699 0.91257 0.90525 0.75363 0.93215 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.34 10.37 55.49 0.58 -27.76 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.89 29.56 -169.99 -5.02 17.87 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.22 -6.49 10.27 -15.06 -0.15 -6.64 16 8 H 0.08 2.20 7.84 -52.48 -0.41 1.79 16 9 N -0.60 -16.05 3.43 -168.97 -0.58 -16.63 16 10 C 0.14 3.10 6.80 -2.23 -0.02 3.09 16 11 C 0.07 1.26 4.13 -24.66 -0.10 1.16 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 13 O -0.36 -6.67 10.11 -35.23 -0.36 -7.03 16 14 C 0.05 0.69 7.04 37.67 0.27 0.96 16 15 C 0.07 0.99 6.31 -3.23 -0.02 0.97 16 16 N -0.60 -10.42 2.71 -164.39 -0.45 -10.87 16 17 C 0.50 8.53 7.45 -10.98 -0.08 8.45 16 18 O -0.51 -10.96 13.09 -16.69 -0.22 -11.18 16 19 C -0.12 -1.34 3.47 -27.88 -0.10 -1.44 16 20 C -0.11 -1.17 2.57 -90.51 -0.23 -1.41 16 21 H 0.11 1.30 8.02 -51.93 -0.42 0.89 16 22 C -0.13 -0.76 6.72 -24.97 -0.17 -0.93 16 23 C 0.10 0.63 7.78 -3.12 -0.02 0.60 16 24 N -0.74 -7.67 6.24 -59.20 -0.37 -8.04 16 25 C 0.51 7.61 7.39 -10.86 -0.08 7.53 16 26 O -0.49 -10.24 15.86 -16.68 -0.26 -10.51 16 27 C 0.09 1.80 3.03 -67.25 -0.20 1.60 16 28 H 0.10 2.22 7.06 -51.93 -0.37 1.86 16 29 C 0.18 4.79 5.09 -2.63 -0.01 4.77 16 30 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.35 7.59 -51.92 -0.39 0.96 16 36 H 0.09 0.79 5.95 -51.93 -0.31 0.48 16 37 H 0.09 0.95 7.99 -51.93 -0.41 0.53 16 38 H 0.10 0.74 7.61 -51.93 -0.40 0.35 16 39 H 0.09 0.33 7.91 -51.93 -0.41 -0.08 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.41 3.82 8.96 -40.82 -0.37 3.45 16 44 H 0.05 1.50 7.46 -51.93 -0.39 1.11 16 45 H 0.05 1.44 6.65 -51.93 -0.35 1.09 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -39.65 352.71 -9.13 -48.77 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.73 Total: 1.69 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: -1.02 Total: 18.37 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.82 Total: -63.30 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.84 Total: -28.72 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -39.65 -9.13 -48.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083103950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.158 kcal (2) G-P(sol) polarization free energy of solvation -39.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds