Wall clock time and date at job start Fri Apr 10 2020 18:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48500 * 109.46847 * 274.98411 * 3 2 1 5 5 H 1.48495 * 109.47098 * 34.98396 * 3 2 1 6 6 H 1.48490 * 109.46908 * 154.98515 * 3 2 1 7 7 C 1.38808 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99992 * 186.75106 * 7 2 1 9 9 N 1.36935 * 120.00141 * 6.74127 * 7 2 1 10 10 C 1.47483 * 125.68679 * 173.76703 * 9 7 2 11 11 C 1.55396 * 104.78538 * 155.60213 * 10 9 7 12 12 H 1.08997 * 113.09954 * 157.53843 * 11 10 9 13 13 O 1.42769 * 107.09130 * 281.68957 * 11 10 9 14 14 C 1.42659 * 115.68873 * 166.04717 * 13 11 10 15 15 C 1.53984 * 108.29309 * 295.41336 * 14 13 11 16 16 N 1.47048 * 107.12422 * 55.84271 * 15 14 13 17 17 C 1.34780 * 120.11489 * 130.15298 * 16 15 14 18 18 O 1.21281 * 119.99590 * 179.72567 * 17 16 15 19 19 C 1.50700 * 120.00178 * 359.73304 * 17 16 15 20 20 C 1.52999 * 109.46804 * 179.97438 * 19 17 16 21 21 H 1.09001 * 110.43813 * 56.08713 * 20 19 17 22 22 C 1.54858 * 110.48831 * 178.74835 * 20 19 17 23 23 C 1.54482 * 101.66300 * 93.87773 * 22 20 19 24 24 N 1.46766 * 105.54605 * 25.43456 * 23 22 20 25 25 C 1.34428 * 111.30097 * 342.94129 * 24 23 22 26 26 O 1.21275 * 124.94054 * 180.38379 * 25 24 23 27 27 C 1.45658 * 119.76568 * 309.88509 * 16 15 14 28 28 H 1.09001 * 109.96061 * 165.75882 * 27 16 15 29 29 C 1.48450 * 125.56280 * 354.55010 * 9 7 2 30 30 H 0.96994 * 120.00059 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.38139 * 36.77595 * 10 9 7 32 32 H 1.09002 * 110.37779 * 274.42693 * 10 9 7 33 33 H 1.09004 * 109.67890 * 55.26901 * 14 13 11 34 34 H 1.08996 * 109.67864 * 175.78178 * 14 13 11 35 35 H 1.09007 * 110.04808 * 296.42710 * 15 14 13 36 36 H 1.08996 * 109.94431 * 175.20689 * 15 14 13 37 37 H 1.08996 * 109.47091 * 59.99637 * 19 17 16 38 38 H 1.09007 * 109.46765 * 299.99429 * 19 17 16 39 39 H 1.09003 * 111.04084 * 335.78688 * 22 20 19 40 40 H 1.09000 * 110.99806 * 211.95397 * 22 20 19 41 41 H 1.08993 * 110.24796 * 266.39445 * 23 22 20 42 42 H 1.08993 * 110.24914 * 144.47275 * 23 22 20 43 43 H 0.97001 * 124.35232 * 162.95633 * 24 23 22 44 44 H 1.09001 * 110.71186 * 62.21558 * 29 9 7 45 45 H 1.08995 * 109.81504 * 300.57910 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0847 -1.2053 0.1105 9 7 1.3327 -2.3840 -0.1381 10 6 1.9480 -3.7164 -0.2843 11 6 0.8653 -4.7106 0.2199 12 1 0.9962 -5.7197 -0.1707 13 8 0.8955 -4.6757 1.6468 14 6 -0.2189 -5.2770 2.3039 15 6 -1.4808 -4.4665 1.9547 16 7 -1.5800 -4.4302 0.4881 17 6 -2.7390 -4.7531 -0.1195 18 8 -2.8199 -4.7176 -1.3291 19 6 -3.9343 -5.1579 0.7041 20 6 -5.1107 -5.4695 -0.2232 21 1 -4.8323 -6.2357 -0.9468 22 6 -6.3441 -5.9190 0.5982 23 6 -7.1039 -4.5857 0.7756 24 7 -6.6931 -3.7454 -0.3554 25 6 -5.5731 -4.2154 -0.9315 26 8 -5.0150 -3.7080 -1.8811 27 6 -0.4231 -4.0385 -0.3055 28 1 -0.5819 -4.3036 -1.3508 29 6 -0.1436 -2.5327 -0.1825 30 1 -0.4850 0.8400 -0.0004 31 1 2.8455 -3.7894 0.3297 32 1 2.1855 -3.9122 -1.3299 33 1 -0.3343 -6.3061 1.9634 34 1 -0.0608 -5.2627 3.3822 35 1 -1.3937 -3.4526 2.3455 36 1 -2.3621 -4.9517 2.3740 37 1 -4.2065 -4.3427 1.3745 38 1 -3.6886 -6.0436 1.2901 39 1 -6.0439 -6.3282 1.5629 40 1 -6.9436 -6.6385 0.0405 41 1 -6.8235 -4.1142 1.7173 42 1 -8.1798 -4.7579 0.7462 43 1 -7.1684 -2.9525 -0.6492 44 1 -0.5585 -2.0059 -1.0418 45 1 -0.5817 -2.1469 0.7380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083103950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:14 Heat of formation + Delta-G solvation = -95.267086 kcal Electronic energy + Delta-G solvation = -29171.668613 eV Core-core repulsion = 25189.309928 eV Total energy + Delta-G solvation = -3982.358684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.93253 -41.11441 -39.44421 -37.39815 -37.31618 -35.86408 -34.30595 -33.69471 -31.39658 -30.19039 -29.10028 -28.94643 -27.09313 -25.97749 -24.38603 -22.65385 -22.46801 -22.02106 -20.83446 -19.66378 -19.05068 -18.55954 -18.04085 -17.83368 -17.26328 -16.93664 -16.62937 -16.25806 -16.13519 -15.74764 -15.53887 -15.13748 -14.96441 -14.64054 -14.55169 -14.35044 -13.99816 -13.74718 -13.53566 -13.46224 -13.26370 -13.09267 -12.96489 -12.86321 -12.61528 -12.44495 -12.22710 -12.08586 -12.03798 -11.83072 -11.80576 -11.44755 -10.98308 -10.83455 -10.75700 -10.52442 -9.97282 -9.45553 -8.96527 -7.88818 -5.25072 1.41318 1.45299 1.54012 1.65320 1.67364 1.93885 2.46981 2.53955 2.80832 3.30806 3.33498 3.48838 3.55631 3.63409 3.76077 3.85072 3.92675 4.09816 4.13109 4.20538 4.26525 4.34503 4.38518 4.45095 4.52274 4.61578 4.69148 4.79357 4.81916 4.87902 4.94655 4.96517 5.00869 5.15706 5.25648 5.26633 5.41593 5.51270 5.69094 6.03964 6.09236 6.09949 6.38881 6.45957 7.00019 7.24944 7.40707 7.69298 8.35474 9.22148 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014686 B = 0.004037 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.171908 B = 6933.940901 C = 8035.245552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.982 3.018 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.260 1.260 7 C -0.238 4.238 8 H 0.089 0.911 9 N -0.622 5.622 10 C 0.133 3.867 11 C 0.091 3.909 12 H 0.110 0.890 13 O -0.388 6.388 14 C 0.047 3.953 15 C 0.069 3.931 16 N -0.602 5.602 17 C 0.485 3.515 18 O -0.563 6.563 19 C -0.111 4.111 20 C -0.108 4.108 21 H 0.096 0.904 22 C -0.112 4.112 23 C 0.092 3.908 24 N -0.736 5.736 25 C 0.494 3.506 26 O -0.573 6.573 27 C 0.096 3.904 28 H 0.076 0.924 29 C 0.204 3.796 30 H 0.244 0.756 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.050 0.950 36 H 0.145 0.855 37 H 0.110 0.890 38 H 0.159 0.841 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.408 0.592 44 H -0.013 1.013 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.695 -19.121 11.277 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.810 3.190 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.184 1.184 7 C -0.367 4.367 8 H 0.107 0.893 9 N -0.348 5.348 10 C 0.008 3.992 11 C 0.031 3.969 12 H 0.127 0.873 13 O -0.307 6.307 14 C -0.030 4.030 15 C -0.052 4.052 16 N -0.336 5.336 17 C 0.275 3.725 18 O -0.440 6.440 19 C -0.151 4.151 20 C -0.130 4.130 21 H 0.115 0.885 22 C -0.149 4.149 23 C -0.030 4.030 24 N -0.392 5.392 25 C 0.280 3.720 26 O -0.450 6.450 27 C -0.010 4.010 28 H 0.094 0.906 29 C 0.078 3.922 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.068 0.932 36 H 0.163 0.837 37 H 0.128 0.872 38 H 0.176 0.824 39 H 0.151 0.849 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.246 0.754 44 H 0.005 0.995 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -14.270 -18.667 10.328 25.666 hybrid contribution 0.000 2.164 -1.048 2.404 sum -14.270 -16.503 9.280 23.709 Atomic orbital electron populations 1.70249 1.06722 1.25097 1.58444 1.25747 0.96494 1.01377 1.02644 0.84999 0.78040 0.78829 0.77145 1.21772 1.22134 1.18441 1.19534 0.91724 0.83544 1.41852 0.89289 1.44941 1.01558 1.02510 1.85834 1.21914 0.95401 0.83905 0.97977 1.23580 0.93411 0.98066 0.81808 0.87262 1.87842 1.44366 1.80746 1.17758 1.23308 0.84469 0.95863 0.99338 1.22873 1.02431 1.01629 0.78317 1.47764 1.10779 1.67053 1.07973 1.21800 0.84875 0.76850 0.88957 1.90819 1.83221 1.53395 1.16597 1.21710 0.89348 1.06309 0.97719 1.21800 0.96933 0.95598 0.98688 0.88550 1.22829 0.92794 0.96747 1.02557 1.22434 1.01517 0.90556 0.88526 1.46467 1.27632 1.30809 1.34282 1.21642 0.80489 0.87124 0.82759 1.90823 1.59695 1.64714 1.29790 1.22136 0.87163 0.95798 0.95954 0.90570 1.20944 0.84230 0.90191 0.96884 0.94737 0.91924 0.93797 0.90331 0.85178 0.93184 0.83744 0.87182 0.82362 0.84889 0.88357 0.89345 0.87639 0.75385 0.99490 0.96478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.66 10.37 21.65 0.22 -62.43 16 2 C -0.07 -4.28 5.48 84.86 0.47 -3.82 16 3 Si 0.98 48.58 29.56 68.60 2.03 50.60 16 4 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 5 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.24 -14.20 10.27 84.03 0.86 -13.33 16 8 H 0.09 4.99 7.84 -2.91 -0.02 4.97 16 9 N -0.62 -34.73 3.43 -688.51 -2.36 -37.09 16 10 C 0.13 5.82 6.80 87.02 0.59 6.41 16 11 C 0.09 3.33 4.13 31.94 0.13 3.46 16 12 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 13 O -0.39 -13.57 10.11 -148.98 -1.51 -15.08 16 14 C 0.05 1.06 7.04 72.31 0.51 1.57 16 15 C 0.07 1.72 6.31 86.61 0.55 2.27 16 16 N -0.60 -20.83 2.71 -792.40 -2.15 -22.98 16 17 C 0.49 16.56 7.45 87.66 0.65 17.21 16 18 O -0.56 -25.81 13.09 18.24 0.24 -25.57 16 19 C -0.11 -2.06 3.47 29.85 0.10 -1.95 16 20 C -0.11 -2.11 2.57 -10.72 -0.03 -2.14 16 21 H 0.10 2.19 8.02 -2.39 -0.02 2.17 16 22 C -0.11 -0.74 6.72 31.73 0.21 -0.53 16 23 C 0.09 0.75 7.78 86.83 0.68 1.43 16 24 N -0.74 -14.57 6.24 -459.81 -2.87 -17.44 16 25 C 0.49 14.99 7.39 87.89 0.65 15.64 16 26 O -0.57 -26.25 15.86 18.26 0.29 -25.96 16 27 C 0.10 4.17 3.03 45.88 0.14 4.31 16 28 H 0.08 3.64 7.06 -2.39 -0.02 3.63 16 29 C 0.20 11.43 5.09 86.22 0.44 11.87 16 30 H 0.24 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.05 1.60 7.59 -2.38 -0.02 1.58 16 36 H 0.14 1.83 5.95 -2.39 -0.01 1.81 16 37 H 0.11 1.76 7.99 -2.39 -0.02 1.74 16 38 H 0.16 1.18 7.61 -2.38 -0.02 1.16 16 39 H 0.13 -0.10 7.91 -2.39 -0.02 -0.12 16 40 H 0.10 0.46 8.14 -2.39 -0.02 0.45 16 41 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.41 7.72 8.96 -92.71 -0.83 6.88 16 44 H -0.01 -0.88 7.46 -2.39 -0.02 -0.90 16 45 H 0.02 1.05 6.65 -2.39 -0.02 1.03 16 Total: -1.00 -101.12 352.71 0.03 -101.09 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.18 Total: 12.46 kcal Atomic # 6 Polarization: 36.44 SS G_CDS: 5.95 Total: 42.39 kcal Atomic # 7 Polarization: -132.79 SS G_CDS: -7.15 Total: -139.94 kcal Atomic # 8 Polarization: -65.62 SS G_CDS: -0.98 Total: -66.60 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -101.12 0.03 -101.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083103950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.819 kcal (2) G-P(sol) polarization free energy of solvation -101.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds