Wall clock time and date at job start Fri Apr 10 2020 18:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99544 * 2 1 4 4 H 1.48501 * 109.47294 * 95.37886 * 3 2 1 5 5 H 1.48494 * 109.47015 * 335.37390 * 3 2 1 6 6 H 1.48502 * 109.46534 * 215.37886 * 3 2 1 7 7 C 1.38808 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99822 * 28.40189 * 7 2 1 9 9 N 1.36937 * 120.00223 * 208.40034 * 7 2 1 10 10 C 1.46771 * 125.36069 * 9.55608 * 9 7 2 11 11 C 1.53926 * 107.61846 * 178.66206 * 10 9 7 12 12 H 1.09001 * 108.57336 * 101.54423 * 11 10 9 13 13 O 1.40852 * 110.46033 * 221.67527 * 11 10 9 14 14 C 1.41320 * 118.30994 * 68.19279 * 13 11 10 15 15 C 1.51955 * 111.60580 * 56.89364 * 14 13 11 16 16 N 1.44963 * 111.94232 * 319.69609 * 15 14 13 17 17 C 1.34780 * 117.34083 * 203.73175 * 16 15 14 18 18 O 1.21275 * 120.00196 * 185.64384 * 17 16 15 19 19 C 1.50697 * 119.99814 * 5.64785 * 17 16 15 20 20 C 1.52997 * 109.46934 * 180.02562 * 19 17 16 21 21 H 1.09003 * 110.43095 * 303.90347 * 20 19 17 22 22 C 1.54631 * 110.48825 * 181.22913 * 20 19 17 23 23 C 1.54480 * 101.76510 * 266.11887 * 22 20 19 24 24 N 1.46764 * 105.46900 * 334.58038 * 23 22 20 25 25 C 1.34420 * 111.30235 * 17.02014 * 24 23 22 26 26 O 1.21283 * 124.93892 * 179.62803 * 25 24 23 27 27 C 1.44551 * 125.31840 * 23.75708 * 16 15 14 28 28 H 1.09000 * 109.63759 * 105.97033 * 27 16 15 29 29 C 1.46871 * 125.36158 * 189.85885 * 9 7 2 30 30 H 0.97004 * 119.99838 * 184.87123 * 1 2 3 31 31 H 1.08996 * 109.82650 * 298.33838 * 10 9 7 32 32 H 1.08999 * 109.82698 * 59.29251 * 10 9 7 33 33 H 1.09001 * 109.04880 * 296.34725 * 14 13 11 34 34 H 1.09002 * 108.99692 * 177.40387 * 14 13 11 35 35 H 1.09003 * 108.98752 * 199.06185 * 15 14 13 36 36 H 1.09000 * 108.98749 * 80.33331 * 15 14 13 37 37 H 1.09001 * 109.47264 * 299.99777 * 19 17 16 38 38 H 1.09002 * 109.47401 * 59.99628 * 19 17 16 39 39 H 1.09002 * 110.96863 * 24.22997 * 22 20 19 40 40 H 1.08995 * 110.97640 * 147.99453 * 22 20 19 41 41 H 1.09002 * 110.24577 * 215.58227 * 23 22 20 42 42 H 1.09000 * 110.24823 * 93.57828 * 23 22 20 43 43 H 0.97007 * 124.34870 * 196.99797 * 24 23 22 44 44 H 1.09000 * 110.06771 * 317.03337 * 29 9 7 45 45 H 1.09001 * 110.06671 * 78.55601 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.6112 1.9810 1.3939 5 1 1.3953 2.6828 -0.5834 6 1 3.4862 1.4757 -0.8107 7 6 2.0103 -1.2021 0.0005 8 1 1.5678 -2.0813 -0.4440 9 7 3.2561 -1.2731 0.5646 10 6 3.8854 -0.2195 1.3695 11 6 5.2614 -0.7391 1.8234 12 1 6.0276 -0.2919 1.1900 13 8 5.4998 -0.3921 3.1676 14 6 4.7147 -1.0081 4.1682 15 6 4.8183 -2.5229 4.1070 16 7 4.8189 -3.0112 2.7421 17 6 4.4190 -4.2822 2.5391 18 8 4.4973 -4.7732 1.4330 19 6 3.8745 -5.0931 3.6867 20 6 3.4975 -6.4903 3.1901 21 1 2.7901 -6.4223 2.3636 22 6 2.9067 -7.3335 4.3438 23 6 4.1565 -8.0801 4.8604 24 7 5.0766 -8.1398 3.7186 25 6 4.7335 -7.2536 2.7680 26 8 5.3279 -7.0902 1.7235 27 6 5.2140 -2.2460 1.5810 28 1 6.1897 -2.5856 1.2332 29 6 4.1754 -2.4132 0.4542 30 1 -0.4850 -0.8371 0.0713 31 1 4.0078 0.6815 0.7685 32 1 3.2687 -0.0024 2.2417 33 1 3.6731 -0.7169 4.0327 34 1 5.0550 -0.6674 5.1461 35 1 3.9722 -2.9580 4.6389 36 1 5.7411 -2.8353 4.5958 37 1 4.6334 -5.1769 4.4647 38 1 2.9909 -4.6006 4.0926 39 1 2.4865 -6.6932 5.1194 40 1 2.1596 -8.0345 3.9718 41 1 3.8886 -9.0865 5.1821 42 1 4.6119 -7.5290 5.6833 43 1 5.8352 -8.7414 3.6578 44 1 3.6296 -3.3477 0.5841 45 1 4.6713 -2.4011 -0.5164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083103951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:18 Heat of formation + Delta-G solvation = -52.956655 kcal Electronic energy + Delta-G solvation = -29543.784091 eV Core-core repulsion = 25563.260124 eV Total energy + Delta-G solvation = -3980.523966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14339 -40.29579 -38.38214 -36.43539 -36.18282 -34.87312 -33.11805 -32.39026 -30.43207 -29.41075 -28.10998 -27.89467 -26.00837 -24.14612 -23.41978 -22.05499 -21.17569 -20.30847 -19.91040 -18.70017 -17.68834 -17.42324 -17.05489 -16.93978 -16.31307 -15.86067 -15.68741 -15.23891 -14.91234 -14.74016 -14.18784 -14.03162 -13.90289 -13.72499 -13.50364 -13.07387 -12.98050 -12.84301 -12.70998 -12.52838 -12.10090 -11.98885 -11.72860 -11.51129 -11.33175 -11.14926 -11.03084 -10.92812 -10.64293 -10.36877 -9.79649 -9.72456 -9.49351 -9.25096 -9.20227 -8.99799 -8.40921 -8.27228 -7.00877 -6.33130 -3.13750 2.60934 2.85143 3.01998 3.21180 3.45760 3.55564 3.72525 3.84296 4.13434 4.16711 4.43626 4.55227 4.65479 4.70687 4.78292 4.88887 4.95680 5.03271 5.07114 5.11507 5.16306 5.21252 5.25043 5.34373 5.47513 5.49278 5.55161 5.58344 5.65760 5.72577 5.82561 5.84004 6.02573 6.33083 6.48320 6.62921 6.70850 6.77353 6.88351 7.07592 7.43589 7.54731 7.78093 8.26907 8.37946 8.44634 9.06539 9.62152 10.27718 11.16236 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.004165 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.016856 B = 6720.288867 C = 7292.649325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.014 4.014 3 Si 1.052 2.948 4 H -0.294 1.294 5 H -0.298 1.298 6 H -0.293 1.293 7 C -0.326 4.326 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.091 3.909 11 C 0.087 3.913 12 H 0.118 0.882 13 O -0.368 6.368 14 C 0.055 3.945 15 C 0.080 3.920 16 N -0.593 5.593 17 C 0.497 3.503 18 O -0.492 6.492 19 C -0.123 4.123 20 C -0.110 4.110 21 H 0.115 0.885 22 C -0.131 4.131 23 C 0.102 3.898 24 N -0.744 5.744 25 C 0.517 3.483 26 O -0.493 6.493 27 C 0.115 3.885 28 H 0.077 0.923 29 C 0.118 3.882 30 H 0.263 0.737 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.407 0.593 44 H 0.080 0.920 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.846 -13.000 17.214 23.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.215 4.215 3 Si 0.885 3.115 4 H -0.222 1.222 5 H -0.226 1.226 6 H -0.221 1.221 7 C -0.452 4.452 8 H 0.096 0.904 9 N -0.333 5.333 10 C -0.034 4.034 11 C 0.028 3.972 12 H 0.136 0.864 13 O -0.285 6.285 14 C -0.022 4.022 15 C -0.044 4.044 16 N -0.328 5.328 17 C 0.284 3.716 18 O -0.365 6.365 19 C -0.163 4.163 20 C -0.132 4.132 21 H 0.133 0.867 22 C -0.169 4.169 23 C -0.022 4.022 24 N -0.402 5.402 25 C 0.302 3.698 26 O -0.365 6.365 27 C 0.011 3.989 28 H 0.095 0.905 29 C -0.008 4.008 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.245 0.755 44 H 0.098 0.902 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.976 -11.287 15.956 21.944 hybrid contribution 0.329 -1.988 0.155 2.021 sum 10.305 -13.275 16.111 23.280 Atomic orbital electron populations 1.70890 1.06153 1.29229 1.49228 1.25725 0.96140 1.00493 0.99111 0.84005 0.74235 0.77045 0.76195 1.22201 1.22634 1.22094 1.20030 0.89521 0.97984 1.37694 0.90361 1.44628 1.15864 1.13581 1.59200 1.22158 0.92356 0.93201 0.95710 1.22554 0.99097 0.92790 0.82780 0.86402 1.86897 1.61138 1.66218 1.14287 1.22296 0.97190 0.90621 0.92118 1.21606 1.02187 0.97132 0.83484 1.46612 1.67339 1.12414 1.06473 1.20509 0.78736 0.81766 0.90571 1.90805 1.51975 1.69168 1.24557 1.21595 1.02990 0.93918 0.97801 1.21734 0.97519 0.93834 1.00126 0.86741 1.22706 0.97026 0.99127 0.98060 1.22017 0.90075 1.01290 0.88860 1.46294 1.32331 1.41301 1.20269 1.20739 0.85924 0.79887 0.83256 1.90842 1.56603 1.65560 1.23461 1.21576 0.99075 0.91734 0.86539 0.90550 1.21932 0.91151 0.93931 0.93742 0.92694 0.94829 0.93762 0.92213 0.87566 0.89898 0.91840 0.89063 0.87582 0.88859 0.89544 0.90443 0.91296 0.75515 0.90248 0.95138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.92 13.70 55.49 0.76 -28.16 16 2 C -0.01 -0.42 5.42 -17.43 -0.09 -0.51 16 3 Si 1.05 27.32 24.67 -169.99 -4.19 23.13 16 4 H -0.29 -7.20 6.69 56.52 0.38 -6.82 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 6 H -0.29 -7.35 6.79 56.52 0.38 -6.96 16 7 C -0.33 -9.64 10.39 -15.06 -0.16 -9.79 16 8 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 9 N -0.60 -15.53 3.29 -171.44 -0.56 -16.09 16 10 C 0.09 2.08 4.59 -3.41 -0.02 2.06 16 11 C 0.09 1.58 3.82 -26.40 -0.10 1.48 16 12 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 13 O -0.37 -5.99 10.24 -34.45 -0.35 -6.35 16 14 C 0.05 0.72 6.72 36.63 0.25 0.96 16 15 C 0.08 0.95 5.91 -5.40 -0.03 0.92 16 16 N -0.59 -9.60 3.09 -168.83 -0.52 -10.12 16 17 C 0.50 8.23 6.72 -10.99 -0.07 8.16 16 18 O -0.49 -10.21 10.99 -16.68 -0.18 -10.39 16 19 C -0.12 -1.35 3.53 -27.89 -0.10 -1.45 16 20 C -0.11 -1.22 2.57 -90.63 -0.23 -1.46 16 21 H 0.11 1.53 8.02 -51.93 -0.42 1.11 16 22 C -0.13 -0.83 6.71 -25.10 -0.17 -0.99 16 23 C 0.10 0.55 7.78 -3.12 -0.02 0.53 16 24 N -0.74 -6.61 6.24 -59.20 -0.37 -6.98 16 25 C 0.52 7.01 7.39 -10.86 -0.08 6.93 16 26 O -0.49 -9.42 15.86 -16.69 -0.26 -9.69 16 27 C 0.12 2.15 3.34 -68.51 -0.23 1.92 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 29 C 0.12 2.70 6.29 -3.23 -0.02 2.67 16 30 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 31 H 0.03 0.81 3.83 -51.93 -0.20 0.61 16 32 H 0.04 1.06 6.22 -51.93 -0.32 0.73 16 33 H 0.06 0.89 6.84 -51.93 -0.35 0.54 16 34 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.77 6.27 -51.93 -0.33 0.45 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 38 H 0.11 0.97 7.42 -51.93 -0.39 0.59 16 39 H 0.09 0.40 7.90 -51.93 -0.41 -0.01 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.41 3.06 8.96 -40.82 -0.37 2.69 16 44 H 0.08 1.96 5.11 -51.93 -0.27 1.70 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -39.17 340.26 -8.10 -47.27 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.46 Total: 0.82 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -1.08 Total: 11.43 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.69 Total: -61.35 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.80 Total: -26.43 kcal Atomic # 14 Polarization: 27.32 SS G_CDS: -4.19 Total: 23.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -39.17 -8.10 -47.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083103951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.686 kcal (2) G-P(sol) polarization free energy of solvation -39.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds