Wall clock time and date at job start Fri Apr 10 2020 18:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99544 * 2 1 4 4 H 1.48501 * 109.47294 * 95.37886 * 3 2 1 5 5 H 1.48494 * 109.47015 * 335.37390 * 3 2 1 6 6 H 1.48502 * 109.46534 * 215.37886 * 3 2 1 7 7 C 1.38808 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99822 * 28.40189 * 7 2 1 9 9 N 1.36937 * 120.00223 * 208.40034 * 7 2 1 10 10 C 1.46771 * 125.36069 * 9.55608 * 9 7 2 11 11 C 1.53926 * 107.61846 * 178.66206 * 10 9 7 12 12 H 1.09001 * 108.57336 * 101.54423 * 11 10 9 13 13 O 1.40852 * 110.46033 * 221.67527 * 11 10 9 14 14 C 1.41320 * 118.30994 * 68.19279 * 13 11 10 15 15 C 1.51955 * 111.60580 * 56.89364 * 14 13 11 16 16 N 1.44963 * 111.94232 * 319.69609 * 15 14 13 17 17 C 1.34780 * 117.34083 * 203.73175 * 16 15 14 18 18 O 1.21275 * 120.00196 * 185.64384 * 17 16 15 19 19 C 1.50697 * 119.99814 * 5.64785 * 17 16 15 20 20 C 1.52997 * 109.46934 * 180.02562 * 19 17 16 21 21 H 1.09003 * 110.43095 * 303.90347 * 20 19 17 22 22 C 1.54631 * 110.48825 * 181.22913 * 20 19 17 23 23 C 1.54480 * 101.76510 * 266.11887 * 22 20 19 24 24 N 1.46764 * 105.46900 * 334.58038 * 23 22 20 25 25 C 1.34420 * 111.30235 * 17.02014 * 24 23 22 26 26 O 1.21283 * 124.93892 * 179.62803 * 25 24 23 27 27 C 1.44551 * 125.31840 * 23.75708 * 16 15 14 28 28 H 1.09000 * 109.63759 * 105.97033 * 27 16 15 29 29 C 1.46871 * 125.36158 * 189.85885 * 9 7 2 30 30 H 0.97004 * 119.99838 * 184.87123 * 1 2 3 31 31 H 1.08996 * 109.82650 * 298.33838 * 10 9 7 32 32 H 1.08999 * 109.82698 * 59.29251 * 10 9 7 33 33 H 1.09001 * 109.04880 * 296.34725 * 14 13 11 34 34 H 1.09002 * 108.99692 * 177.40387 * 14 13 11 35 35 H 1.09003 * 108.98752 * 199.06185 * 15 14 13 36 36 H 1.09000 * 108.98749 * 80.33331 * 15 14 13 37 37 H 1.09001 * 109.47264 * 299.99777 * 19 17 16 38 38 H 1.09002 * 109.47401 * 59.99628 * 19 17 16 39 39 H 1.09002 * 110.96863 * 24.22997 * 22 20 19 40 40 H 1.08995 * 110.97640 * 147.99453 * 22 20 19 41 41 H 1.09002 * 110.24577 * 215.58227 * 23 22 20 42 42 H 1.09000 * 110.24823 * 93.57828 * 23 22 20 43 43 H 0.97007 * 124.34870 * 196.99797 * 24 23 22 44 44 H 1.09000 * 110.06771 * 317.03337 * 29 9 7 45 45 H 1.09001 * 110.06671 * 78.55601 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.6112 1.9810 1.3939 5 1 1.3953 2.6828 -0.5834 6 1 3.4862 1.4757 -0.8107 7 6 2.0103 -1.2021 0.0005 8 1 1.5678 -2.0813 -0.4440 9 7 3.2561 -1.2731 0.5646 10 6 3.8854 -0.2195 1.3695 11 6 5.2614 -0.7391 1.8234 12 1 6.0276 -0.2919 1.1900 13 8 5.4998 -0.3921 3.1676 14 6 4.7147 -1.0081 4.1682 15 6 4.8183 -2.5229 4.1070 16 7 4.8189 -3.0112 2.7421 17 6 4.4190 -4.2822 2.5391 18 8 4.4973 -4.7732 1.4330 19 6 3.8745 -5.0931 3.6867 20 6 3.4975 -6.4903 3.1901 21 1 2.7901 -6.4223 2.3636 22 6 2.9067 -7.3335 4.3438 23 6 4.1565 -8.0801 4.8604 24 7 5.0766 -8.1398 3.7186 25 6 4.7335 -7.2536 2.7680 26 8 5.3279 -7.0902 1.7235 27 6 5.2140 -2.2460 1.5810 28 1 6.1897 -2.5856 1.2332 29 6 4.1754 -2.4132 0.4542 30 1 -0.4850 -0.8371 0.0713 31 1 4.0078 0.6815 0.7685 32 1 3.2687 -0.0024 2.2417 33 1 3.6731 -0.7169 4.0327 34 1 5.0550 -0.6674 5.1461 35 1 3.9722 -2.9580 4.6389 36 1 5.7411 -2.8353 4.5958 37 1 4.6334 -5.1769 4.4647 38 1 2.9909 -4.6006 4.0926 39 1 2.4865 -6.6932 5.1194 40 1 2.1596 -8.0345 3.9718 41 1 3.8886 -9.0865 5.1821 42 1 4.6119 -7.5290 5.6833 43 1 5.8352 -8.7414 3.6578 44 1 3.6296 -3.3477 0.5841 45 1 4.6713 -2.4011 -0.5164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083103951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:17 Heat of formation + Delta-G solvation = -85.830462 kcal Electronic energy + Delta-G solvation = -29545.209606 eV Core-core repulsion = 25563.260124 eV Total energy + Delta-G solvation = -3981.949482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.35569 -41.31416 -39.66033 -37.88922 -37.38719 -36.14561 -34.71217 -33.76178 -32.07366 -30.30959 -29.69607 -29.14551 -27.07163 -25.85541 -24.78266 -22.84082 -22.54274 -21.89933 -20.95075 -20.07492 -19.44019 -18.62425 -18.43245 -18.07617 -17.43568 -17.19005 -16.85153 -16.36339 -16.12068 -15.97739 -15.76751 -15.49192 -15.19540 -14.86846 -14.72034 -14.59307 -14.42827 -13.91907 -13.67826 -13.62308 -13.46652 -13.30622 -13.07854 -12.88125 -12.75052 -12.68060 -12.21364 -12.16191 -11.89400 -11.84397 -11.68024 -11.35373 -11.01596 -10.75281 -10.61299 -10.35817 -9.98545 -9.55750 -9.17528 -8.75281 -5.48171 1.35728 1.47345 1.58681 1.67002 1.67644 1.85491 2.47682 2.50259 2.62592 2.95708 3.19567 3.34487 3.42522 3.45765 3.52475 3.70809 3.79935 3.91851 3.99597 4.12887 4.17421 4.18699 4.29430 4.32398 4.38381 4.47926 4.54213 4.65323 4.69670 4.78903 4.83197 4.87722 4.90861 4.97141 4.99059 5.10348 5.20861 5.50308 5.61580 5.99942 6.03215 6.08824 6.20235 6.34884 6.75684 7.21948 7.38463 7.39284 8.03669 8.75446 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.004165 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.016856 B = 6720.288867 C = 7292.649325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.061 4.061 3 Si 1.098 2.902 4 H -0.267 1.267 5 H -0.300 1.300 6 H -0.280 1.280 7 C -0.326 4.326 8 H 0.037 0.963 9 N -0.618 5.618 10 C 0.086 3.914 11 C 0.103 3.897 12 H 0.139 0.861 13 O -0.366 6.366 14 C 0.045 3.955 15 C 0.071 3.929 16 N -0.600 5.600 17 C 0.481 3.519 18 O -0.546 6.546 19 C -0.112 4.112 20 C -0.114 4.114 21 H 0.076 0.924 22 C -0.119 4.119 23 C 0.099 3.901 24 N -0.730 5.730 25 C 0.505 3.495 26 O -0.566 6.566 27 C 0.126 3.874 28 H 0.083 0.917 29 C 0.118 3.882 30 H 0.250 0.750 31 H 0.031 0.969 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.154 0.846 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.413 0.587 44 H 0.054 0.946 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.602 -12.700 21.879 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.257 4.257 3 Si 0.925 3.075 4 H -0.193 1.193 5 H -0.228 1.228 6 H -0.207 1.207 7 C -0.454 4.454 8 H 0.055 0.945 9 N -0.346 5.346 10 C -0.039 4.039 11 C 0.044 3.956 12 H 0.157 0.843 13 O -0.283 6.283 14 C -0.032 4.032 15 C -0.050 4.050 16 N -0.335 5.335 17 C 0.270 3.730 18 O -0.423 6.423 19 C -0.152 4.152 20 C -0.137 4.137 21 H 0.095 0.905 22 C -0.157 4.157 23 C -0.024 4.024 24 N -0.386 5.386 25 C 0.291 3.709 26 O -0.443 6.443 27 C 0.020 3.980 28 H 0.101 0.899 29 C -0.008 4.008 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.171 0.829 35 H 0.132 0.868 36 H 0.116 0.884 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.252 0.748 44 H 0.072 0.928 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 11.746 -11.028 20.738 26.261 hybrid contribution -0.281 -2.238 -1.266 2.587 sum 11.465 -13.266 19.472 26.202 Atomic orbital electron populations 1.70989 1.07177 1.28504 1.51817 1.26959 0.96139 1.03780 0.98773 0.83390 0.73363 0.72857 0.77855 1.19253 1.22843 1.20708 1.19833 0.91368 0.96701 1.37485 0.94508 1.44609 1.15233 1.15458 1.59333 1.22318 0.94658 0.92281 0.94636 1.22384 0.96734 0.91907 0.84590 0.84339 1.86922 1.61330 1.66667 1.13404 1.22690 0.95877 0.91502 0.93088 1.22009 1.05336 0.96411 0.81273 1.46827 1.66991 1.12218 1.07470 1.21628 0.77832 0.82046 0.91494 1.90794 1.53952 1.70355 1.27188 1.21686 1.04669 0.92640 0.96162 1.21739 0.96036 0.94871 1.01052 0.90540 1.22781 0.97480 0.98795 0.96634 1.22387 0.88796 1.03349 0.87842 1.46343 1.32551 1.39495 1.20169 1.21243 0.86258 0.80504 0.82927 1.90798 1.58916 1.68008 1.26597 1.21270 0.97509 0.92741 0.86460 0.89881 1.21909 0.91564 0.91951 0.95371 0.94096 0.95175 0.94669 0.94510 0.82898 0.86838 0.88441 0.85211 0.85084 0.85623 0.89256 0.87685 0.88371 0.74829 0.92802 0.96498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.59 13.70 21.65 0.30 -61.30 16 2 C -0.06 -3.77 5.42 84.86 0.46 -3.31 16 3 Si 1.10 55.40 24.67 68.60 1.69 57.09 16 4 H -0.27 -12.20 6.69 99.48 0.67 -11.53 16 5 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 6 H -0.28 -13.44 6.79 99.48 0.68 -12.76 16 7 C -0.33 -20.22 10.39 84.03 0.87 -19.35 16 8 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 9 N -0.62 -32.64 3.29 -696.31 -2.29 -34.93 16 10 C 0.09 3.83 4.59 86.64 0.40 4.23 16 11 C 0.10 3.56 3.82 30.81 0.12 3.68 16 12 H 0.14 4.19 8.14 -2.39 -0.02 4.17 16 13 O -0.37 -10.58 10.24 -146.18 -1.50 -12.07 16 14 C 0.04 0.98 6.72 71.64 0.48 1.46 16 15 C 0.07 1.39 5.91 86.32 0.51 1.90 16 16 N -0.60 -18.46 3.09 -806.46 -2.49 -20.95 16 17 C 0.48 15.82 6.72 87.66 0.59 16.41 16 18 O -0.55 -24.10 10.99 18.25 0.20 -23.90 16 19 C -0.11 -2.17 3.53 29.85 0.11 -2.07 16 20 C -0.11 -2.46 2.57 -10.80 -0.03 -2.49 16 21 H 0.08 2.21 8.02 -2.39 -0.02 2.19 16 22 C -0.12 -1.07 6.71 31.65 0.21 -0.86 16 23 C 0.10 0.62 7.78 86.83 0.68 1.29 16 24 N -0.73 -11.48 6.24 -459.81 -2.87 -14.35 16 25 C 0.50 13.78 7.39 87.89 0.65 14.43 16 26 O -0.57 -23.06 15.86 18.23 0.29 -22.77 16 27 C 0.13 4.63 3.34 45.65 0.15 4.78 16 28 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 29 C 0.12 5.61 6.29 86.70 0.55 6.16 16 30 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 31 H 0.03 1.40 3.83 -2.39 -0.01 1.39 16 32 H 0.04 1.64 6.22 -2.39 -0.01 1.62 16 33 H 0.04 0.99 6.84 -2.39 -0.02 0.97 16 34 H 0.15 1.95 8.14 -2.39 -0.02 1.94 16 35 H 0.11 1.51 6.27 -2.39 -0.01 1.50 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.13 1.53 7.94 -2.39 -0.02 1.51 16 38 H 0.13 1.90 7.42 -2.39 -0.02 1.88 16 39 H 0.13 0.38 7.90 -2.39 -0.02 0.36 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.41 5.52 8.96 -92.70 -0.83 4.69 16 44 H 0.05 2.87 5.11 -2.39 -0.01 2.86 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -95.45 340.26 -0.84 -96.29 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.09 Total: 10.63 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 5.74 Total: 26.26 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -7.35 Total: -131.52 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -1.01 Total: -58.75 kcal Atomic # 14 Polarization: 55.40 SS G_CDS: 1.69 Total: 57.09 kcal Total: -95.45 -0.84 -96.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083103951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.457 kcal (2) G-P(sol) polarization free energy of solvation -95.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds