Wall clock time and date at job start Fri Apr 10 2020 18:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00163 * 2 1 4 4 H 1.48497 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46990 * 300.00377 * 3 2 1 6 6 H 1.48504 * 109.47100 * 60.00096 * 3 2 1 7 7 C 1.38811 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00262 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.47997 * 125.53753 * 0.62164 * 9 7 2 11 11 C 1.54898 * 106.72820 * 180.53260 * 10 9 7 12 12 H 1.08999 * 112.08507 * 142.60008 * 11 10 9 13 13 O 1.42782 * 107.17719 * 265.69439 * 11 10 9 14 14 C 1.42624 * 115.83243 * 166.93303 * 13 11 10 15 15 C 1.53570 * 108.29377 * 295.39511 * 14 13 11 16 16 N 1.47037 * 107.23841 * 55.93636 * 15 14 13 17 17 C 1.34778 * 120.03452 * 130.37387 * 16 15 14 18 18 O 1.21280 * 120.00205 * 175.13309 * 17 16 15 19 19 C 1.50701 * 119.99936 * 355.13778 * 17 16 15 20 20 H 1.09001 * 109.40192 * 35.19753 * 19 17 16 21 21 C 1.53069 * 109.40318 * 275.45440 * 19 17 16 22 22 C 1.53322 * 108.44036 * 190.97635 * 21 19 17 23 23 C 1.52927 * 108.68207 * 67.51017 * 22 21 19 24 24 N 1.45754 * 110.48587 * 309.25516 * 23 22 21 25 25 C 1.33353 * 124.10934 * 19.09643 * 24 23 22 26 26 O 1.21277 * 118.24864 * 177.75076 * 25 24 23 27 27 C 1.44601 * 120.12660 * 310.87659 * 16 15 14 28 28 H 1.09002 * 110.24543 * 164.98391 * 27 16 15 29 29 C 1.47617 * 125.63966 * 180.02562 * 9 7 2 30 30 H 0.97003 * 120.00000 * 359.97438 * 1 2 3 31 31 H 1.08995 * 110.47726 * 61.09405 * 10 9 7 32 32 H 1.08997 * 109.76931 * 299.58433 * 10 9 7 33 33 H 1.09004 * 109.69435 * 55.09707 * 14 13 11 34 34 H 1.09007 * 109.69702 * 175.65350 * 14 13 11 35 35 H 1.08994 * 109.90175 * 175.37451 * 15 14 13 36 36 H 1.08999 * 109.89639 * 296.42946 * 15 14 13 37 37 H 1.09004 * 109.67346 * 310.70651 * 21 19 17 38 38 H 1.09010 * 109.67077 * 71.23806 * 21 19 17 39 39 H 1.08995 * 109.59169 * 307.75348 * 22 21 19 40 40 H 1.08994 * 109.74226 * 187.34971 * 22 21 19 41 41 H 1.09000 * 109.29605 * 188.94350 * 23 22 21 42 42 H 1.08993 * 109.13463 * 69.46333 * 23 22 21 43 43 H 0.97006 * 117.94581 * 199.07608 * 24 23 22 44 44 H 1.08999 * 110.42046 * 37.70496 * 29 9 7 45 45 H 1.09005 * 110.51914 * 275.28601 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1475 -2.5308 -0.0131 11 6 -0.4484 -4.0502 0.0059 12 1 -1.3211 -4.2876 0.6143 13 8 -0.6173 -4.4636 -1.3503 14 6 -0.6151 -5.8719 -1.5755 15 6 0.7739 -6.4163 -1.2112 16 7 1.0463 -6.0204 0.1785 17 6 1.4723 -6.9370 1.0699 18 8 1.7812 -6.5943 2.1915 19 6 1.5650 -8.3879 0.6730 20 1 1.8687 -8.4588 -0.3714 21 6 0.1969 -9.0516 0.8490 22 6 0.3721 -10.5683 0.7086 23 6 1.1877 -11.0793 1.8970 24 7 2.4035 -10.2915 2.0577 25 6 2.5822 -9.0773 1.5362 26 8 3.6219 -8.4989 1.7714 27 6 0.8476 -4.6499 0.5949 28 1 0.8355 -4.5843 1.6828 29 6 1.9343 -3.7328 -0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5666 -2.0810 -0.9131 32 1 -0.5713 -2.0577 0.8727 33 1 -1.3713 -6.3453 -0.9492 34 1 -0.8269 -6.0765 -2.6251 35 1 0.7803 -7.5030 -1.2955 36 1 1.5257 -5.9884 -1.8743 37 1 -0.1999 -8.8181 1.8370 38 1 -0.4882 -8.6888 0.0826 39 1 0.8988 -10.7911 -0.2193 40 1 -0.6044 -11.0525 0.7001 41 1 1.4541 -12.1228 1.7291 42 1 0.5862 -11.0023 2.8027 43 1 3.1280 -10.6745 2.5768 44 1 2.8274 -3.7459 0.6242 45 1 2.1776 -4.0421 -1.0171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083111771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:20 Heat of formation + Delta-G solvation = -97.452598 kcal Electronic energy + Delta-G solvation = -29141.330569 eV Core-core repulsion = 25158.877114 eV Total energy + Delta-G solvation = -3982.453455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.35983 -41.10829 -39.42848 -37.62219 -37.38939 -36.08487 -34.52733 -33.82721 -31.51047 -30.99679 -29.28794 -29.03069 -26.64058 -25.71141 -24.50989 -23.90236 -22.51720 -22.12761 -20.43618 -19.63922 -19.12292 -18.90002 -18.23557 -17.93489 -17.35506 -16.95960 -16.55316 -16.32883 -16.17022 -15.92800 -15.52647 -15.30928 -15.18803 -14.91563 -14.86491 -14.44937 -14.33712 -14.14005 -13.73714 -13.51636 -13.04376 -12.94549 -12.80983 -12.76399 -12.56590 -12.47651 -12.24959 -12.15846 -12.03661 -11.93913 -11.83453 -11.47273 -11.09980 -10.90385 -10.81656 -10.79093 -10.06271 -9.64599 -8.97077 -7.89777 -5.26276 1.30441 1.40136 1.44525 1.46064 1.56646 1.82652 2.32201 2.47500 2.81534 3.16459 3.29781 3.42505 3.47620 3.58338 3.67196 3.81017 3.84634 3.98665 4.01743 4.05263 4.19991 4.25477 4.30152 4.38182 4.52390 4.57314 4.72723 4.73055 4.79792 4.81114 4.90066 4.93364 5.03668 5.10486 5.31845 5.33984 5.37067 5.42311 5.63762 5.82345 6.10603 6.18292 6.28225 6.39298 6.96032 7.02963 7.17821 7.66487 8.31718 9.21331 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.003368 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.327991 B = 8310.310868 C = 9060.862510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.983 3.017 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.623 5.623 10 C 0.197 3.803 11 C 0.081 3.919 12 H 0.094 0.906 13 O -0.390 6.390 14 C 0.041 3.959 15 C 0.062 3.938 16 N -0.592 5.592 17 C 0.523 3.477 18 O -0.575 6.575 19 C -0.116 4.116 20 H 0.155 0.845 21 C -0.112 4.112 22 C -0.127 4.127 23 C 0.096 3.904 24 N -0.710 5.710 25 C 0.526 3.474 26 O -0.596 6.596 27 C 0.116 3.884 28 H 0.083 0.917 29 C 0.138 3.862 30 H 0.251 0.749 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.072 0.928 43 H 0.404 0.596 44 H 0.022 0.978 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.751 -29.531 -3.563 30.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.811 3.189 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.351 5.351 10 C 0.072 3.928 11 C 0.022 3.978 12 H 0.112 0.888 13 O -0.309 6.309 14 C -0.035 4.035 15 C -0.059 4.059 16 N -0.324 5.324 17 C 0.312 3.688 18 O -0.453 6.453 19 C -0.140 4.140 20 H 0.172 0.828 21 C -0.150 4.150 22 C -0.165 4.165 23 C -0.026 4.026 24 N -0.360 5.360 25 C 0.312 3.688 26 O -0.477 6.477 27 C 0.009 3.991 28 H 0.101 0.899 29 C 0.011 3.989 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.141 0.859 41 H 0.129 0.871 42 H 0.090 0.910 43 H 0.240 0.760 44 H 0.041 0.959 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.312 -28.646 -3.139 29.303 hybrid contribution 1.109 1.318 0.761 1.883 sum -4.204 -27.328 -2.377 27.751 Atomic orbital electron populations 1.70121 1.06127 1.25578 1.57775 1.25648 0.96764 1.00897 1.02023 0.84950 0.77894 0.79072 0.77003 1.19512 1.21300 1.21526 1.19442 0.90833 0.83581 1.43879 0.90562 1.44869 1.02314 1.00551 1.87330 1.21236 0.83582 0.88783 0.99180 1.23592 0.95046 0.95360 0.83789 0.88816 1.87895 1.93353 1.24334 1.25342 1.23316 0.95012 0.80727 1.04453 1.23015 0.99116 1.03580 0.80171 1.47370 1.66172 1.07148 1.11733 1.20721 0.75561 0.88163 0.84344 1.90731 1.49165 1.82091 1.23349 1.21486 0.99332 0.90052 1.03152 0.82780 1.21782 0.91718 0.96973 1.04510 1.21949 1.03084 0.92825 0.98596 1.21832 0.84714 0.96105 0.99984 1.45438 1.20521 1.16641 1.53433 1.19763 0.87102 0.81855 0.80128 1.90791 1.30689 1.64626 1.61593 1.21740 0.96328 0.81443 0.99560 0.89856 1.21633 0.94665 0.85366 0.97196 0.93983 0.95232 0.95019 0.90620 0.84455 0.84003 0.90741 0.91871 0.86871 0.88937 0.85877 0.87072 0.90960 0.76010 0.95932 0.95368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.26 10.32 21.65 0.22 -58.04 16 2 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 3 Si 0.98 47.77 29.55 68.60 2.03 49.79 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.25 -14.98 10.28 84.03 0.86 -14.11 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.62 -34.90 3.42 -689.35 -2.36 -37.26 16 10 C 0.20 10.24 5.10 86.74 0.44 10.68 16 11 C 0.08 3.17 3.99 31.74 0.13 3.30 16 12 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 13 O -0.39 -13.46 10.00 -148.98 -1.49 -14.95 16 14 C 0.04 0.82 7.02 72.17 0.51 1.32 16 15 C 0.06 1.22 6.16 86.47 0.53 1.75 16 16 N -0.59 -17.88 2.71 -794.75 -2.16 -20.04 16 17 C 0.52 16.56 6.47 87.66 0.57 17.13 16 18 O -0.58 -24.97 15.14 13.91 0.21 -24.76 16 19 C -0.12 -2.27 1.92 -12.43 -0.02 -2.30 16 20 H 0.15 2.01 6.32 -2.39 -0.02 1.99 16 21 C -0.11 -1.10 5.22 30.73 0.16 -0.94 16 22 C -0.13 -0.33 6.02 30.68 0.18 -0.15 16 23 C 0.10 0.53 7.17 86.50 0.62 1.15 16 24 N -0.71 -11.03 5.45 -467.32 -2.55 -13.57 16 25 C 0.53 13.34 6.90 87.71 0.60 13.94 16 26 O -0.60 -22.73 16.66 13.92 0.23 -22.50 16 27 C 0.12 4.63 3.15 46.24 0.15 4.78 16 28 H 0.08 3.77 7.09 -2.39 -0.02 3.76 16 29 C 0.14 6.60 6.79 86.56 0.59 7.18 16 30 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.03 1.71 7.37 -2.39 -0.02 1.70 16 32 H 0.03 1.81 7.40 -2.39 -0.02 1.79 16 33 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.14 1.79 8.14 -2.38 -0.02 1.78 16 35 H 0.14 1.27 4.98 -2.39 -0.01 1.26 16 36 H 0.07 1.66 7.59 -2.39 -0.02 1.65 16 37 H 0.06 0.88 8.09 -2.38 -0.02 0.86 16 38 H 0.11 0.53 7.63 -2.38 -0.02 0.51 16 39 H 0.09 0.05 8.12 -2.39 -0.02 0.03 16 40 H 0.12 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.07 0.38 8.14 -2.39 -0.02 0.37 16 43 H 0.40 5.91 8.80 -92.70 -0.82 5.10 16 44 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.03 1.32 7.33 -2.38 -0.02 1.31 16 Total: -1.00 -93.09 350.09 0.13 -92.96 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.20 Total: 7.72 kcal Atomic # 6 Polarization: 34.86 SS G_CDS: 5.78 Total: 40.64 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -6.84 Total: -128.91 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -1.05 Total: -62.21 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.79 kcal Total: -93.09 0.13 -92.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083111771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.493 kcal (2) G-P(sol) polarization free energy of solvation -93.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds