Wall clock time and date at job start Fri Apr 10 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00223 * 2 1 4 4 H 1.48494 * 109.47308 * 240.00085 * 3 2 1 5 5 H 1.48502 * 109.47193 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47321 * 119.99881 * 3 2 1 7 7 C 1.38817 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99860 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99728 * 0.02562 * 7 2 1 10 10 C 1.46772 * 125.36660 * 0.02562 * 9 7 2 11 11 C 1.53909 * 107.63033 * 178.83243 * 10 9 7 12 12 H 1.09004 * 109.52576 * 100.77647 * 11 10 9 13 13 O 1.40850 * 110.30363 * 221.41092 * 11 10 9 14 14 C 1.41326 * 118.31084 * 68.00710 * 13 11 10 15 15 C 1.51968 * 111.60553 * 56.89272 * 14 13 11 16 16 N 1.44956 * 111.93842 * 319.69851 * 15 14 13 17 17 C 1.34777 * 117.33972 * 203.72871 * 16 15 14 18 18 O 1.21277 * 120.00536 * 185.86552 * 17 16 15 19 19 C 1.50701 * 119.99442 * 5.86699 * 17 16 15 20 20 H 1.08994 * 109.30317 * 326.39471 * 19 17 16 21 21 C 1.52921 * 109.13266 * 85.88276 * 19 17 16 22 22 C 1.53350 * 108.67212 * 170.95757 * 21 19 17 23 23 C 1.53076 * 108.41324 * 292.45014 * 22 21 19 24 24 C 1.50177 * 109.89044 * 48.91019 * 23 22 21 25 25 O 1.21283 * 118.24298 * 162.70195 * 24 23 22 26 26 N 1.33356 * 123.50887 * 342.42794 * 24 23 22 27 27 C 1.44549 * 125.32609 * 24.01398 * 16 15 14 28 28 H 1.08998 * 109.64476 * 106.18099 * 27 16 15 29 29 C 1.46873 * 125.36124 * 180.02562 * 9 7 2 30 30 H 0.97008 * 120.00071 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.81921 * 59.30574 * 10 9 7 32 32 H 1.09001 * 109.82551 * 298.36342 * 10 9 7 33 33 H 1.09004 * 109.04809 * 296.34960 * 14 13 11 34 34 H 1.08992 * 109.05679 * 177.44456 * 14 13 11 35 35 H 1.08999 * 108.98425 * 199.06377 * 15 14 13 36 36 H 1.08996 * 108.91928 * 80.28733 * 15 14 13 37 37 H 1.09005 * 109.60220 * 290.70690 * 21 19 17 38 38 H 1.08993 * 109.61085 * 51.19633 * 21 19 17 39 39 H 1.08994 * 109.67369 * 52.19844 * 22 21 19 40 40 H 1.09003 * 109.66874 * 172.69265 * 22 21 19 41 41 H 1.09005 * 109.39809 * 288.78576 * 23 22 21 42 42 H 1.09000 * 109.40030 * 169.04324 * 23 22 21 43 43 H 0.96997 * 117.94715 * 182.21993 * 26 24 23 44 44 H 1.09000 * 110.06586 * 317.00822 * 29 9 7 45 45 H 1.08997 * 110.06810 * 78.47587 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1358 -2.5252 -0.0005 11 6 -0.4628 -4.0289 -0.0300 12 1 -0.7268 -4.3640 0.9731 13 8 -1.5358 -4.2786 -0.9077 14 6 -1.3274 -4.0875 -2.2924 15 6 -0.1691 -4.9271 -2.8050 16 7 0.9396 -4.9478 -1.8715 17 6 2.1633 -5.2141 -2.3696 18 8 3.1071 -5.3488 -1.6200 19 6 2.3588 -5.3446 -3.8582 20 1 1.4642 -5.7811 -4.3021 21 6 2.5944 -3.9570 -4.4562 22 6 3.0151 -4.1192 -5.9220 23 6 4.3964 -4.7779 -5.9585 24 6 4.4093 -5.9875 -5.0685 25 8 5.2973 -6.8001 -5.2173 26 7 3.4996 -6.2133 -4.1199 27 6 0.8390 -4.7117 -0.4490 28 1 0.9518 -5.6537 0.0877 29 6 1.9377 -3.7231 0.0016 30 1 -0.4851 0.8401 -0.0004 31 1 -0.5520 -2.0390 -0.8829 32 1 -0.5501 -2.0744 0.9013 33 1 -1.1135 -3.0349 -2.4780 34 1 -2.2337 -4.3653 -2.8303 35 1 0.1741 -4.5158 -3.7543 36 1 -0.5163 -5.9477 -2.9659 37 1 1.6747 -3.3745 -4.4021 38 1 3.3845 -3.4496 -3.9030 39 1 2.2941 -4.7487 -6.4432 40 1 3.0617 -3.1410 -6.4006 41 1 5.1462 -4.0662 -5.6130 42 1 4.6275 -5.0779 -6.9806 43 1 3.6039 -7.0050 -3.5693 44 1 2.7748 -3.7512 -0.6959 45 1 2.2787 -3.9773 1.0051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083114440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:27 Heat of formation + Delta-G solvation = -90.617101 kcal Electronic energy + Delta-G solvation = -29743.058754 eV Core-core repulsion = 25760.901708 eV Total energy + Delta-G solvation = -3982.157046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.49420 -41.21161 -39.76234 -37.78432 -37.23487 -36.24576 -34.35475 -33.99869 -31.76723 -31.11102 -29.57253 -28.99294 -26.80430 -25.91629 -24.64857 -23.84668 -22.87622 -21.54412 -20.23709 -19.99421 -19.18209 -18.51694 -18.41864 -18.09811 -17.48113 -16.99628 -16.49057 -16.43297 -16.28345 -16.03774 -15.68436 -15.32577 -15.18828 -15.10360 -14.71435 -14.60380 -14.33047 -14.00059 -13.82728 -13.50791 -13.15873 -13.00602 -12.82480 -12.80498 -12.65034 -12.42884 -12.19242 -12.15075 -12.01264 -11.92342 -11.84039 -11.67071 -11.17196 -10.81846 -10.74504 -10.57359 -10.09065 -9.59660 -8.92157 -7.88247 -5.24521 1.32445 1.42913 1.43590 1.45876 1.52414 1.74769 2.28808 2.45399 2.77473 3.12903 3.29727 3.50742 3.54355 3.59656 3.69327 3.72926 3.77993 3.91196 3.98116 4.07937 4.16602 4.26428 4.39108 4.41183 4.49427 4.55027 4.68968 4.73846 4.80909 4.88725 4.91496 4.99329 5.00667 5.06212 5.24932 5.39212 5.48431 5.54528 5.60021 5.65583 6.11333 6.15298 6.23971 6.43323 6.96807 7.07385 7.09654 7.72429 8.34132 9.20283 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.004881 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.184282 B = 5735.332046 C = 6880.164257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.053 4.053 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.165 3.835 11 C 0.087 3.913 12 H 0.123 0.877 13 O -0.373 6.373 14 C 0.049 3.951 15 C 0.065 3.935 16 N -0.582 5.582 17 C 0.492 3.508 18 O -0.560 6.560 19 C 0.134 3.866 20 H 0.142 0.858 21 C -0.131 4.131 22 C -0.107 4.107 23 C -0.135 4.135 24 C 0.520 3.480 25 O -0.606 6.606 26 N -0.698 5.698 27 C 0.122 3.878 28 H 0.090 0.910 29 C 0.118 3.882 30 H 0.249 0.751 31 H 0.031 0.969 32 H 0.012 0.988 33 H 0.034 0.966 34 H 0.148 0.852 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.398 0.602 44 H 0.056 0.944 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 -10.683 -13.919 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.246 4.246 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.343 5.343 10 C 0.039 3.961 11 C 0.027 3.973 12 H 0.141 0.859 13 O -0.290 6.290 14 C -0.027 4.027 15 C -0.057 4.057 16 N -0.315 5.315 17 C 0.280 3.720 18 O -0.439 6.439 19 C 0.026 3.974 20 H 0.159 0.841 21 C -0.170 4.170 22 C -0.145 4.145 23 C -0.174 4.174 24 C 0.310 3.690 25 O -0.488 6.488 26 N -0.348 5.348 27 C 0.016 3.984 28 H 0.108 0.892 29 C -0.007 4.007 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.165 0.835 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.139 0.861 43 H 0.233 0.767 44 H 0.074 0.926 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.336 -10.796 -13.661 17.729 hybrid contribution 0.933 1.054 1.095 1.783 sum -2.404 -9.743 -12.566 16.081 Atomic orbital electron populations 1.70139 1.05921 1.25450 1.57704 1.25507 0.96566 1.00453 1.02114 0.85240 0.77298 0.79204 0.78096 1.20294 1.21460 1.20927 1.19232 0.90503 0.83697 1.43931 0.91228 1.44408 1.02051 1.00702 1.87178 1.21425 0.83947 0.91497 0.99194 1.22670 0.85546 0.94753 0.94302 0.85937 1.86890 1.36303 1.88516 1.17253 1.22570 1.00091 0.98628 0.81416 1.22162 0.87118 1.03448 0.92951 1.46745 1.08325 1.69079 1.07385 1.21440 0.82292 0.76413 0.91868 1.90686 1.41704 1.50307 1.61176 1.21194 0.91464 0.94377 0.90392 0.84100 1.21923 1.04192 0.92969 0.97870 1.21668 0.95161 1.03604 0.94036 1.21756 1.01068 0.93977 1.00603 1.20859 0.79410 0.88121 0.80658 1.90733 1.36981 1.48715 1.72366 1.45328 1.26673 1.27193 1.35597 1.21546 0.96601 0.98256 0.81966 0.89236 1.21952 0.96120 0.84494 0.98158 0.94162 0.95052 0.96952 0.94802 0.83469 0.86845 0.87617 0.87705 0.92943 0.88057 0.87766 0.88093 0.86062 0.76683 0.92598 0.96535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.78 10.26 21.65 0.22 -54.56 16 2 C -0.05 -2.94 5.48 84.86 0.47 -2.48 16 3 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.24 -13.82 10.25 84.04 0.86 -12.95 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.62 -31.57 3.39 -695.64 -2.36 -33.93 16 10 C 0.16 7.83 5.02 86.63 0.43 8.27 16 11 C 0.09 3.09 3.82 30.85 0.12 3.21 16 12 H 0.12 4.03 8.14 -2.38 -0.02 4.01 16 13 O -0.37 -11.43 10.24 -146.19 -1.50 -12.93 16 14 C 0.05 1.13 6.72 71.64 0.48 1.61 16 15 C 0.06 1.17 5.58 86.33 0.48 1.66 16 16 N -0.58 -16.08 3.08 -805.50 -2.48 -18.56 16 17 C 0.49 14.09 6.01 87.66 0.53 14.62 16 18 O -0.56 -21.14 13.88 -3.02 -0.04 -21.18 16 19 C 0.13 2.59 2.63 44.36 0.12 2.71 16 20 H 0.14 1.54 6.49 -2.39 -0.02 1.52 16 21 C -0.13 -2.40 5.12 30.69 0.16 -2.25 16 22 C -0.11 -1.24 6.03 30.74 0.19 -1.06 16 23 C -0.13 -2.22 6.03 29.71 0.18 -2.04 16 24 C 0.52 13.06 7.71 87.71 0.68 13.73 16 25 O -0.61 -20.57 17.78 -3.04 -0.05 -20.63 16 26 N -0.70 -16.12 4.79 -450.22 -2.16 -18.28 16 27 C 0.12 4.17 3.38 45.82 0.15 4.32 16 28 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 29 C 0.12 5.21 6.29 86.82 0.55 5.76 16 30 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 31 H 0.03 1.64 5.74 -2.39 -0.01 1.62 16 32 H 0.01 0.67 7.48 -2.39 -0.02 0.65 16 33 H 0.03 0.99 6.81 -2.38 -0.02 0.97 16 34 H 0.15 2.09 8.14 -2.39 -0.02 2.08 16 35 H 0.11 1.40 5.07 -2.39 -0.01 1.38 16 36 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.73 6.99 -2.38 -0.02 1.71 16 38 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.10 0.70 8.13 -2.39 -0.02 0.68 16 40 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.12 1.56 8.14 -2.39 -0.02 1.55 16 43 H 0.40 9.89 8.57 -92.71 -0.79 9.10 16 44 H 0.06 2.65 5.12 -2.39 -0.01 2.64 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -79.70 344.16 -0.72 -80.42 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.23 Total: 17.28 kcal Atomic # 6 Polarization: 29.73 SS G_CDS: 5.39 Total: 35.12 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -6.78 Total: -125.33 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -1.59 Total: -54.73 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -79.70 -0.72 -80.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083114440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.198 kcal (2) G-P(sol) polarization free energy of solvation -79.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds