Wall clock time and date at job start Fri Apr 10 2020 18:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 119.99910 * 2 1 4 4 H 1.48501 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47285 * 299.99991 * 3 2 1 6 6 H 1.48498 * 109.47535 * 59.99830 * 3 2 1 7 7 C 1.38811 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99911 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00115 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.46595 * 35.01028 * 10 9 7 12 12 C 1.52992 * 109.47408 * 275.00713 * 10 9 7 13 13 C 1.52999 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47179 * 60.00100 * 13 12 10 15 15 C 1.53005 * 109.46995 * 299.99723 * 14 13 12 16 16 C 1.52999 * 109.46528 * 155.00208 * 10 9 7 17 17 H 1.08999 * 109.47014 * 60.01075 * 16 10 9 18 18 N 1.46499 * 109.47493 * 300.00476 * 16 10 9 19 19 C 1.34777 * 119.99665 * 155.28120 * 18 16 10 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 16 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 16 22 22 C 1.52999 * 109.47004 * 179.97438 * 21 19 18 23 23 H 1.08995 * 110.54492 * 305.69978 * 22 21 19 24 24 C 1.54232 * 110.60915 * 182.84832 * 22 21 19 25 25 C 1.51316 * 103.55578 * 241.48407 * 24 22 21 26 26 O 1.21226 * 125.39127 * 180.02562 * 25 24 22 27 27 N 1.33871 * 109.20685 * 359.97438 * 25 24 22 28 28 C 1.34217 * 114.53292 * 359.90729 * 27 25 24 29 29 O 1.21221 * 125.59171 * 180.10014 * 28 27 25 30 30 H 0.97000 * 120.00145 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99829 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47499 * 299.99761 * 12 10 9 33 33 H 1.09006 * 109.47246 * 59.99770 * 12 10 9 34 34 H 1.09005 * 109.47368 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.47077 * 299.99701 * 13 12 10 36 36 H 1.08999 * 109.47056 * 60.00198 * 14 13 12 37 37 H 1.09000 * 109.46999 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.47108 * 300.00306 * 15 14 13 39 39 H 1.08995 * 109.46860 * 179.97438 * 15 14 13 40 40 H 0.97001 * 119.99790 * 334.99833 * 18 16 10 41 41 H 1.09003 * 109.47112 * 299.99065 * 21 19 18 42 42 H 1.08993 * 109.47916 * 59.99687 * 21 19 18 43 43 H 1.08995 * 110.60013 * 0.02562 * 24 22 21 44 44 H 1.08998 * 110.60528 * 122.80992 * 24 22 21 45 45 H 0.97000 * 122.75856 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9691 -3.5508 0.5873 12 6 2.4210 -4.0350 -1.4390 13 6 3.1865 -5.3597 -1.4400 14 6 2.3102 -6.4556 -0.8301 15 6 1.9472 -6.0774 0.6073 16 6 1.1812 -4.7524 0.6081 17 1 0.2701 -4.8584 0.0192 18 7 0.8336 -4.3902 1.9844 19 6 -0.2811 -4.8918 2.5522 20 8 -0.9991 -5.6389 1.9219 21 6 -0.6353 -4.5241 3.9700 22 6 -1.9373 -5.2222 4.3678 23 1 -2.7267 -4.9967 3.6508 24 6 -2.3625 -4.8080 5.7913 25 6 -2.3480 -6.1117 6.5593 26 8 -2.6242 -6.2383 7.7328 27 7 -1.9830 -7.1031 5.7371 28 6 -1.7293 -6.7171 4.4769 29 8 -1.3871 -7.4464 3.5711 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 1.5099 -4.1410 -2.0280 33 1 3.0456 -3.2544 -1.8734 34 1 3.4455 -5.6289 -2.4640 35 1 4.0976 -5.2532 -0.8512 36 1 1.3991 -6.5620 -1.4190 37 1 2.8554 -7.3994 -0.8313 38 1 2.8584 -5.9710 1.1961 39 1 1.3226 -6.8579 1.0416 40 1 1.4080 -3.7927 2.4885 41 1 0.1657 -4.8404 4.6383 42 1 -0.7651 -3.4445 4.0440 43 1 -1.6466 -4.1042 6.2158 44 1 -3.3633 -4.3763 5.7824 45 1 -1.9094 -8.0256 6.0276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085441952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:54 Heat of formation + Delta-G solvation = -134.541513 kcal Electronic energy + Delta-G solvation = -28113.513925 eV Core-core repulsion = 24129.452174 eV Total energy + Delta-G solvation = -3984.061751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.79786 -40.89842 -39.67962 -39.00864 -36.93068 -35.78109 -34.96170 -34.47950 -32.95158 -30.92735 -29.77631 -28.79415 -26.13849 -25.55970 -23.57221 -22.66794 -22.48015 -21.83756 -21.17838 -20.54969 -19.13273 -18.91992 -18.11248 -17.54901 -17.31689 -17.01076 -16.56642 -16.42213 -15.77123 -15.57761 -15.41679 -15.17845 -14.97497 -14.82231 -14.65502 -14.59234 -14.11997 -13.87473 -13.69454 -13.56474 -13.34563 -12.92790 -12.88220 -12.80434 -12.19560 -12.17119 -12.13447 -11.98494 -11.97983 -11.68172 -11.61192 -11.41644 -11.36711 -11.08260 -10.99231 -10.91740 -10.55088 -9.78507 -8.94480 -7.87138 -5.15383 0.50423 1.51104 1.53455 1.61584 1.74004 1.81188 1.88689 2.36749 2.60629 3.17642 3.25656 3.42862 3.47298 3.72785 3.73935 3.86119 4.04361 4.17858 4.28101 4.33130 4.38334 4.46772 4.54713 4.57705 4.61902 4.71645 4.72989 4.85382 4.92818 4.96658 5.05185 5.08171 5.21407 5.25362 5.31262 5.32917 5.49562 5.57221 5.62637 5.64822 5.78301 6.31650 6.33179 6.77453 6.89968 7.40435 7.49316 8.13895 8.38801 9.35990 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.003683 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.419633 B = 7601.684213 C = 9610.671223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.303 1.303 6 H -0.294 1.294 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.729 5.729 10 C 0.174 3.826 11 H 0.058 0.942 12 C -0.129 4.129 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.113 4.113 16 C 0.152 3.848 17 H 0.049 0.951 18 N -0.710 5.710 19 C 0.495 3.505 20 O -0.565 6.565 21 C -0.122 4.122 22 C -0.105 4.105 23 H 0.127 0.873 24 C -0.139 4.139 25 C 0.537 3.463 26 O -0.523 6.523 27 N -0.679 5.679 28 C 0.527 3.473 29 O -0.491 6.491 30 H 0.248 0.752 31 H 0.370 0.630 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.408 0.592 41 H 0.121 0.879 42 H 0.138 0.862 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 -11.801 10.772 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.262 4.262 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.231 1.231 6 H -0.221 1.221 7 C -0.361 4.361 8 H 0.095 0.905 9 N -0.368 5.368 10 C 0.066 3.934 11 H 0.076 0.924 12 C -0.170 4.170 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.152 4.152 16 C 0.046 3.954 17 H 0.067 0.933 18 N -0.360 5.360 19 C 0.282 3.718 20 O -0.443 6.443 21 C -0.162 4.162 22 C -0.127 4.127 23 H 0.145 0.855 24 C -0.178 4.178 25 C 0.328 3.672 26 O -0.398 6.398 27 N -0.345 5.345 28 C 0.315 3.685 29 O -0.361 6.361 30 H 0.057 0.943 31 H 0.201 0.799 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.244 0.756 41 H 0.139 0.861 42 H 0.156 0.844 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 0.969 -12.492 10.399 16.283 hybrid contribution -0.028 0.746 -0.126 0.757 sum 0.940 -11.746 10.273 15.633 Atomic orbital electron populations 1.69829 1.06513 1.25616 1.59874 1.25403 0.96107 1.00544 1.04164 0.85200 0.78368 0.80609 0.76311 1.19108 1.23079 1.22116 1.19592 0.91321 0.84891 1.40285 0.90502 1.42559 1.05195 1.00588 1.88488 1.20626 0.93893 0.84419 0.94509 0.92426 1.22105 0.99397 0.97290 0.98239 1.21505 0.98347 0.93423 1.01413 1.21472 0.99716 0.98985 0.94753 1.21783 0.99876 0.95484 0.98102 1.21022 0.97275 0.94347 0.82749 0.93256 1.45867 1.26025 1.49427 1.14673 1.21163 0.80523 0.79865 0.90207 1.90753 1.51256 1.36878 1.65436 1.21672 0.97278 1.04687 0.92514 1.21829 1.00742 0.90232 0.99879 0.85494 1.22677 1.09014 0.95290 0.90849 1.21150 0.72600 0.88068 0.85424 1.90809 1.46980 1.86108 1.15872 1.44924 1.62946 1.13993 1.12594 1.21168 0.74186 0.92415 0.80723 1.90874 1.42299 1.61368 1.41573 0.94309 0.79872 0.94225 0.93168 0.91036 0.90955 0.93097 0.89910 0.90517 0.93137 0.75648 0.86085 0.84388 0.82948 0.83321 0.74411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.36 13.06 21.65 0.28 -56.08 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.96 43.74 29.55 68.60 2.03 45.77 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.23 -11.67 9.93 84.03 0.83 -10.83 16 8 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 9 N -0.73 -33.76 4.95 -322.95 -1.60 -35.36 16 10 C 0.17 6.28 2.29 44.99 0.10 6.38 16 11 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 12 C -0.13 -4.37 5.50 30.59 0.17 -4.20 16 13 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 14 C -0.11 -2.76 5.92 30.60 0.18 -2.58 16 15 C -0.11 -3.14 5.49 30.62 0.17 -2.97 16 16 C 0.15 5.03 1.98 45.01 0.09 5.12 16 17 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 18 N -0.71 -21.06 4.91 -442.44 -2.17 -23.24 16 19 C 0.50 14.56 7.47 87.66 0.66 15.21 16 20 O -0.56 -21.29 13.42 18.25 0.24 -21.05 16 21 C -0.12 -2.13 5.02 29.85 0.15 -1.98 16 22 C -0.10 -1.73 2.69 -10.92 -0.03 -1.76 16 23 H 0.13 2.34 7.96 -2.39 -0.02 2.32 16 24 C -0.14 -1.32 6.67 30.46 0.20 -1.12 16 25 C 0.54 8.46 8.55 87.99 0.75 9.21 16 26 O -0.52 -11.78 18.02 -2.86 -0.05 -11.83 16 27 N -0.68 -11.15 5.49 -427.37 -2.34 -13.49 16 28 C 0.53 11.52 7.74 87.94 0.68 12.20 16 29 O -0.49 -15.67 15.65 18.44 0.29 -15.38 16 30 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.37 19.27 7.80 -92.71 -0.72 18.54 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.41 10.88 8.60 -92.71 -0.80 10.08 16 41 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.15 0.71 7.74 -2.39 -0.02 0.70 16 44 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.42 5.93 8.96 -92.71 -0.83 5.09 16 Total: -1.00 -75.61 369.49 -0.03 -75.64 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -1.31 Total: 38.19 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 4.60 Total: 16.84 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -5.83 Total: -128.17 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: 0.48 Total: -48.27 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -75.61 -0.03 -75.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085441952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.902 kcal (2) G-P(sol) polarization free energy of solvation -75.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds