Wall clock time and date at job start Fri Apr 10 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35718 * 116.99922 * 2 1 4 4 C 1.39360 * 120.36086 * 359.97438 * 3 2 1 5 5 N 1.31285 * 120.88447 * 179.97438 * 4 3 2 6 6 C 1.32894 * 121.71504 * 359.97438 * 5 4 3 7 7 C 1.47761 * 119.68237 * 179.72778 * 6 5 4 8 8 O 1.21574 * 119.99504 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00186 * 359.97438 * 7 6 5 10 10 C 1.46508 * 119.99935 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47019 * 180.02562 * 10 9 7 12 12 H 1.08997 * 112.85322 * 43.80516 * 11 10 9 13 13 C 1.53789 * 113.61409 * 175.00253 * 11 10 9 14 14 C 1.53775 * 87.08317 * 139.98090 * 13 11 10 15 15 H 1.09000 * 113.61517 * 219.94004 * 14 13 11 16 16 N 1.46499 * 113.61878 * 89.11424 * 14 13 11 17 17 C 1.36936 * 120.00159 * 154.99700 * 16 14 13 18 18 H 1.07999 * 119.99996 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00037 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00177 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46898 * 90.00418 * 21 19 17 23 23 H 1.48496 * 109.46940 * 210.00337 * 21 19 17 24 24 H 1.48501 * 109.46920 * 330.00723 * 21 19 17 25 25 C 1.53786 * 113.61353 * 272.49566 * 11 10 9 26 26 C 1.39709 * 120.62641 * 0.02562 * 6 5 4 27 27 F 1.35100 * 120.46536 * 179.97438 * 26 6 5 28 28 C 1.38686 * 119.07150 * 359.97438 * 26 6 5 29 29 H 1.09005 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47141 * 299.99836 * 1 2 3 31 31 H 1.08998 * 109.47092 * 60.00356 * 1 2 3 32 32 H 1.08003 * 119.55628 * 359.97438 * 4 3 2 33 33 H 0.96999 * 120.00492 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.46802 * 300.00433 * 10 9 7 35 35 H 1.08999 * 109.46923 * 59.99949 * 10 9 7 36 36 H 1.08999 * 113.60959 * 254.52970 * 13 11 10 37 37 H 1.08997 * 113.61242 * 25.42802 * 13 11 10 38 38 H 0.96998 * 119.99941 * 335.00186 * 16 14 13 39 39 H 0.96992 * 120.00511 * 179.97438 * 20 19 17 40 40 H 1.09000 * 113.61356 * 334.56865 * 25 11 10 41 41 H 1.08995 * 113.60964 * 105.47116 * 25 11 10 42 42 H 1.07999 * 120.78786 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2935 2.3828 -0.0005 5 7 1.8788 3.5579 0.0000 6 6 3.2022 3.6793 0.0015 7 6 3.8136 5.0245 -0.0041 8 8 5.0237 5.1421 -0.0032 9 7 3.0300 6.1209 -0.0112 10 6 3.6362 7.4546 -0.0174 11 6 2.5341 8.5158 -0.0242 12 1 1.7256 8.2908 0.6712 13 6 3.0639 9.9549 0.0918 14 6 1.9960 10.3477 -0.9427 15 1 2.3464 11.0716 -1.6785 16 7 0.7102 10.7189 -0.3469 17 6 -0.1428 11.5505 -1.0222 18 1 0.1323 11.9324 -1.9943 19 6 -1.3613 11.9018 -0.4579 20 7 -1.6968 11.4360 0.7265 21 14 -2.5252 13.0356 -1.3795 22 1 -3.4344 12.2263 -2.2302 23 1 -3.3261 13.8204 -0.4059 24 1 -1.7402 13.9614 -2.2352 25 6 2.0496 8.8916 -1.4345 26 6 4.0207 2.5471 0.0021 27 9 5.3657 2.6743 0.0031 28 6 3.4333 1.2908 0.0016 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2151 2.3247 -0.0014 33 1 2.0645 6.0271 -0.0123 34 1 4.2530 7.5774 0.8730 35 1 4.2558 7.5680 -0.9069 36 1 2.9053 10.4006 1.0738 37 1 4.0856 10.0744 -0.2684 38 1 0.4630 10.3757 0.5260 39 1 -2.5481 11.6818 1.1210 40 1 2.7941 8.7204 -2.2120 41 1 1.0723 8.4790 -1.6847 42 1 4.0395 0.3971 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086383622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:10 Heat of formation + Delta-G solvation = -44.833846 kcal Electronic energy + Delta-G solvation = -26163.773362 eV Core-core repulsion = 22060.141322 eV Total energy + Delta-G solvation = -4103.632040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.30058 -41.25693 -39.77822 -38.69464 -38.09642 -34.67969 -33.25915 -32.78492 -31.14987 -30.08721 -28.28598 -27.32306 -25.05411 -24.95612 -23.83827 -23.35655 -21.73869 -20.95152 -19.09894 -18.71287 -18.27932 -17.91291 -17.20143 -16.75521 -16.65836 -16.01399 -15.86649 -15.48048 -15.24493 -15.03608 -14.80772 -14.17752 -14.10667 -13.77149 -13.70805 -13.56650 -13.13131 -13.09008 -12.87039 -12.62498 -12.27426 -12.09179 -11.89106 -11.37038 -11.03639 -10.83967 -10.57364 -10.47652 -10.18249 -10.10314 -10.04155 -9.79882 -9.68122 -9.45260 -9.16339 -8.90580 -8.85089 -6.99236 -5.80230 -3.09107 0.11885 0.47400 2.33647 2.44021 2.99408 3.36183 3.41898 3.47308 3.48916 3.64386 3.74278 3.92775 4.29461 4.41771 4.48372 4.56143 4.56926 4.79967 4.93883 5.05269 5.09160 5.15366 5.25751 5.33211 5.46327 5.65682 5.72374 5.81662 5.89388 5.98004 6.12816 6.24047 6.39816 6.42335 6.44204 6.61415 6.77798 6.92111 7.06630 7.07097 7.54091 7.69521 8.13449 8.39051 9.49653 10.07599 10.41850 11.42259 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002437 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.385077 B =11486.708223 C =13099.156838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.303 6.303 3 C 0.131 3.869 4 C 0.011 3.989 5 N -0.389 5.389 6 C 0.008 3.992 7 C 0.568 3.432 8 O -0.530 6.530 9 N -0.701 5.701 10 C 0.130 3.870 11 C -0.120 4.120 12 H 0.094 0.906 13 C -0.147 4.147 14 C 0.167 3.833 15 H 0.062 0.938 16 N -0.706 5.706 17 C -0.241 4.241 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.168 4.168 26 C 0.155 3.845 27 F -0.098 7.098 28 C -0.162 4.162 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.175 0.825 33 H 0.412 0.588 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.070 -24.390 -0.723 25.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.213 6.213 3 C 0.082 3.918 4 C -0.152 4.152 5 N -0.100 5.100 6 C -0.131 4.131 7 C 0.352 3.648 8 O -0.406 6.406 9 N -0.351 5.351 10 C 0.007 3.993 11 C -0.138 4.138 12 H 0.112 0.888 13 C -0.187 4.187 14 C 0.055 3.945 15 H 0.080 0.920 16 N -0.344 5.344 17 C -0.372 4.372 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.209 4.209 26 C 0.132 3.868 27 F -0.075 7.075 28 C -0.188 4.188 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.192 0.808 33 H 0.249 0.751 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.474 -23.540 -0.826 24.712 hybrid contribution -0.868 -0.427 -0.134 0.977 sum 6.606 -23.966 -0.960 24.879 Atomic orbital electron populations 1.23303 0.76725 1.05147 1.02399 1.86067 1.22642 1.25387 1.87228 1.20028 0.92057 0.86180 0.93549 1.23113 1.01267 0.86330 1.04444 1.67511 1.09256 1.26929 1.06296 1.21318 0.89419 0.94165 1.08204 1.17509 0.86343 0.83178 0.77722 1.90855 1.13169 1.86338 1.50284 1.45874 1.11069 1.05457 1.72745 1.21573 0.95967 0.79804 1.01985 1.22717 0.97420 0.93777 0.99915 0.88772 1.23446 0.99360 0.94442 1.01457 1.21057 0.86878 0.92794 0.93778 0.91959 1.42172 1.14976 1.56170 1.21114 1.19293 0.96987 1.20504 1.00435 0.91002 1.24761 0.98179 1.01013 0.96973 1.69659 1.23275 1.48761 1.16397 0.86172 0.80989 0.80332 0.78593 1.21707 1.21774 1.20703 1.23893 1.00672 1.01905 0.94461 1.18231 0.78757 0.92750 0.97049 1.91652 1.27189 1.96413 1.92293 1.20825 0.92917 0.97748 1.07356 0.87285 0.91613 0.91620 0.80817 0.75150 0.91515 0.91271 0.91295 0.90418 0.78098 0.93460 0.91390 0.91456 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.82 101.05 0.99 1.05 16 2 O -0.30 -1.96 10.50 -18.86 -0.20 -2.16 16 3 C 0.13 1.03 6.72 -38.86 -0.26 0.77 16 4 C 0.01 0.09 10.21 -17.37 -0.18 -0.08 16 5 N -0.39 -4.34 9.52 -9.63 -0.09 -4.43 16 6 C 0.01 0.11 6.75 -82.97 -0.56 -0.45 16 7 C 0.57 8.46 7.80 -12.37 -0.10 8.36 16 8 O -0.53 -9.33 15.30 5.30 0.08 -9.25 16 9 N -0.70 -9.67 5.54 -61.27 -0.34 -10.01 16 10 C 0.13 1.82 5.51 -4.04 -0.02 1.79 16 11 C -0.12 -1.83 3.63 -89.80 -0.33 -2.15 16 12 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 13 C -0.15 -2.37 7.39 -25.92 -0.19 -2.57 16 14 C 0.17 3.27 4.56 -67.12 -0.31 2.96 16 15 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 16 N -0.71 -17.38 5.31 -52.64 -0.28 -17.66 16 17 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 21 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.17 -2.84 7.43 -25.91 -0.19 -3.03 16 26 C 0.16 1.78 7.31 -38.87 -0.28 1.50 16 27 F -0.10 -1.28 15.54 2.25 0.03 -1.24 16 28 C -0.16 -1.40 10.10 -39.12 -0.40 -1.80 16 29 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.14 7.67 -51.94 -0.40 -0.26 16 31 H 0.07 0.14 7.67 -51.93 -0.40 -0.26 16 32 H 0.17 0.91 6.31 -52.48 -0.33 0.58 16 33 H 0.41 5.36 7.79 -40.82 -0.32 5.04 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.39 10.02 7.90 -40.82 -0.32 9.70 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -33.02 362.53 -7.20 -40.23 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.51 Total: 9.87 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.07 Total: -0.89 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.01 Total: -59.14 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.12 Total: -11.41 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.03 Total: -1.24 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.02 -7.20 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086383622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.604 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds