Wall clock time and date at job start Fri Apr 10 2020 18:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35718 * 116.99922 * 2 1 4 4 C 1.39360 * 120.36086 * 359.97438 * 3 2 1 5 5 N 1.31285 * 120.88447 * 179.97438 * 4 3 2 6 6 C 1.32894 * 121.71504 * 359.97438 * 5 4 3 7 7 C 1.47761 * 119.68237 * 179.72778 * 6 5 4 8 8 O 1.21574 * 119.99504 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00186 * 359.97438 * 7 6 5 10 10 C 1.46508 * 119.99935 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47019 * 180.02562 * 10 9 7 12 12 H 1.08997 * 112.85322 * 43.80516 * 11 10 9 13 13 C 1.53789 * 113.61409 * 175.00253 * 11 10 9 14 14 C 1.53775 * 87.08317 * 139.98090 * 13 11 10 15 15 H 1.09000 * 113.61517 * 219.94004 * 14 13 11 16 16 N 1.46499 * 113.61878 * 89.11424 * 14 13 11 17 17 C 1.36936 * 120.00159 * 154.99700 * 16 14 13 18 18 H 1.07999 * 119.99996 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00037 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00177 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46898 * 90.00418 * 21 19 17 23 23 H 1.48496 * 109.46940 * 210.00337 * 21 19 17 24 24 H 1.48501 * 109.46920 * 330.00723 * 21 19 17 25 25 C 1.53786 * 113.61353 * 272.49566 * 11 10 9 26 26 C 1.39709 * 120.62641 * 0.02562 * 6 5 4 27 27 F 1.35100 * 120.46536 * 179.97438 * 26 6 5 28 28 C 1.38686 * 119.07150 * 359.97438 * 26 6 5 29 29 H 1.09005 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47141 * 299.99836 * 1 2 3 31 31 H 1.08998 * 109.47092 * 60.00356 * 1 2 3 32 32 H 1.08003 * 119.55628 * 359.97438 * 4 3 2 33 33 H 0.96999 * 120.00492 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.46802 * 300.00433 * 10 9 7 35 35 H 1.08999 * 109.46923 * 59.99949 * 10 9 7 36 36 H 1.08999 * 113.60959 * 254.52970 * 13 11 10 37 37 H 1.08997 * 113.61242 * 25.42802 * 13 11 10 38 38 H 0.96998 * 119.99941 * 335.00186 * 16 14 13 39 39 H 0.96992 * 120.00511 * 179.97438 * 20 19 17 40 40 H 1.09000 * 113.61356 * 334.56865 * 25 11 10 41 41 H 1.08995 * 113.60964 * 105.47116 * 25 11 10 42 42 H 1.07999 * 120.78786 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2935 2.3828 -0.0005 5 7 1.8788 3.5579 0.0000 6 6 3.2022 3.6793 0.0015 7 6 3.8136 5.0245 -0.0041 8 8 5.0237 5.1421 -0.0032 9 7 3.0300 6.1209 -0.0112 10 6 3.6362 7.4546 -0.0174 11 6 2.5341 8.5158 -0.0242 12 1 1.7256 8.2908 0.6712 13 6 3.0639 9.9549 0.0918 14 6 1.9960 10.3477 -0.9427 15 1 2.3464 11.0716 -1.6785 16 7 0.7102 10.7189 -0.3469 17 6 -0.1428 11.5505 -1.0222 18 1 0.1323 11.9324 -1.9943 19 6 -1.3613 11.9018 -0.4579 20 7 -1.6968 11.4360 0.7265 21 14 -2.5252 13.0356 -1.3795 22 1 -3.4344 12.2263 -2.2302 23 1 -3.3261 13.8204 -0.4059 24 1 -1.7402 13.9614 -2.2352 25 6 2.0496 8.8916 -1.4345 26 6 4.0207 2.5471 0.0021 27 9 5.3657 2.6743 0.0031 28 6 3.4333 1.2908 0.0016 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2151 2.3247 -0.0014 33 1 2.0645 6.0271 -0.0123 34 1 4.2530 7.5774 0.8730 35 1 4.2558 7.5680 -0.9069 36 1 2.9053 10.4006 1.0738 37 1 4.0856 10.0744 -0.2684 38 1 0.4630 10.3757 0.5260 39 1 -2.5481 11.6818 1.1210 40 1 2.7941 8.7204 -2.2120 41 1 1.0723 8.4790 -1.6847 42 1 4.0395 0.3971 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086383622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:09 Heat of formation + Delta-G solvation = -68.464181 kcal Electronic energy + Delta-G solvation = -26164.798051 eV Core-core repulsion = 22060.141322 eV Total energy + Delta-G solvation = -4104.656728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.19566 -41.97974 -40.82394 -39.91040 -38.96636 -36.06221 -34.99418 -33.55556 -32.23800 -31.68932 -28.97369 -28.30378 -26.42366 -26.00923 -25.45719 -24.26114 -23.07563 -22.00155 -20.07242 -19.67473 -19.36773 -19.16576 -18.76127 -17.46074 -17.40833 -17.00366 -16.71764 -16.65776 -16.37118 -16.25399 -15.79088 -15.71668 -15.42664 -14.87369 -14.77101 -14.60560 -14.40246 -14.21809 -13.91309 -13.71718 -13.27947 -12.95418 -12.93010 -12.91199 -12.62970 -12.52687 -12.15719 -12.06663 -11.67227 -11.48502 -11.34806 -10.99635 -10.87163 -10.76811 -10.73813 -10.19174 -9.71130 -8.98621 -7.93915 -5.22218 -0.68340 -0.23201 1.48904 1.50081 1.50797 1.58631 1.78718 2.01840 2.47750 2.56944 2.86209 2.95967 3.30785 3.38388 3.50722 3.71921 3.73092 3.79520 3.87999 3.99888 4.15538 4.33278 4.38416 4.39281 4.41273 4.41547 4.66839 4.72872 4.75628 4.80800 4.94284 4.99874 5.10367 5.12452 5.24965 5.35771 5.46860 5.54784 5.67239 5.93739 6.23684 6.29769 6.51599 7.03617 7.34653 8.11849 8.34359 9.29450 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002437 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.385077 B =11486.708223 C =13099.156838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.306 6.306 3 C 0.148 3.852 4 C 0.017 3.983 5 N -0.403 5.403 6 C -0.019 4.019 7 C 0.566 3.434 8 O -0.565 6.565 9 N -0.697 5.697 10 C 0.138 3.862 11 C -0.103 4.103 12 H 0.081 0.919 13 C -0.133 4.133 14 C 0.145 3.855 15 H 0.061 0.939 16 N -0.720 5.720 17 C -0.242 4.242 18 H 0.076 0.924 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.972 3.028 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.270 1.270 25 C -0.154 4.154 26 C 0.142 3.858 27 F -0.114 7.114 28 C -0.158 4.158 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.207 0.793 33 H 0.416 0.584 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 -25.988 -1.568 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.216 6.216 3 C 0.097 3.903 4 C -0.147 4.147 5 N -0.115 5.115 6 C -0.156 4.156 7 C 0.352 3.648 8 O -0.445 6.445 9 N -0.348 5.348 10 C 0.015 3.985 11 C -0.122 4.122 12 H 0.099 0.901 13 C -0.172 4.172 14 C 0.035 3.965 15 H 0.079 0.921 16 N -0.358 5.358 17 C -0.374 4.374 18 H 0.094 0.906 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.802 3.198 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.195 1.195 25 C -0.194 4.194 26 C 0.118 3.882 27 F -0.092 7.092 28 C -0.184 4.184 29 H 0.147 0.853 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.223 0.777 33 H 0.253 0.747 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.081 -25.147 -1.705 26.181 hybrid contribution -0.798 -0.092 0.100 0.809 sum 6.283 -25.240 -1.606 26.059 Atomic orbital electron populations 1.23681 0.74599 1.06986 1.03554 1.86093 1.24760 1.24348 1.86383 1.20033 0.91808 0.86748 0.91693 1.23653 1.02692 0.85598 1.02740 1.67482 1.08537 1.28452 1.07024 1.20989 0.90290 0.93246 1.11089 1.17856 0.85995 0.84166 0.76829 1.90820 1.14558 1.87020 1.52075 1.45835 1.11204 1.05292 1.72434 1.21440 0.95254 0.79548 1.02280 1.22500 0.97255 0.93969 0.98475 0.90115 1.23347 0.99703 0.94222 0.99915 1.21376 0.85909 0.94113 0.95126 0.92063 1.42307 1.16513 1.56175 1.20791 1.19673 0.97319 1.19893 1.00472 0.90565 1.25550 1.00022 1.03188 0.98017 1.69810 1.23554 1.50593 1.18021 0.85152 0.78867 0.78515 0.77304 1.21417 1.22301 1.19486 1.23727 1.00437 0.99325 0.95949 1.18397 0.78104 0.93587 0.98068 1.91605 1.28349 1.96577 1.92639 1.21009 0.93669 0.97293 1.06437 0.85291 0.90433 0.90437 0.77703 0.74732 0.91338 0.90864 0.92249 0.87462 0.79360 0.94019 0.89018 0.93432 0.79820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.82 113.37 1.11 1.13 16 2 O -0.31 -3.00 10.50 -90.40 -0.95 -3.95 16 3 C 0.15 1.97 6.72 22.73 0.15 2.12 16 4 C 0.02 0.24 10.21 85.04 0.87 1.11 16 5 N -0.40 -8.62 9.52 -184.39 -1.76 -10.37 16 6 C -0.02 -0.47 6.75 41.86 0.28 -0.19 16 7 C 0.57 17.03 7.80 86.76 0.68 17.71 16 8 O -0.57 -20.31 15.30 -3.95 -0.06 -20.37 16 9 N -0.70 -19.11 5.54 -466.04 -2.58 -21.69 16 10 C 0.14 3.74 5.51 86.38 0.48 4.21 16 11 C -0.10 -3.08 3.63 -10.27 -0.04 -3.11 16 12 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 13 C -0.13 -4.11 7.39 31.12 0.23 -3.88 16 14 C 0.14 5.57 4.56 45.52 0.21 5.78 16 15 H 0.06 2.35 8.10 -2.39 -0.02 2.33 16 16 N -0.72 -35.80 5.31 -320.45 -1.70 -37.50 16 17 C -0.24 -13.31 9.97 84.03 0.84 -12.48 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 19 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 20 N -0.97 -58.76 13.06 21.65 0.28 -58.48 16 21 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 C -0.15 -5.04 7.43 31.12 0.23 -4.81 16 26 C 0.14 3.23 7.31 22.73 0.17 3.40 16 27 F -0.11 -3.05 15.54 44.97 0.70 -2.36 16 28 C -0.16 -2.49 10.10 22.57 0.23 -2.27 16 29 H 0.13 -0.16 8.14 -2.38 -0.02 -0.18 16 30 H 0.08 0.05 7.67 -2.39 -0.02 0.03 16 31 H 0.08 0.05 7.67 -2.39 -0.02 0.03 16 32 H 0.21 1.45 6.31 -2.91 -0.02 1.43 16 33 H 0.42 10.76 7.79 -92.71 -0.72 10.03 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 1.96 7.84 -2.39 -0.02 1.95 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.11 2.72 8.10 -2.39 -0.02 2.70 16 38 H 0.37 19.94 7.90 -92.71 -0.73 19.21 16 39 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.09 2.59 7.90 -2.39 -0.02 2.57 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -72.51 362.53 1.48 -71.03 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.38 Total: 31.02 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.90 Total: 4.89 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -5.76 Total: -128.04 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.01 Total: -24.32 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.70 Total: -2.36 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.51 1.48 -71.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086383622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.563 kcal (2) G-P(sol) polarization free energy of solvation -72.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds