Wall clock time and date at job start Fri Apr 10 2020 18:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48492 * 109.47376 * 239.99888 * 3 2 1 5 5 H 1.48504 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47264 * 119.99743 * 3 2 1 7 7 C 1.38818 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00125 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99489 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99690 * 179.97438 * 9 7 2 11 11 H 1.09006 * 110.01323 * 33.61016 * 10 9 7 12 12 C 1.54263 * 110.03615 * 272.17001 * 10 9 7 13 13 C 1.54887 * 104.19398 * 264.32853 * 12 10 9 14 14 C 1.54890 * 102.74867 * 322.05383 * 13 12 10 15 15 H 1.08998 * 110.60043 * 279.21292 * 14 13 12 16 16 C 1.53001 * 110.48805 * 156.62354 * 14 13 12 17 17 N 1.46499 * 109.46998 * 70.22600 * 16 14 13 18 18 C 1.34772 * 119.99706 * 179.97438 * 17 16 14 19 19 O 1.21279 * 120.00663 * 0.02562 * 18 17 16 20 20 C 1.50710 * 120.00027 * 180.02562 * 18 17 16 21 21 C 1.53239 * 109.62084 * 179.97438 * 20 18 17 22 22 C 1.50590 * 109.15820 * 184.66137 * 21 20 18 23 23 O 1.21233 * 119.35608 * 209.07180 * 22 21 20 24 24 N 1.34138 * 121.28145 * 29.35424 * 22 21 20 25 25 C 1.34148 * 122.58404 * 358.91936 * 24 22 21 26 26 O 1.21220 * 119.36154 * 180.80336 * 25 24 22 27 27 C 1.50589 * 121.27454 * 1.07941 * 25 24 22 28 28 C 1.53872 * 110.02972 * 154.99870 * 10 9 7 29 29 H 0.97002 * 120.00442 * 0.02562 * 1 2 3 30 30 H 0.96993 * 120.00693 * 359.97438 * 9 7 2 31 31 H 1.09002 * 110.48740 * 22.99966 * 12 10 9 32 32 H 1.08990 * 110.49142 * 145.64442 * 12 10 9 33 33 H 1.09001 * 110.75557 * 203.74450 * 13 12 10 34 34 H 1.09001 * 110.76227 * 80.36886 * 13 12 10 35 35 H 1.08998 * 109.47236 * 310.22231 * 16 14 13 36 36 H 1.09007 * 109.46912 * 190.22615 * 16 14 13 37 37 H 0.96999 * 120.00564 * 0.02562 * 17 16 14 38 38 H 1.08994 * 109.76585 * 300.46199 * 20 18 17 39 39 H 1.09003 * 109.52192 * 64.75642 * 21 20 18 40 40 H 1.08998 * 109.57757 * 304.60086 * 21 20 18 41 41 H 0.97001 * 118.70905 * 179.17785 * 24 22 21 42 42 H 1.09002 * 109.52021 * 210.74466 * 27 25 24 43 43 H 1.09001 * 109.57645 * 90.58810 * 27 25 24 44 44 H 1.09001 * 110.03341 * 0.02562 * 28 10 9 45 45 H 1.08997 * 110.03465 * 238.57114 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9833 -3.5534 0.5675 12 6 2.3698 -4.0871 -1.4477 13 6 1.2215 -5.0613 -1.8100 14 6 0.9997 -5.8353 -0.4868 15 1 1.7391 -6.6287 -0.3780 16 6 -0.4159 -6.4138 -0.4357 17 7 -0.5327 -7.5051 -1.4060 18 6 -1.6988 -8.1681 -1.5372 19 8 -2.6515 -7.8610 -0.8525 20 6 -1.8189 -9.2912 -2.5350 21 6 -3.2353 -9.8739 -2.4858 22 6 -3.3111 -11.0667 -3.4019 23 8 -4.3681 -11.3486 -3.9244 24 7 -2.2331 -11.8266 -3.6465 25 6 -1.0292 -11.5650 -3.1157 26 8 -0.0909 -12.2825 -3.3880 27 6 -0.8223 -10.4008 -2.1832 28 6 1.1869 -4.7683 0.6115 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.3613 -3.2234 -2.1125 32 1 3.3320 -4.5969 -1.4955 33 1 1.5270 -5.7390 -2.6073 34 1 0.3231 -4.5120 -2.0915 35 1 -1.1365 -5.6329 -0.6785 36 1 -0.6167 -6.7948 0.5657 37 1 0.2292 -7.7511 -1.9535 38 1 -1.6111 -8.9174 -3.5375 39 1 -3.9513 -9.1189 -2.8108 40 1 -3.4683 -10.1819 -1.4665 41 1 -2.3270 -12.5933 -4.2332 42 1 0.1950 -10.0243 -2.2908 43 1 -0.9844 -10.7234 -1.1547 44 1 0.2190 -4.3639 0.9076 45 1 1.6897 -5.2050 1.4744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086828104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:12 Heat of formation + Delta-G solvation = -142.935254 kcal Electronic energy + Delta-G solvation = -26885.064887 eV Core-core repulsion = 22900.639156 eV Total energy + Delta-G solvation = -3984.425731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.63631 -40.81260 -39.96736 -39.43386 -36.60772 -36.24489 -35.03712 -34.72729 -32.44924 -30.35972 -29.80875 -28.84021 -26.68175 -25.33011 -24.49987 -24.19369 -21.65547 -20.96386 -20.59012 -20.33123 -19.11808 -18.89238 -18.44256 -18.12928 -17.25649 -16.95715 -16.63224 -16.44481 -16.24856 -15.76082 -15.64874 -15.46917 -15.34058 -15.13622 -14.89873 -14.46508 -14.21188 -14.15795 -13.50822 -13.40993 -13.07364 -12.92031 -12.48766 -12.43025 -12.36533 -12.29568 -12.15327 -11.98635 -11.88594 -11.64304 -11.58216 -11.44852 -11.40276 -11.37320 -11.33811 -10.86796 -10.78968 -10.03191 -8.93454 -7.91525 -5.18355 0.39910 1.47495 1.49869 1.55863 1.55970 1.67243 1.71555 2.16755 2.58358 2.88623 3.31034 3.40209 3.44996 3.59995 3.74567 3.85716 3.90602 3.96804 4.12563 4.26813 4.40688 4.50064 4.55847 4.62916 4.68314 4.74560 4.76899 4.85864 4.87950 4.91244 4.98368 5.04174 5.14675 5.22159 5.28290 5.43182 5.49236 5.56050 5.64877 5.72388 5.74924 6.28538 6.32351 6.57986 6.74158 7.26315 7.36993 8.18503 8.38333 9.31920 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.002098 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.959458 B =13345.486647 C =13861.765633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.969 3.031 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.279 1.279 7 C -0.235 4.235 8 H 0.074 0.926 9 N -0.734 5.734 10 C 0.159 3.841 11 H 0.041 0.959 12 C -0.141 4.141 13 C -0.106 4.106 14 C -0.083 4.083 15 H 0.114 0.886 16 C 0.133 3.867 17 N -0.707 5.707 18 C 0.523 3.477 19 O -0.575 6.575 20 C -0.099 4.099 21 C -0.121 4.121 22 C 0.541 3.459 23 O -0.538 6.538 24 N -0.672 5.672 25 C 0.540 3.460 26 O -0.531 6.531 27 C -0.129 4.129 28 C -0.118 4.118 29 H 0.249 0.751 30 H 0.370 0.630 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.418 0.582 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.415 0.585 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.049 0.951 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.548 -25.826 -5.601 26.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.798 3.202 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.367 4.367 8 H 0.092 0.908 9 N -0.374 5.374 10 C 0.051 3.949 11 H 0.059 0.941 12 C -0.181 4.181 13 C -0.144 4.144 14 C -0.102 4.102 15 H 0.132 0.868 16 C 0.009 3.991 17 N -0.359 5.359 18 C 0.309 3.691 19 O -0.454 6.454 20 C -0.121 4.121 21 C -0.161 4.161 22 C 0.331 3.669 23 O -0.412 6.412 24 N -0.336 5.336 25 C 0.330 3.670 26 O -0.406 6.406 27 C -0.168 4.168 28 C -0.157 4.157 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.256 0.744 38 H 0.156 0.844 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.255 0.745 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.068 0.932 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.009 -25.804 -5.356 26.354 hybrid contribution -0.050 1.054 -0.486 1.161 sum -0.041 -24.750 -5.842 25.430 Atomic orbital electron populations 1.69807 1.06566 1.25890 1.59999 1.25519 0.96314 1.00981 1.04343 0.85275 0.77193 0.79566 0.78136 1.20499 1.22502 1.20473 1.19603 0.91365 0.85491 1.40285 0.90795 1.42758 1.05231 1.01025 1.88435 1.21169 0.94041 0.85125 0.94548 0.94104 1.22959 0.98840 0.98368 0.97953 1.22456 0.97507 0.97226 0.97170 1.22118 0.95761 0.97456 0.94878 0.86788 1.21295 0.96662 0.88576 0.92594 1.45850 1.14120 1.34763 1.41199 1.20440 0.82406 0.83050 0.83218 1.90776 1.39089 1.68228 1.47297 1.21436 0.95089 0.93891 1.01673 1.21763 0.98400 0.94529 1.01410 1.21071 0.82080 0.83797 0.79954 1.90815 1.29583 1.71212 1.49622 1.44886 1.10585 1.30937 1.47205 1.21075 0.80675 0.86027 0.79181 1.90831 1.40754 1.50066 1.58906 1.22047 1.03273 0.90665 1.00833 1.22382 0.99627 0.95223 0.98438 0.94232 0.79789 0.94663 0.90418 0.89065 0.94075 0.93797 0.91368 0.74385 0.84414 0.86471 0.85337 0.74502 0.83576 0.84649 0.93210 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 45.99 29.55 68.60 2.03 48.01 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.24 -12.85 9.96 84.03 0.84 -12.02 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.73 -35.84 5.08 -319.50 -1.62 -37.46 16 10 C 0.16 5.72 3.55 45.71 0.16 5.89 16 11 H 0.04 1.51 8.09 -2.38 -0.02 1.49 16 12 C -0.14 -4.25 6.54 31.67 0.21 -4.04 16 13 C -0.11 -2.40 6.19 31.88 0.20 -2.20 16 14 C -0.08 -1.55 2.89 -9.72 -0.03 -1.58 16 15 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 16 C 0.13 2.50 4.96 86.38 0.43 2.93 16 17 N -0.71 -8.18 5.36 -463.05 -2.48 -10.66 16 18 C 0.52 7.17 7.16 87.66 0.63 7.79 16 19 O -0.57 -13.67 15.95 -3.03 -0.05 -13.72 16 20 C -0.10 -0.61 2.66 -11.38 -0.03 -0.64 16 21 C -0.12 -1.16 4.70 29.89 0.14 -1.02 16 22 C 0.54 6.69 7.74 87.72 0.68 7.37 16 23 O -0.54 -11.23 17.88 -2.88 -0.05 -11.29 16 24 N -0.67 -6.42 5.09 -428.62 -2.18 -8.61 16 25 C 0.54 4.94 7.74 87.72 0.68 5.62 16 26 O -0.53 -8.85 17.87 -2.84 -0.05 -8.90 16 27 C -0.13 -0.42 5.24 29.89 0.16 -0.26 16 28 C -0.12 -3.23 6.14 31.32 0.19 -3.04 16 29 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.37 19.71 7.52 -92.71 -0.70 19.01 16 31 H 0.03 1.32 8.04 -2.39 -0.02 1.30 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.17 7.97 -2.39 -0.02 1.15 16 35 H 0.04 1.13 8.02 -2.39 -0.02 1.11 16 36 H 0.07 1.33 8.14 -2.38 -0.02 1.32 16 37 H 0.42 1.95 8.03 -92.71 -0.74 1.20 16 38 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.13 1.16 7.98 -2.39 -0.02 1.14 16 41 H 0.42 3.81 8.79 -92.71 -0.81 2.99 16 42 H 0.15 -0.12 7.77 -2.39 -0.02 -0.14 16 43 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.05 1.61 7.31 -2.39 -0.02 1.60 16 45 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.78 372.91 -0.63 -80.41 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -1.22 Total: 20.80 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 4.72 Total: 0.69 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -6.01 Total: -116.01 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.15 Total: -33.91 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -79.78 -0.63 -80.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086828104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.529 kcal (2) G-P(sol) polarization free energy of solvation -79.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds