Wall clock time and date at job start Fri Apr 10 2020 18:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47320 * 240.00760 * 3 2 1 5 5 H 1.48503 * 109.46920 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47125 * 119.99948 * 3 2 1 7 7 C 1.38811 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00332 * 359.97438 * 7 2 1 10 10 C 1.47293 * 126.46862 * 359.93594 * 9 7 2 11 11 C 1.53842 * 106.21045 * 210.81233 * 10 9 7 12 12 C 1.53674 * 105.62921 * 340.80481 * 11 10 9 13 13 C 1.52995 * 111.17719 * 121.99982 * 12 11 10 14 14 N 1.46507 * 109.47083 * 61.01024 * 13 12 11 15 15 C 1.34778 * 119.99824 * 180.02562 * 14 13 12 16 16 O 1.21282 * 119.99889 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99941 * 179.97438 * 15 14 13 18 18 H 1.09006 * 110.50410 * 42.74487 * 17 15 14 19 19 C 1.54086 * 110.56948 * 280.00443 * 17 15 14 20 20 O 1.45698 * 104.00955 * 241.42699 * 19 17 15 21 21 C 1.33772 * 109.47560 * 359.97438 * 20 19 17 22 22 O 1.21513 * 123.06968 * 180.02562 * 21 20 19 23 23 N 1.33998 * 113.85903 * 359.97438 * 21 20 19 24 24 C 1.53524 * 109.98730 * 246.11060 * 12 11 10 25 25 C 1.54258 * 106.55298 * 117.58227 * 24 12 11 26 26 C 1.54734 * 104.14160 * 334.63581 * 25 24 12 27 27 C 1.47252 * 126.52165 * 180.02562 * 9 7 2 28 28 H 1.09000 * 112.71792 * 26.64142 * 27 9 7 29 29 H 0.96996 * 119.99458 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.08255 * 91.65546 * 10 9 7 31 31 H 1.09001 * 110.17776 * 330.02284 * 10 9 7 32 32 H 1.09002 * 110.23271 * 221.73737 * 11 10 9 33 33 H 1.09000 * 110.22834 * 99.86455 * 11 10 9 34 34 H 1.08999 * 109.47571 * 181.01153 * 13 12 11 35 35 H 1.09000 * 109.46746 * 301.01200 * 13 12 11 36 36 H 0.97000 * 119.99729 * 0.02562 * 14 13 12 37 37 H 1.09002 * 110.51863 * 0.05328 * 19 17 15 38 38 H 1.08998 * 110.52910 * 122.79163 * 19 17 15 39 39 H 0.96995 * 125.56541 * 180.02562 * 23 21 20 40 40 H 1.09005 * 110.03891 * 236.85631 * 24 12 11 41 41 H 1.09003 * 110.04031 * 358.30778 * 24 12 11 42 42 H 1.08995 * 110.49244 * 215.96455 * 25 24 12 43 43 H 1.09001 * 110.60671 * 93.35550 * 25 24 12 44 44 H 1.09002 * 110.65239 * 279.09758 * 26 25 24 45 45 H 1.09006 * 110.79012 * 156.07687 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1380 -2.5541 0.0013 11 6 -0.4207 -3.8637 0.7574 12 6 0.9023 -4.6454 0.7406 13 6 1.3775 -4.9582 2.1608 14 7 0.3770 -5.7858 2.8393 15 6 0.5829 -6.1861 4.1097 16 8 1.5962 -5.8608 4.6913 17 6 -0.4465 -7.0369 4.8079 18 1 -0.8196 -7.8116 4.1379 19 6 -1.6066 -6.1659 5.3273 20 8 -1.5749 -6.3604 6.7709 21 6 -0.5800 -7.1972 7.0864 22 8 -0.3314 -7.5312 8.2279 23 7 0.1168 -7.6341 6.0285 24 6 0.7466 -5.9225 -0.0972 25 6 1.7289 -5.7948 -1.2797 26 6 1.9118 -4.2684 -1.4562 27 6 1.9123 -3.7387 -0.0005 28 1 2.9043 -3.7667 0.4503 29 1 -0.4849 0.8401 0.0004 30 1 -0.5079 -2.6248 -1.0216 31 1 -0.6107 -1.7162 0.5138 32 1 -1.2004 -4.4314 0.2495 33 1 -0.7189 -3.6496 1.7837 34 1 2.3246 -5.4960 2.1169 35 1 1.5133 -4.0276 2.7117 36 1 -0.4336 -6.0457 2.3743 37 1 -1.4384 -5.1179 5.0792 38 1 -2.5560 -6.5092 4.9163 39 1 0.8701 -8.2442 6.0620 40 1 0.9974 -6.7965 0.5040 41 1 -0.2753 -6.0040 -0.4676 42 1 1.3010 -6.2347 -2.1805 43 1 2.6812 -6.2681 -1.0403 44 1 1.0805 -3.8442 -2.0194 45 1 2.8597 -4.0464 -1.9464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094407602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:24 Heat of formation + Delta-G solvation = -78.766376 kcal Electronic energy + Delta-G solvation = -28402.802491 eV Core-core repulsion = 24421.159331 eV Total energy + Delta-G solvation = -3981.643160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07991 -40.11105 -39.03527 -37.36939 -35.14105 -34.84263 -34.04581 -31.75529 -30.85336 -29.93937 -28.07252 -26.89818 -25.37418 -23.96935 -23.63635 -22.69519 -21.09879 -20.58260 -19.74295 -18.82500 -18.45381 -17.93209 -17.40811 -16.97184 -16.35755 -15.82115 -15.39656 -15.07761 -14.74711 -14.58474 -14.54409 -14.37812 -13.89232 -13.72007 -13.69424 -13.48777 -13.19319 -12.70114 -12.50699 -11.96426 -11.71894 -11.33162 -11.20521 -11.06950 -10.98980 -10.84883 -10.72947 -10.64446 -10.59619 -10.37136 -10.19327 -10.12321 -9.94801 -9.71551 -9.58645 -9.52043 -9.13149 -8.72565 -6.94819 -5.70116 -3.15295 2.15913 2.22057 2.45293 2.81817 3.27371 3.36836 3.41851 3.42212 3.66053 4.17624 4.22488 4.42444 4.65136 4.78911 4.84319 4.89170 4.96860 5.02593 5.41165 5.44318 5.49462 5.63951 5.78602 5.82728 5.94046 5.98459 5.99892 6.03831 6.19666 6.22227 6.33007 6.36858 6.40677 6.51139 6.57214 6.68408 6.79147 6.87580 6.98593 7.26267 7.41673 7.56380 7.76182 7.78625 7.92895 8.34172 9.15065 9.75996 10.41759 11.30211 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.003310 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.240445 B = 8456.281387 C = 9529.053605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.587 5.587 10 C 0.137 3.863 11 C -0.131 4.131 12 C -0.088 4.088 13 C 0.141 3.859 14 N -0.713 5.713 15 C 0.497 3.503 16 O -0.520 6.520 17 C 0.076 3.924 18 H 0.127 0.873 19 C 0.053 3.947 20 O -0.322 6.322 21 C 0.652 3.348 22 O -0.519 6.519 23 N -0.710 5.710 24 C -0.110 4.110 25 C -0.123 4.123 26 C -0.137 4.137 27 C 0.169 3.831 28 H 0.064 0.936 29 H 0.253 0.747 30 H 0.006 0.994 31 H 0.121 0.879 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.402 0.598 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.440 0.560 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 -16.792 1.474 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.308 5.308 10 C 0.011 3.989 11 C -0.170 4.170 12 C -0.090 4.090 13 C 0.019 3.981 14 N -0.365 5.365 15 C 0.279 3.721 16 O -0.395 6.395 17 C -0.035 4.035 18 H 0.145 0.855 19 C -0.022 4.022 20 O -0.232 6.232 21 C 0.404 3.596 22 O -0.404 6.404 23 N -0.382 5.382 24 C -0.148 4.148 25 C -0.161 4.161 26 C -0.177 4.177 27 C 0.060 3.940 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.138 0.862 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.236 0.764 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.284 0.716 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.983 -16.178 2.668 16.873 hybrid contribution 0.485 0.410 -0.693 0.940 sum -3.498 -15.768 1.975 16.271 Atomic orbital electron populations 1.69609 1.04897 1.24828 1.57612 1.24755 0.95678 0.97706 1.02332 0.86157 0.78450 0.83000 0.77935 1.21219 1.21567 1.21122 1.19057 0.90484 0.82364 1.43074 0.90475 1.44576 1.01737 0.99297 1.85186 1.21886 0.85200 0.95093 0.96673 1.22731 0.94301 0.99078 1.00855 1.22032 0.98477 0.95718 0.92753 1.21463 0.90092 0.94549 0.92031 1.46055 1.24280 1.53069 1.13062 1.20478 0.87807 0.81435 0.82373 1.90796 1.28121 1.55466 1.65112 1.22328 0.93872 0.97396 0.89879 0.85521 1.24304 0.98548 1.02356 0.77027 1.87308 1.49531 1.61271 1.25083 1.18422 0.78307 0.77500 0.85370 1.91092 1.69831 1.60680 1.18756 1.45642 1.37100 1.50596 1.04907 1.22231 0.99719 0.96275 0.96565 1.22274 0.98582 0.97832 0.97416 1.23063 1.01437 0.93278 0.99938 1.21650 0.94517 0.85625 0.92240 0.91774 0.93628 0.97577 0.86171 0.92701 0.92652 0.91631 0.90530 0.76382 0.86824 0.86030 0.71615 0.92527 0.91766 0.92566 0.92380 0.91228 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.49 10.06 55.49 0.56 -24.94 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.22 -5.80 10.33 -15.06 -0.16 -5.96 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.59 -13.57 2.98 -161.85 -0.48 -14.05 16 10 C 0.14 2.98 5.68 -3.17 -0.02 2.96 16 11 C -0.13 -2.05 5.73 -25.94 -0.15 -2.20 16 12 C -0.09 -1.24 0.66 -153.03 -0.10 -1.34 16 13 C 0.14 1.91 4.29 -4.04 -0.02 1.89 16 14 N -0.71 -6.89 4.86 -60.29 -0.29 -7.19 16 15 C 0.50 5.27 6.96 -10.99 -0.08 5.20 16 16 O -0.52 -8.15 16.56 5.56 0.09 -8.06 16 17 C 0.08 0.52 4.17 -68.19 -0.28 0.24 16 18 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 19 C 0.05 0.35 7.87 37.72 0.30 0.65 16 20 O -0.32 -3.68 11.09 -37.83 -0.42 -4.10 16 21 C 0.65 8.39 9.16 53.71 0.49 8.89 16 22 O -0.52 -8.72 18.04 -19.12 -0.34 -9.07 16 23 N -0.71 -6.66 5.63 -59.36 -0.33 -6.99 16 24 C -0.11 -1.25 5.68 -25.80 -0.15 -1.40 16 25 C -0.12 -1.53 6.84 -25.16 -0.17 -1.71 16 26 C -0.14 -2.25 6.37 -24.82 -0.16 -2.41 16 27 C 0.17 3.08 3.59 -65.65 -0.24 2.85 16 28 H 0.06 1.19 7.95 -51.93 -0.41 0.78 16 29 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.01 0.15 7.72 -51.93 -0.40 -0.26 16 31 H 0.12 3.05 5.46 -51.93 -0.28 2.77 16 32 H 0.05 0.73 7.07 -51.93 -0.37 0.36 16 33 H 0.05 0.85 7.57 -51.93 -0.39 0.46 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.40 2.71 7.86 -40.82 -0.32 2.39 16 37 H 0.11 0.79 7.72 -51.93 -0.40 0.39 16 38 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.44 3.57 8.96 -40.82 -0.37 3.20 16 40 H 0.06 0.54 7.56 -51.93 -0.39 0.15 16 41 H 0.06 0.68 7.06 -51.93 -0.37 0.31 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.29 7.29 -51.93 -0.38 0.91 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -34.26 358.28 -8.26 -42.52 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.59 Total: 2.76 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -0.82 Total: 7.31 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.55 Total: -53.17 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.67 Total: -21.23 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.26 -8.26 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094407602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.249 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds