Wall clock time and date at job start Fri Apr 10 2020 18:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47320 * 240.00760 * 3 2 1 5 5 H 1.48503 * 109.46920 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47125 * 119.99948 * 3 2 1 7 7 C 1.38811 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00332 * 359.97438 * 7 2 1 10 10 C 1.47293 * 126.46862 * 359.93594 * 9 7 2 11 11 C 1.53842 * 106.21045 * 210.81233 * 10 9 7 12 12 C 1.53674 * 105.62921 * 340.80481 * 11 10 9 13 13 C 1.52995 * 111.17719 * 121.99982 * 12 11 10 14 14 N 1.46507 * 109.47083 * 61.01024 * 13 12 11 15 15 C 1.34778 * 119.99824 * 180.02562 * 14 13 12 16 16 O 1.21282 * 119.99889 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99941 * 179.97438 * 15 14 13 18 18 H 1.09006 * 110.50410 * 42.74487 * 17 15 14 19 19 C 1.54086 * 110.56948 * 280.00443 * 17 15 14 20 20 O 1.45698 * 104.00955 * 241.42699 * 19 17 15 21 21 C 1.33772 * 109.47560 * 359.97438 * 20 19 17 22 22 O 1.21513 * 123.06968 * 180.02562 * 21 20 19 23 23 N 1.33998 * 113.85903 * 359.97438 * 21 20 19 24 24 C 1.53524 * 109.98730 * 246.11060 * 12 11 10 25 25 C 1.54258 * 106.55298 * 117.58227 * 24 12 11 26 26 C 1.54734 * 104.14160 * 334.63581 * 25 24 12 27 27 C 1.47252 * 126.52165 * 180.02562 * 9 7 2 28 28 H 1.09000 * 112.71792 * 26.64142 * 27 9 7 29 29 H 0.96996 * 119.99458 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.08255 * 91.65546 * 10 9 7 31 31 H 1.09001 * 110.17776 * 330.02284 * 10 9 7 32 32 H 1.09002 * 110.23271 * 221.73737 * 11 10 9 33 33 H 1.09000 * 110.22834 * 99.86455 * 11 10 9 34 34 H 1.08999 * 109.47571 * 181.01153 * 13 12 11 35 35 H 1.09000 * 109.46746 * 301.01200 * 13 12 11 36 36 H 0.97000 * 119.99729 * 0.02562 * 14 13 12 37 37 H 1.09002 * 110.51863 * 0.05328 * 19 17 15 38 38 H 1.08998 * 110.52910 * 122.79163 * 19 17 15 39 39 H 0.96995 * 125.56541 * 180.02562 * 23 21 20 40 40 H 1.09005 * 110.03891 * 236.85631 * 24 12 11 41 41 H 1.09003 * 110.04031 * 358.30778 * 24 12 11 42 42 H 1.08995 * 110.49244 * 215.96455 * 25 24 12 43 43 H 1.09001 * 110.60671 * 93.35550 * 25 24 12 44 44 H 1.09002 * 110.65239 * 279.09758 * 26 25 24 45 45 H 1.09006 * 110.79012 * 156.07687 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1380 -2.5541 0.0013 11 6 -0.4207 -3.8637 0.7574 12 6 0.9023 -4.6454 0.7406 13 6 1.3775 -4.9582 2.1608 14 7 0.3770 -5.7858 2.8393 15 6 0.5829 -6.1861 4.1097 16 8 1.5962 -5.8608 4.6913 17 6 -0.4465 -7.0369 4.8079 18 1 -0.8196 -7.8116 4.1379 19 6 -1.6066 -6.1659 5.3273 20 8 -1.5749 -6.3604 6.7709 21 6 -0.5800 -7.1972 7.0864 22 8 -0.3314 -7.5312 8.2279 23 7 0.1168 -7.6341 6.0285 24 6 0.7466 -5.9225 -0.0972 25 6 1.7289 -5.7948 -1.2797 26 6 1.9118 -4.2684 -1.4562 27 6 1.9123 -3.7387 -0.0005 28 1 2.9043 -3.7667 0.4503 29 1 -0.4849 0.8401 0.0004 30 1 -0.5079 -2.6248 -1.0216 31 1 -0.6107 -1.7162 0.5138 32 1 -1.2004 -4.4314 0.2495 33 1 -0.7189 -3.6496 1.7837 34 1 2.3246 -5.4960 2.1169 35 1 1.5133 -4.0276 2.7117 36 1 -0.4336 -6.0457 2.3743 37 1 -1.4384 -5.1179 5.0792 38 1 -2.5560 -6.5092 4.9163 39 1 0.8701 -8.2442 6.0620 40 1 0.9974 -6.7965 0.5040 41 1 -0.2753 -6.0040 -0.4676 42 1 1.3010 -6.2347 -2.1805 43 1 2.6812 -6.2681 -1.0403 44 1 1.0805 -3.8442 -2.0194 45 1 2.8597 -4.0464 -1.9464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094407602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:23 Heat of formation + Delta-G solvation = -106.032462 kcal Electronic energy + Delta-G solvation = -28403.984838 eV Core-core repulsion = 24421.159331 eV Total energy + Delta-G solvation = -3982.825506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.87779 -41.27241 -40.14116 -38.36116 -36.35520 -35.74542 -35.40087 -33.32178 -32.16942 -30.96465 -29.28820 -28.41523 -26.27800 -25.55546 -24.72980 -23.54310 -22.17285 -21.93418 -21.03450 -19.88969 -19.29602 -19.03828 -18.73283 -18.10937 -17.25026 -16.96384 -16.74432 -16.37472 -15.92626 -15.67232 -15.48685 -15.27663 -15.18016 -15.07488 -14.70612 -14.49989 -14.29283 -14.05182 -13.58264 -13.40108 -13.26547 -12.82022 -12.79918 -12.50248 -12.14053 -12.04888 -12.00646 -11.95672 -11.79199 -11.59726 -11.55462 -11.53797 -11.34556 -11.26278 -11.01140 -10.67371 -10.35984 -10.12777 -8.83473 -7.71890 -5.17526 1.33302 1.38593 1.45702 1.47216 1.53196 1.63489 2.00714 2.49858 2.59601 3.09100 3.31648 3.41737 3.60318 3.75325 3.78528 3.82481 4.00370 4.09346 4.35920 4.43633 4.45442 4.50181 4.52600 4.59722 4.68812 4.69917 4.83356 4.95779 5.00332 5.11165 5.18685 5.22911 5.30682 5.37763 5.49010 5.51708 5.55569 5.63535 5.65834 5.75105 5.93471 6.07191 6.43863 6.47755 6.89882 7.14946 7.16148 7.84738 8.49746 9.25119 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.003310 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.240445 B = 8456.281387 C = 9529.053605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.064 4.064 3 Si 0.970 3.030 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.230 4.230 8 H 0.074 0.926 9 N -0.610 5.610 10 C 0.137 3.863 11 C -0.116 4.116 12 C -0.072 4.072 13 C 0.153 3.847 14 N -0.694 5.694 15 C 0.498 3.502 16 O -0.577 6.577 17 C 0.087 3.913 18 H 0.189 0.811 19 C 0.047 3.953 20 O -0.341 6.341 21 C 0.647 3.353 22 O -0.572 6.572 23 N -0.700 5.700 24 C -0.101 4.101 25 C -0.113 4.113 26 C -0.134 4.134 27 C 0.153 3.847 28 H 0.053 0.947 29 H 0.245 0.755 30 H -0.018 1.018 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.422 0.578 37 H 0.108 0.892 38 H 0.175 0.825 39 H 0.445 0.555 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 -20.004 0.495 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.799 3.201 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.360 4.360 8 H 0.092 0.908 9 N -0.332 5.332 10 C 0.012 3.988 11 C -0.155 4.155 12 C -0.073 4.073 13 C 0.029 3.971 14 N -0.347 5.347 15 C 0.282 3.718 16 O -0.455 6.455 17 C -0.022 4.022 18 H 0.206 0.794 19 C -0.027 4.027 20 O -0.250 6.250 21 C 0.400 3.600 22 O -0.461 6.461 23 N -0.372 5.372 24 C -0.138 4.138 25 C -0.151 4.151 26 C -0.174 4.174 27 C 0.045 3.955 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.000 1.000 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.261 0.739 37 H 0.126 0.874 38 H 0.192 0.808 39 H 0.290 0.710 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.207 -19.437 1.623 20.188 hybrid contribution 0.917 1.477 -0.482 1.804 sum -4.289 -17.960 1.141 18.501 Atomic orbital electron populations 1.69884 1.05840 1.24638 1.59022 1.25451 0.96511 1.00399 1.03281 0.85275 0.77255 0.79658 0.77904 1.20730 1.21960 1.20881 1.19363 0.90758 0.84080 1.41786 0.90808 1.44806 1.02650 1.00331 1.85369 1.21678 0.84352 0.97152 0.95633 1.22590 0.96090 0.96343 1.00436 1.21849 0.95950 0.96330 0.93211 1.21064 0.91335 0.93431 0.91257 1.45758 1.24168 1.51889 1.12890 1.21157 0.87705 0.80820 0.82085 1.90792 1.30861 1.57560 1.66326 1.22647 0.92129 0.98112 0.89318 0.79376 1.24806 1.00822 1.02472 0.74606 1.87275 1.48901 1.60746 1.28107 1.18595 0.78642 0.77428 0.85301 1.91039 1.71400 1.62626 1.21007 1.45652 1.36694 1.49764 1.05078 1.22225 1.00714 0.95153 0.95707 1.22245 0.99927 0.94034 0.98923 1.22912 0.99905 0.96771 0.97847 1.21979 0.95079 0.84311 0.94160 0.92930 0.94489 0.99979 0.90046 0.88989 0.92258 0.91547 0.94792 0.73925 0.87429 0.80801 0.71017 0.89321 0.89616 0.90605 0.91071 0.93722 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.48 10.06 21.65 0.22 -54.27 16 2 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 3 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.23 -12.55 10.33 84.03 0.87 -11.69 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.61 -29.10 2.98 -665.96 -1.99 -31.08 16 10 C 0.14 6.11 5.68 86.51 0.49 6.61 16 11 C -0.12 -3.38 5.73 31.11 0.18 -3.21 16 12 C -0.07 -1.85 0.66 -51.22 -0.03 -1.88 16 13 C 0.15 3.85 4.29 86.38 0.37 4.22 16 14 N -0.69 -10.70 4.86 -463.06 -2.25 -12.95 16 15 C 0.50 9.04 6.96 87.66 0.61 9.65 16 16 O -0.58 -17.52 16.56 -3.04 -0.05 -17.57 16 17 C 0.09 0.81 4.17 44.50 0.19 1.00 16 18 H 0.19 -0.39 8.14 -2.38 -0.02 -0.41 16 19 C 0.05 0.44 7.87 72.35 0.57 1.01 16 20 O -0.34 -7.18 11.09 -47.32 -0.52 -7.70 16 21 C 0.65 16.05 9.16 129.91 1.19 17.24 16 22 O -0.57 -19.55 18.04 19.64 0.35 -19.20 16 23 N -0.70 -11.47 5.63 -573.43 -3.23 -14.70 16 24 C -0.10 -1.75 5.68 31.20 0.18 -1.57 16 25 C -0.11 -2.38 6.84 31.61 0.22 -2.16 16 26 C -0.13 -4.31 6.37 31.84 0.20 -4.11 16 27 C 0.15 5.54 3.59 46.06 0.17 5.71 16 28 H 0.05 2.00 7.95 -2.39 -0.02 1.98 16 29 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 30 H -0.02 -0.85 7.72 -2.39 -0.02 -0.87 16 31 H 0.08 4.31 5.46 -2.39 -0.01 4.30 16 32 H 0.09 2.04 7.07 -2.39 -0.02 2.02 16 33 H 0.06 1.69 7.57 -2.39 -0.02 1.67 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.42 3.14 7.86 -92.71 -0.73 2.41 16 37 H 0.11 1.17 7.72 -2.39 -0.02 1.15 16 38 H 0.17 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.45 6.35 8.96 -92.71 -0.83 5.51 16 40 H 0.09 1.09 7.56 -2.38 -0.02 1.07 16 41 H 0.09 1.23 7.06 -2.39 -0.02 1.21 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.04 1.65 7.29 -2.39 -0.02 1.63 16 45 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -83.95 358.28 -0.31 -84.26 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -0.52 Total: 8.00 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 5.66 Total: 17.72 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -7.25 Total: -113.00 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.22 Total: -44.47 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -83.95 -0.31 -84.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094407602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.776 kcal (2) G-P(sol) polarization free energy of solvation -83.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds