Wall clock time and date at job start Fri Apr 10 2020 18:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00042 * 2 1 4 4 H 1.48504 * 109.47076 * 239.99687 * 3 2 1 5 5 H 1.48503 * 109.47107 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47337 * 119.99701 * 3 2 1 7 7 C 1.38813 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99736 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.47579 * 134.48943 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11634 * 155.35556 * 10 9 7 12 12 N 1.46497 * 113.74022 * 137.94994 * 11 10 9 13 13 C 1.46765 * 124.35203 * 121.92727 * 12 11 10 14 14 C 1.54476 * 105.47621 * 197.03707 * 13 12 11 15 15 H 1.09005 * 110.99619 * 216.45187 * 14 13 12 16 16 N 1.46494 * 110.97045 * 92.70067 * 14 13 12 17 17 C 1.34775 * 120.00058 * 161.16522 * 16 14 13 18 18 O 1.21286 * 119.99753 * 0.02562 * 17 16 14 19 19 C 1.50703 * 120.00069 * 180.02562 * 17 16 14 20 20 H 1.09002 * 109.89709 * 55.52628 * 19 17 16 21 21 C 1.54380 * 109.82989 * 294.58825 * 19 17 16 22 22 C 1.55312 * 102.25056 * 219.13000 * 21 19 17 23 23 C 1.54951 * 100.94225 * 34.13333 * 22 21 19 24 24 O 1.43245 * 109.82902 * 176.45427 * 19 17 16 25 25 C 1.54626 * 101.76369 * 334.58020 * 14 13 12 26 26 C 1.34423 * 124.35170 * 301.94730 * 12 11 10 27 27 O 1.21280 * 124.94261 * 359.61093 * 26 12 11 28 28 C 1.47811 * 134.45614 * 359.86071 * 9 7 2 29 29 H 0.96994 * 119.99269 * 0.02562 * 1 2 3 30 30 H 1.08998 * 113.77502 * 41.05170 * 10 9 7 31 31 H 1.09003 * 113.76822 * 269.65872 * 10 9 7 32 32 H 1.09000 * 113.74076 * 269.15315 * 11 10 9 33 33 H 1.09001 * 110.24386 * 78.03396 * 13 12 11 34 34 H 1.08996 * 110.24130 * 316.04138 * 13 12 11 35 35 H 0.96999 * 120.00504 * 341.17332 * 16 14 13 36 36 H 1.08999 * 110.84912 * 337.32025 * 21 19 17 37 37 H 1.08999 * 110.84558 * 100.93988 * 21 19 17 38 38 H 1.09000 * 111.12606 * 276.21364 * 22 21 19 39 39 H 1.09000 * 111.15931 * 152.06685 * 22 21 19 40 40 H 1.08996 * 110.30651 * 204.63910 * 23 22 21 41 41 H 1.08995 * 110.30511 * 82.46801 * 23 22 21 42 42 H 1.09006 * 110.48415 * 143.48122 * 25 14 13 43 43 H 1.09002 * 110.48766 * 266.11862 * 25 14 13 44 44 H 1.09005 * 113.76897 * 90.38624 * 28 9 7 45 45 H 1.08990 * 113.83681 * 318.92108 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8101 0.0005 11 6 0.3471 -4.0829 0.6410 12 7 -0.3333 -5.2613 0.0981 13 6 -0.7617 -6.4132 0.9004 14 6 -1.0128 -7.5512 -0.1135 15 1 -1.8632 -8.1627 0.1883 16 7 0.1868 -8.3744 -0.2854 17 6 0.0856 -9.6113 -0.8110 18 8 -0.9985 -10.0427 -1.1421 19 6 1.3195 -10.4584 -0.9872 20 1 1.8387 -10.5605 -0.0342 21 6 2.2569 -9.8082 -2.0273 22 6 2.7883 -11.0410 -2.8084 23 6 1.5478 -11.9689 -2.7725 24 8 0.9543 -11.7519 -1.4826 25 6 -1.3303 -6.7598 -1.4034 26 6 -0.6451 -5.4267 -1.1989 27 8 -0.4106 -4.6242 -2.0775 28 6 -0.1058 -2.7570 0.0026 29 1 -0.4849 0.8401 -0.0004 30 1 2.5625 -4.0324 0.6556 31 1 1.8319 -4.2351 -0.9970 32 1 0.3596 -4.0639 1.7308 33 1 -1.6801 -6.1776 1.4382 34 1 0.0237 -6.6981 1.6005 35 1 1.0539 -8.0294 -0.0208 36 1 1.7016 -9.1411 -2.6867 37 1 3.0734 -9.2787 -1.5362 38 1 3.6347 -11.4967 -2.2945 39 1 3.0504 -10.7750 -3.8324 40 1 1.8512 -13.0103 -2.8790 41 1 0.8478 -11.6952 -3.5619 42 1 -0.9198 -7.2701 -2.2748 43 1 -2.4063 -6.6231 -1.5120 44 1 -0.5312 -2.8722 -0.9943 45 1 -0.7187 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094702245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:32 Heat of formation + Delta-G solvation = -71.096647 kcal Electronic energy + Delta-G solvation = -27967.793681 eV Core-core repulsion = 23986.483105 eV Total energy + Delta-G solvation = -3981.310576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.00458 -41.14523 -39.48938 -38.80890 -37.55629 -35.17609 -34.18109 -33.12558 -31.96570 -30.44114 -29.16576 -28.30560 -26.59958 -25.32922 -24.76470 -22.71497 -22.59505 -22.09372 -21.40146 -19.72152 -18.80014 -18.70098 -18.09634 -17.73547 -17.38556 -16.88987 -16.79488 -16.37616 -16.05736 -15.78447 -15.61001 -15.24973 -14.98434 -14.62282 -14.52016 -14.26050 -14.15581 -13.99875 -13.41328 -13.40536 -13.18356 -12.95969 -12.85672 -12.76368 -12.70885 -12.66567 -12.47858 -12.18725 -12.01026 -11.92709 -11.90865 -11.51171 -11.26603 -11.05419 -10.64234 -10.36388 -10.14226 -9.55681 -8.93509 -7.92302 -5.26765 1.43002 1.47911 1.51805 1.53969 1.61710 1.91314 2.00641 2.48795 2.93121 3.25642 3.33473 3.43980 3.45626 3.48035 3.68762 3.80444 3.85914 3.87911 4.13701 4.18447 4.22809 4.27268 4.40948 4.53445 4.61621 4.68249 4.75633 4.77235 4.79628 4.80468 4.86821 4.91058 4.94709 4.96116 5.18294 5.22354 5.23579 5.40715 5.48614 5.86221 5.87207 5.90309 6.26606 6.48723 6.88259 7.18556 7.25166 7.58127 8.53503 9.24779 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.002685 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.177433 B =10427.269285 C =11041.349832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.984 3.016 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.237 4.237 8 H 0.087 0.913 9 N -0.635 5.635 10 C 0.116 3.884 11 C 0.138 3.862 12 N -0.605 5.605 13 C 0.098 3.902 14 C 0.146 3.854 15 H 0.128 0.872 16 N -0.707 5.707 17 C 0.503 3.497 18 O -0.568 6.568 19 C 0.063 3.937 20 H 0.137 0.863 21 C -0.146 4.146 22 C -0.147 4.147 23 C 0.038 3.962 24 O -0.383 6.383 25 C -0.156 4.156 26 C 0.503 3.497 27 O -0.575 6.575 28 C 0.146 3.854 29 H 0.248 0.752 30 H 0.073 0.927 31 H 0.023 0.977 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.416 0.584 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.124 0.876 44 H 0.020 0.980 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 -25.883 2.815 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.811 3.189 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.365 4.365 8 H 0.105 0.895 9 N -0.362 5.362 10 C -0.010 4.010 11 C 0.034 3.966 12 N -0.338 5.338 13 C -0.024 4.024 14 C 0.040 3.960 15 H 0.146 0.854 16 N -0.361 5.361 17 C 0.290 3.710 18 O -0.446 6.446 19 C 0.003 3.997 20 H 0.155 0.845 21 C -0.184 4.184 22 C -0.184 4.184 23 C -0.037 4.037 24 O -0.301 6.301 25 C -0.197 4.197 26 C 0.292 3.708 27 O -0.454 6.454 28 C 0.019 3.981 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.037 0.963 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.480 -25.554 2.289 25.891 hybrid contribution 0.414 1.733 -0.729 1.925 sum 3.895 -23.821 1.560 24.187 Atomic orbital electron populations 1.70044 1.06683 1.25705 1.57936 1.25740 0.96600 1.01234 1.02773 0.85077 0.77086 0.78295 0.78405 1.20744 1.22089 1.19272 1.19410 0.90885 0.83168 1.43041 0.89509 1.46136 1.03511 1.00711 1.85856 1.22995 0.96696 0.83913 0.97429 1.23374 0.91668 0.82407 0.99142 1.48467 1.57708 1.19422 1.08191 1.22680 1.03879 0.82450 0.93395 1.21805 0.89919 0.91194 0.93042 0.85422 1.45930 1.11225 1.14776 1.64200 1.21529 0.91493 0.81937 0.76084 1.90708 1.30524 1.72994 1.50327 1.22873 0.91544 0.83698 1.01632 0.84539 1.23178 0.99242 0.98877 0.97100 1.23288 0.98114 0.94402 1.02615 1.23651 0.93902 1.01753 0.84442 1.88486 1.74761 1.31854 1.35012 1.22765 1.03384 0.92609 1.00938 1.21460 0.78091 0.88787 0.82454 1.90759 1.56702 1.50372 1.47597 1.22596 0.87401 0.90905 0.97148 0.94310 0.90929 0.95887 0.84395 0.87135 0.86378 0.74670 0.91497 0.86227 0.88114 0.88513 0.87633 0.93233 0.89036 0.85822 0.96251 0.94198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.25 11.39 21.65 0.25 -60.01 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 3 Si 0.98 46.90 29.55 68.60 2.03 48.92 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.24 -13.75 10.70 84.03 0.90 -12.85 16 8 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 9 N -0.64 -34.06 3.70 -716.66 -2.65 -36.71 16 10 C 0.12 4.69 8.44 86.49 0.73 5.42 16 11 C 0.14 4.81 4.81 46.76 0.22 5.04 16 12 N -0.60 -16.27 3.16 -799.68 -2.52 -18.80 16 13 C 0.10 1.40 6.96 86.83 0.60 2.01 16 14 C 0.15 2.27 3.43 46.05 0.16 2.42 16 15 H 0.13 1.83 7.73 -2.38 -0.02 1.81 16 16 N -0.71 -9.88 5.14 -437.54 -2.25 -12.13 16 17 C 0.50 9.59 7.03 87.66 0.62 10.21 16 18 O -0.57 -16.19 16.27 15.74 0.26 -15.93 16 19 C 0.06 0.90 3.95 30.32 0.12 1.02 16 20 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 21 C -0.15 -1.53 6.52 31.86 0.21 -1.32 16 22 C -0.15 -1.30 7.16 32.06 0.23 -1.07 16 23 C 0.04 0.54 7.78 72.65 0.57 1.10 16 24 O -0.38 -7.65 10.56 -130.19 -1.38 -9.03 16 25 C -0.16 -3.52 6.58 30.59 0.20 -3.32 16 26 C 0.50 16.42 7.42 87.90 0.65 17.07 16 27 O -0.57 -26.38 14.61 -3.03 -0.04 -26.42 16 28 C 0.15 7.40 6.90 86.45 0.60 7.99 16 29 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.02 1.02 7.25 -2.39 -0.02 1.01 16 32 H 0.14 4.02 8.14 -2.39 -0.02 4.00 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.12 1.03 8.03 -2.39 -0.02 1.01 16 35 H 0.42 3.90 8.57 -92.71 -0.79 3.11 16 36 H 0.07 0.95 7.84 -2.39 -0.02 0.93 16 37 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 2.26 8.09 -2.38 -0.02 2.24 16 43 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.02 1.14 5.72 -2.38 -0.01 1.12 16 45 H 0.04 2.23 7.16 -2.39 -0.02 2.21 16 Total: -1.00 -89.67 366.81 0.17 -89.50 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.21 Total: 10.59 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 6.27 Total: 30.02 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -7.18 Total: -127.65 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -1.16 Total: -51.38 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -89.67 0.17 -89.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094702245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.401 kcal (2) G-P(sol) polarization free energy of solvation -89.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds