Wall clock time and date at job start Fri Apr 10 2020 18:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99718 * 2 1 4 4 H 1.48503 * 109.47052 * 240.00114 * 3 2 1 5 5 H 1.48496 * 109.47455 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47127 * 120.00222 * 3 2 1 7 7 C 1.38807 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00392 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.50239 * 130.83425 * 359.97266 * 9 7 2 11 11 H 1.09000 * 115.85957 * 0.36231 * 10 9 7 12 12 C 1.55838 * 101.05051 * 233.96927 * 10 9 7 13 13 C 1.54859 * 103.44679 * 327.06238 * 12 10 9 14 14 C 1.50238 * 130.84191 * 179.97438 * 9 7 2 15 15 H 1.09002 * 115.85614 * 359.65080 * 14 9 7 16 16 C 1.55838 * 101.05281 * 233.96700 * 14 9 7 17 17 H 1.09006 * 110.76348 * 85.61756 * 16 14 9 18 18 N 1.46499 * 110.62976 * 208.57446 * 16 14 9 19 19 C 1.34777 * 119.99976 * 270.02838 * 18 16 14 20 20 O 1.21292 * 119.99670 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00292 * 180.27119 * 19 18 16 22 22 H 1.09000 * 109.86647 * 304.02706 * 21 19 18 23 23 C 1.54104 * 109.87392 * 65.02791 * 21 19 18 24 24 C 1.54814 * 104.18378 * 121.45591 * 23 21 19 25 25 C 1.54998 * 102.09452 * 20.87990 * 24 23 21 26 26 H 1.08998 * 110.61823 * 81.63364 * 25 24 23 27 27 C 1.50697 * 110.62028 * 204.47397 * 25 24 23 28 28 N 1.34770 * 119.99755 * 295.00132 * 27 25 24 29 29 O 1.21280 * 119.99694 * 114.99473 * 27 25 24 30 30 O 1.43743 * 109.87881 * 183.01671 * 21 19 18 31 31 C 1.54856 * 103.44857 * 327.06380 * 16 14 9 32 32 H 0.97002 * 120.00437 * 359.97438 * 1 2 3 33 33 H 1.08999 * 110.62697 * 85.55190 * 12 10 9 34 34 H 1.09008 * 110.62650 * 208.57666 * 12 10 9 35 35 H 1.08990 * 110.62381 * 241.51179 * 13 12 10 36 36 H 1.08998 * 110.75682 * 118.55446 * 13 12 10 37 37 H 0.97001 * 120.00182 * 90.02276 * 18 16 14 38 38 H 1.09000 * 110.48543 * 240.12836 * 23 21 19 39 39 H 1.08997 * 110.49080 * 2.78411 * 23 21 19 40 40 H 1.09000 * 110.90698 * 139.07503 * 24 23 21 41 41 H 1.08996 * 110.90583 * 262.64452 * 24 23 21 42 42 H 0.96994 * 120.00505 * 359.97438 * 28 27 25 43 43 H 0.97004 * 119.99880 * 179.97438 * 28 27 25 44 44 H 1.08997 * 110.62776 * 118.48458 * 31 16 14 45 45 H 1.08998 * 110.62725 * 241.35185 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1499 -2.6706 0.0005 11 1 -0.8013 -1.7966 -0.0048 12 6 -0.2732 -3.6109 1.2371 13 6 1.0679 -4.3853 1.2357 14 6 1.8188 -3.8072 -0.0016 15 1 2.9014 -3.9343 -0.0084 16 6 1.0660 -4.3842 -1.2381 17 1 1.6218 -4.1879 -2.1550 18 7 0.8324 -5.8213 -1.0758 19 6 1.7471 -6.7069 -1.5179 20 8 2.7635 -6.3140 -2.0506 21 6 1.5040 -8.1854 -1.3565 22 1 1.3260 -8.4191 -0.3068 23 6 0.2879 -8.6117 -2.2017 24 6 0.8506 -9.6910 -3.1585 25 6 2.1334 -10.1455 -2.4168 26 1 1.8908 -10.8691 -1.6386 27 6 3.1298 -10.7261 -3.3870 28 7 2.8400 -11.8624 -4.0512 29 8 4.1923 -10.1707 -3.5700 30 8 2.6410 -8.9229 -1.8356 31 6 -0.2751 -3.6100 -1.2368 32 1 -0.4851 0.8400 0.0004 33 1 -0.3797 -3.0293 2.1527 34 1 -1.1123 -4.2962 1.1163 35 1 0.8939 -5.4543 1.1143 36 1 1.6277 -4.1899 2.1503 37 1 0.0194 -6.1355 -0.6500 38 1 -0.4897 -9.0340 -1.5653 39 1 -0.0992 -7.7645 -2.7677 40 1 0.1497 -10.5187 -3.2663 41 1 1.0940 -9.2607 -4.1299 42 1 1.9904 -12.3067 -3.9046 43 1 3.4812 -12.2360 -4.6759 44 1 -0.3831 -3.0275 -2.1517 45 1 -1.1141 -4.2955 -1.1182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096004657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:54 Heat of formation + Delta-G solvation = -63.405852 kcal Electronic energy + Delta-G solvation = -28253.015995 eV Core-core repulsion = 24272.038918 eV Total energy + Delta-G solvation = -3980.977078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.80929 -39.81896 -38.81321 -37.57433 -34.17175 -33.96196 -32.55318 -32.15707 -30.45530 -29.22409 -28.96462 -27.47493 -25.03438 -24.02280 -22.50463 -21.36525 -20.88957 -20.46291 -19.51944 -18.59791 -18.16875 -17.67338 -16.99802 -16.77793 -16.51698 -15.83167 -15.30501 -14.86982 -14.77648 -14.69838 -14.47703 -14.07350 -13.86230 -13.73066 -13.53106 -12.48862 -12.32196 -12.30733 -12.11254 -11.90540 -11.74486 -11.48600 -11.35809 -11.03024 -10.90327 -10.88295 -10.80636 -10.54790 -10.20693 -10.10237 -10.06556 -10.02149 -9.84016 -9.43476 -9.32924 -9.18224 -8.91467 -8.49226 -6.89863 -5.71141 -3.08925 2.27692 2.61390 2.84222 3.28999 3.43014 3.46439 3.48187 3.80443 4.03674 4.34320 4.42289 4.47710 4.60369 4.70024 4.78506 5.05855 5.16271 5.21680 5.24415 5.39834 5.45499 5.57353 5.60107 5.82123 5.86110 5.97292 6.07557 6.11703 6.26520 6.31383 6.34335 6.45117 6.54289 6.60687 6.69184 6.83251 6.92601 6.97831 7.01255 7.28224 7.54358 7.74890 7.85138 7.92745 8.18371 8.52253 9.12434 9.74840 10.55005 11.38528 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027244 B = 0.002753 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.499168 B =10167.591374 C =10654.275916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.154 3.846 11 H 0.155 0.845 12 C -0.136 4.136 13 C -0.130 4.130 14 C 0.127 3.873 15 H 0.085 0.915 16 C 0.128 3.872 17 H 0.084 0.916 18 N -0.710 5.710 19 C 0.506 3.494 20 O -0.515 6.515 21 C 0.056 3.944 22 H 0.098 0.902 23 C -0.145 4.145 24 C -0.142 4.142 25 C 0.054 3.946 26 H 0.101 0.899 27 C 0.521 3.479 28 N -0.854 5.854 29 O -0.511 6.511 30 O -0.315 6.315 31 C -0.141 4.141 32 H 0.254 0.746 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.394 0.606 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.400 0.600 43 H 0.405 0.595 44 H 0.065 0.935 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 -25.024 -3.785 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.337 4.337 8 H 0.097 0.903 9 N -0.310 5.310 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.176 4.176 13 C -0.169 4.169 14 C 0.018 3.982 15 H 0.103 0.897 16 C 0.022 3.978 17 H 0.102 0.898 18 N -0.363 5.363 19 C 0.289 3.711 20 O -0.389 6.389 21 C -0.005 4.005 22 H 0.116 0.884 23 C -0.183 4.183 24 C -0.180 4.180 25 C -0.008 4.008 26 H 0.118 0.882 27 C 0.304 3.696 28 N -0.421 5.421 29 O -0.384 6.384 30 O -0.231 6.231 31 C -0.181 4.181 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.228 0.772 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.229 0.771 43 H 0.237 0.763 44 H 0.084 0.916 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.951 -23.759 -4.150 24.622 hybrid contribution -0.294 0.066 0.088 0.313 sum -5.244 -23.694 -4.062 24.605 Atomic orbital electron populations 1.69420 1.04984 1.25072 1.57862 1.24687 0.95654 0.97496 1.02910 0.86098 0.78369 0.82811 0.77934 1.21193 1.21598 1.21257 1.19035 0.90394 0.81875 1.42444 0.90338 1.46475 1.01583 0.98818 1.84132 1.23767 0.87739 0.95168 0.88604 0.82859 1.23041 0.95048 0.98163 1.01311 1.22896 0.97611 0.97465 0.98961 1.23209 0.96299 0.86107 0.92590 0.89653 1.22669 0.98142 0.76507 1.00435 0.89815 1.46154 1.22168 1.07114 1.60893 1.20254 0.84222 0.87276 0.79331 1.90768 1.26555 1.79906 1.41711 1.22751 0.86795 0.91371 0.99613 0.88436 1.22954 0.97240 0.99930 0.98193 1.23111 0.95428 0.99330 1.00081 1.23064 0.92468 0.90098 0.95154 0.88178 1.20178 0.87630 0.80640 0.81200 1.43718 1.23372 1.27460 1.47519 1.90840 1.24612 1.59291 1.63612 1.89229 1.26511 1.29800 1.77609 1.23304 0.93916 0.98421 1.02409 0.93540 0.92645 0.93662 0.93154 0.93022 0.77163 0.88976 0.89162 0.88906 0.89591 0.77138 0.76320 0.91650 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.26 10.46 55.49 0.58 -25.68 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.92 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.21 -5.85 10.59 -15.06 -0.16 -6.01 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.59 -14.80 2.99 -145.82 -0.44 -15.24 16 10 C 0.15 3.43 4.72 -62.80 -0.30 3.13 16 11 H 0.15 3.91 5.52 -51.93 -0.29 3.63 16 12 C -0.14 -2.57 6.44 -24.24 -0.16 -2.72 16 13 C -0.13 -2.37 6.32 -24.23 -0.15 -2.53 16 14 C 0.13 2.71 5.35 -62.81 -0.34 2.37 16 15 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 16 C 0.13 2.41 3.14 -65.44 -0.21 2.21 16 17 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16 18 N -0.71 -10.25 3.68 -51.39 -0.19 -10.44 16 19 C 0.51 8.05 6.95 -10.98 -0.08 7.97 16 20 O -0.52 -11.16 16.19 -14.02 -0.23 -11.39 16 21 C 0.06 0.64 3.84 -27.31 -0.10 0.54 16 22 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 23 C -0.15 -1.05 6.61 -25.20 -0.17 -1.21 16 24 C -0.14 -0.92 6.57 -24.72 -0.16 -1.08 16 25 C 0.05 0.48 3.76 -26.83 -0.10 0.38 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 27 C 0.52 5.55 7.48 -10.99 -0.08 5.47 16 28 N -0.85 -4.35 8.86 31.22 0.28 -4.08 16 29 O -0.51 -8.64 17.40 -13.47 -0.23 -8.88 16 30 O -0.31 -4.56 10.04 -64.29 -0.65 -5.20 16 31 C -0.14 -2.62 6.20 -24.23 -0.15 -2.77 16 32 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.04 0.70 7.82 -51.92 -0.41 0.30 16 35 H 0.05 0.77 6.39 -51.93 -0.33 0.44 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.39 4.36 7.92 -40.82 -0.32 4.04 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.73 7.69 -51.93 -0.40 0.33 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 42 H 0.40 0.53 8.83 -40.82 -0.36 0.17 16 43 H 0.41 1.78 8.93 -40.82 -0.36 1.42 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.05 0.82 7.39 -51.93 -0.38 0.44 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -38.38 361.35 -9.29 -47.67 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.60 Total: 5.23 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -2.25 Total: 5.30 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.23 Total: -55.43 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.11 Total: -25.47 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.38 -9.29 -47.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096004657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.734 kcal (2) G-P(sol) polarization free energy of solvation -38.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds