Wall clock time and date at job start Fri Apr 10 2020 18:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99718 * 2 1 4 4 H 1.48503 * 109.47052 * 240.00114 * 3 2 1 5 5 H 1.48496 * 109.47455 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47127 * 120.00222 * 3 2 1 7 7 C 1.38807 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00392 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.50239 * 130.83425 * 359.97266 * 9 7 2 11 11 H 1.09000 * 115.85957 * 0.36231 * 10 9 7 12 12 C 1.55838 * 101.05051 * 233.96927 * 10 9 7 13 13 C 1.54859 * 103.44679 * 327.06238 * 12 10 9 14 14 C 1.50238 * 130.84191 * 179.97438 * 9 7 2 15 15 H 1.09002 * 115.85614 * 359.65080 * 14 9 7 16 16 C 1.55838 * 101.05281 * 233.96700 * 14 9 7 17 17 H 1.09006 * 110.76348 * 85.61756 * 16 14 9 18 18 N 1.46499 * 110.62976 * 208.57446 * 16 14 9 19 19 C 1.34777 * 119.99976 * 270.02838 * 18 16 14 20 20 O 1.21292 * 119.99670 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00292 * 180.27119 * 19 18 16 22 22 H 1.09000 * 109.86647 * 304.02706 * 21 19 18 23 23 C 1.54104 * 109.87392 * 65.02791 * 21 19 18 24 24 C 1.54814 * 104.18378 * 121.45591 * 23 21 19 25 25 C 1.54998 * 102.09452 * 20.87990 * 24 23 21 26 26 H 1.08998 * 110.61823 * 81.63364 * 25 24 23 27 27 C 1.50697 * 110.62028 * 204.47397 * 25 24 23 28 28 N 1.34770 * 119.99755 * 295.00132 * 27 25 24 29 29 O 1.21280 * 119.99694 * 114.99473 * 27 25 24 30 30 O 1.43743 * 109.87881 * 183.01671 * 21 19 18 31 31 C 1.54856 * 103.44857 * 327.06380 * 16 14 9 32 32 H 0.97002 * 120.00437 * 359.97438 * 1 2 3 33 33 H 1.08999 * 110.62697 * 85.55190 * 12 10 9 34 34 H 1.09008 * 110.62650 * 208.57666 * 12 10 9 35 35 H 1.08990 * 110.62381 * 241.51179 * 13 12 10 36 36 H 1.08998 * 110.75682 * 118.55446 * 13 12 10 37 37 H 0.97001 * 120.00182 * 90.02276 * 18 16 14 38 38 H 1.09000 * 110.48543 * 240.12836 * 23 21 19 39 39 H 1.08997 * 110.49080 * 2.78411 * 23 21 19 40 40 H 1.09000 * 110.90698 * 139.07503 * 24 23 21 41 41 H 1.08996 * 110.90583 * 262.64452 * 24 23 21 42 42 H 0.96994 * 120.00505 * 359.97438 * 28 27 25 43 43 H 0.97004 * 119.99880 * 179.97438 * 28 27 25 44 44 H 1.08997 * 110.62776 * 118.48458 * 31 16 14 45 45 H 1.08998 * 110.62725 * 241.35185 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1499 -2.6706 0.0005 11 1 -0.8013 -1.7966 -0.0048 12 6 -0.2732 -3.6109 1.2371 13 6 1.0679 -4.3853 1.2357 14 6 1.8188 -3.8072 -0.0016 15 1 2.9014 -3.9343 -0.0084 16 6 1.0660 -4.3842 -1.2381 17 1 1.6218 -4.1879 -2.1550 18 7 0.8324 -5.8213 -1.0758 19 6 1.7471 -6.7069 -1.5179 20 8 2.7635 -6.3140 -2.0506 21 6 1.5040 -8.1854 -1.3565 22 1 1.3260 -8.4191 -0.3068 23 6 0.2879 -8.6117 -2.2017 24 6 0.8506 -9.6910 -3.1585 25 6 2.1334 -10.1455 -2.4168 26 1 1.8908 -10.8691 -1.6386 27 6 3.1298 -10.7261 -3.3870 28 7 2.8400 -11.8624 -4.0512 29 8 4.1923 -10.1707 -3.5700 30 8 2.6410 -8.9229 -1.8356 31 6 -0.2751 -3.6100 -1.2368 32 1 -0.4851 0.8400 0.0004 33 1 -0.3797 -3.0293 2.1527 34 1 -1.1123 -4.2962 1.1163 35 1 0.8939 -5.4543 1.1143 36 1 1.6277 -4.1899 2.1503 37 1 0.0194 -6.1355 -0.6500 38 1 -0.4897 -9.0340 -1.5653 39 1 -0.0992 -7.7645 -2.7677 40 1 0.1497 -10.5187 -3.2663 41 1 1.0940 -9.2607 -4.1299 42 1 1.9904 -12.3067 -3.9046 43 1 3.4812 -12.2360 -4.6759 44 1 -0.3831 -3.0275 -2.1517 45 1 -1.1141 -4.2955 -1.1182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096004657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:53 Heat of formation + Delta-G solvation = -94.327284 kcal Electronic energy + Delta-G solvation = -28254.356849 eV Core-core repulsion = 24272.038918 eV Total energy + Delta-G solvation = -3982.317932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80779 -41.07340 -39.98575 -38.73587 -35.52310 -34.86962 -34.29006 -33.03457 -31.40157 -30.99574 -30.49733 -28.99877 -26.35627 -25.50996 -23.22276 -22.80198 -21.80219 -21.57749 -21.16954 -20.16864 -19.14841 -18.75098 -18.31617 -17.59695 -17.51877 -16.98182 -16.83710 -16.47611 -15.96880 -15.83946 -15.59718 -15.50770 -15.07602 -14.73303 -14.48815 -14.08608 -13.92762 -13.47644 -13.24542 -13.19518 -12.89823 -12.80085 -12.75323 -12.61369 -12.55536 -12.36049 -12.02348 -11.93946 -11.89886 -11.56782 -11.40977 -11.16120 -11.04310 -10.88344 -10.77233 -10.71855 -10.45501 -10.00159 -8.86294 -7.80978 -5.19971 1.44391 1.46782 1.52017 1.52969 1.61880 1.82933 2.35783 2.49679 3.08449 3.31872 3.41009 3.52433 3.77496 3.81880 3.89828 3.96892 4.08317 4.10007 4.15091 4.18847 4.41601 4.45275 4.47999 4.62299 4.65436 4.72417 4.82442 4.86755 4.98113 4.98578 5.07741 5.10128 5.16186 5.23221 5.32826 5.47256 5.53931 5.64018 5.77405 5.88661 5.89767 6.28350 6.45646 6.66049 7.05418 7.32815 7.35057 7.67872 8.54110 9.25500 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027244 B = 0.002753 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.499168 B =10167.591374 C =10654.275916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.061 4.061 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.229 4.229 8 H 0.066 0.934 9 N -0.620 5.620 10 C 0.138 3.862 11 H 0.122 0.878 12 C -0.123 4.123 13 C -0.114 4.114 14 C 0.113 3.887 15 H 0.057 0.943 16 C 0.146 3.854 17 H 0.044 0.956 18 N -0.689 5.689 19 C 0.499 3.501 20 O -0.586 6.586 21 C 0.059 3.941 22 H 0.136 0.864 23 C -0.138 4.138 24 C -0.134 4.134 25 C 0.048 3.952 26 H 0.146 0.854 27 C 0.512 3.488 28 N -0.824 5.824 29 O -0.591 6.591 30 O -0.371 6.371 31 C -0.123 4.123 32 H 0.250 0.750 33 H 0.035 0.965 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.040 0.960 37 H 0.419 0.581 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.146 0.854 41 H 0.058 0.942 42 H 0.423 0.577 43 H 0.410 0.590 44 H 0.043 0.957 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.961 -28.801 -2.915 30.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.254 4.254 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.358 4.358 8 H 0.084 0.916 9 N -0.342 5.342 10 C 0.032 3.968 11 H 0.139 0.861 12 C -0.162 4.162 13 C -0.154 4.154 14 C 0.005 3.995 15 H 0.075 0.925 16 C 0.039 3.961 17 H 0.062 0.938 18 N -0.343 5.343 19 C 0.286 3.714 20 O -0.465 6.465 21 C -0.002 4.002 22 H 0.154 0.846 23 C -0.175 4.175 24 C -0.172 4.172 25 C -0.012 4.012 26 H 0.164 0.836 27 C 0.297 3.703 28 N -0.390 5.390 29 O -0.471 6.471 30 O -0.289 6.289 31 C -0.163 4.163 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.258 0.742 38 H 0.162 0.838 39 H 0.098 0.902 40 H 0.164 0.836 41 H 0.077 0.923 42 H 0.256 0.744 43 H 0.242 0.758 44 H 0.062 0.938 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.386 -27.652 -3.269 29.080 hybrid contribution 0.778 1.143 -0.241 1.404 sum -7.607 -26.508 -3.511 27.801 Atomic orbital electron populations 1.69642 1.05714 1.25201 1.58549 1.25378 0.96610 1.00037 1.03331 0.85204 0.77254 0.79429 0.77734 1.21257 1.21255 1.20854 1.19240 0.90373 0.83805 1.42369 0.91619 1.46741 1.03278 0.99303 1.84842 1.23719 0.85605 0.95584 0.91902 0.86127 1.22936 0.96855 0.97965 0.98432 1.22803 0.96551 0.99528 0.96482 1.23348 0.95520 0.85112 0.95523 0.92514 1.22061 0.97423 0.79251 0.97402 0.93791 1.45807 1.22993 1.04906 1.60615 1.21376 0.82867 0.89733 0.77422 1.90748 1.29564 1.81403 1.44739 1.22976 0.87747 0.86995 1.02490 0.84630 1.23079 0.96308 0.99864 0.98292 1.23185 0.95014 1.00762 0.98245 1.23484 0.92456 0.89265 0.96034 0.83650 1.20779 0.86992 0.81170 0.81381 1.43495 1.24279 1.25539 1.45716 1.90808 1.27925 1.61899 1.66441 1.89191 1.29107 1.32199 1.78407 1.23128 0.95223 0.98219 0.99719 0.94008 0.94606 0.88657 0.88990 0.94124 0.74247 0.83772 0.90248 0.83598 0.92285 0.74409 0.75783 0.93829 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.04 10.46 21.65 0.23 -54.81 16 2 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 3 Si 0.97 47.23 29.55 68.60 2.03 49.26 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 7 C -0.23 -13.39 10.59 84.03 0.89 -12.50 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.62 -32.22 2.99 -615.25 -1.84 -34.06 16 10 C 0.14 6.11 4.72 46.23 0.22 6.33 16 11 H 0.12 6.27 5.52 -2.39 -0.01 6.26 16 12 C -0.12 -4.32 6.44 32.21 0.21 -4.11 16 13 C -0.11 -3.96 6.32 32.21 0.20 -3.76 16 14 C 0.11 4.94 5.35 46.23 0.25 5.19 16 15 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 16 C 0.15 5.50 3.14 46.61 0.15 5.65 16 17 H 0.04 2.02 7.58 -2.38 -0.02 2.00 16 18 N -0.69 -18.20 3.68 -434.90 -1.60 -19.80 16 19 C 0.50 15.42 6.95 87.66 0.61 16.03 16 20 O -0.59 -26.62 16.19 15.64 0.25 -26.37 16 21 C 0.06 1.14 3.84 30.22 0.12 1.26 16 22 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 23 C -0.14 -1.26 6.61 31.59 0.21 -1.06 16 24 C -0.13 -1.15 6.57 31.90 0.21 -0.94 16 25 C 0.05 0.72 3.76 30.53 0.11 0.83 16 26 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 27 C 0.51 10.43 7.48 87.66 0.66 11.09 16 28 N -0.82 -6.42 8.86 -173.54 -1.54 -7.96 16 29 O -0.59 -21.03 17.40 15.17 0.26 -20.77 16 30 O -0.37 -10.34 10.04 -121.20 -1.22 -11.56 16 31 C -0.12 -4.44 6.20 32.22 0.20 -4.24 16 32 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 2.42 7.82 -2.38 -0.02 2.40 16 35 H 0.09 2.40 6.39 -2.39 -0.02 2.38 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.42 6.99 7.92 -92.71 -0.73 6.25 16 38 H 0.14 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.08 0.95 7.69 -2.39 -0.02 0.93 16 40 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 41 H 0.06 0.84 8.05 -2.39 -0.02 0.82 16 42 H 0.42 -0.65 8.83 -92.71 -0.82 -1.47 16 43 H 0.41 2.94 8.93 -92.71 -0.83 2.11 16 44 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.10 2.69 7.39 -2.39 -0.02 2.67 16 Total: -1.00 -96.82 361.35 -0.26 -97.08 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -1.33 Total: 12.25 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 4.49 Total: 16.74 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -4.75 Total: -116.63 kcal Atomic # 8 Polarization: -58.00 SS G_CDS: -0.70 Total: -58.69 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -96.82 -0.26 -97.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096004657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.751 kcal (2) G-P(sol) polarization free energy of solvation -96.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds