Wall clock time and date at job start Fri Apr 10 2020 18:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.50239 * 130.83895 * 359.93884 * 9 7 2 11 11 H 1.09002 * 115.85728 * 0.39396 * 10 9 7 12 12 C 1.55839 * 101.04862 * 234.00230 * 10 9 7 13 13 C 1.54217 * 103.56869 * 327.14719 * 12 10 9 14 14 C 1.50236 * 130.83578 * 180.27854 * 9 7 2 15 15 H 1.08998 * 115.86329 * 359.60462 * 14 9 7 16 16 C 1.55849 * 101.04933 * 233.93334 * 14 9 7 17 17 H 1.09001 * 110.62609 * 208.41770 * 16 14 9 18 18 N 1.46496 * 110.62824 * 85.54900 * 16 14 9 19 19 C 1.34776 * 119.99946 * 154.99617 * 18 16 14 20 20 O 1.21281 * 120.00137 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99980 * 180.02562 * 19 18 16 22 22 N 1.46503 * 109.46878 * 180.02562 * 21 19 18 23 23 C 1.46094 * 118.72685 * 90.00596 * 22 21 19 24 24 C 1.53022 * 109.92162 * 161.61676 * 23 22 21 25 25 O 1.43240 * 108.67155 * 49.16104 * 24 23 22 26 26 C 1.42963 * 112.98816 * 291.63726 * 25 24 23 27 27 C 1.33863 * 118.73004 * 269.73258 * 22 21 19 28 28 O 1.21284 * 118.83315 * 1.90744 * 27 22 21 29 29 C 1.54857 * 103.44378 * 327.06419 * 16 14 9 30 30 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 31 31 H 1.09003 * 110.62763 * 85.55579 * 12 10 9 32 32 H 1.09003 * 110.62437 * 208.41382 * 12 10 9 33 33 H 1.08992 * 110.65005 * 241.43784 * 13 12 10 34 34 H 1.09007 * 110.49778 * 118.49404 * 13 12 10 35 35 H 0.96999 * 120.00497 * 335.00790 * 18 16 14 36 36 H 1.08995 * 109.47401 * 300.00427 * 21 19 18 37 37 H 1.09002 * 109.46866 * 60.00714 * 21 19 18 38 38 H 1.09003 * 109.39205 * 281.75357 * 23 22 21 39 39 H 1.08997 * 109.39434 * 41.56799 * 23 22 21 40 40 H 1.09008 * 109.60307 * 168.91660 * 24 23 22 41 41 H 1.08994 * 109.60260 * 289.23912 * 24 23 22 42 42 H 1.09000 * 109.41968 * 169.70020 * 26 25 24 43 43 H 1.09002 * 109.41562 * 289.56186 * 26 25 24 44 44 H 1.08998 * 110.62677 * 118.49094 * 29 16 14 45 45 H 1.09001 * 110.62314 * 241.50961 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1500 -2.6706 0.0150 11 1 -0.8014 -1.7966 0.0095 12 6 -0.2679 -3.6068 1.2552 13 6 1.0676 -4.3779 1.2547 14 6 1.8188 -3.8071 0.0143 15 1 2.9014 -3.9343 0.0083 16 6 1.0663 -4.3914 -1.2191 17 1 0.8950 -5.4605 -1.0932 18 7 1.8152 -4.1318 -2.4511 19 6 1.6505 -4.9341 -3.5215 20 8 0.8820 -5.8706 -3.4649 21 6 2.4213 -4.6674 -4.7887 22 7 2.0679 -5.6711 -5.7957 23 6 0.9504 -5.3987 -6.6965 24 6 1.0332 -6.3126 -7.9211 25 8 1.2323 -7.6593 -7.4756 26 6 2.5164 -7.8672 -6.8825 27 6 2.7847 -6.7998 -5.8584 28 8 3.6798 -6.9695 -5.0577 29 6 -0.2748 -3.6172 -1.2226 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3707 -3.0221 2.1693 32 1 -1.1092 -4.2905 1.1415 33 1 0.8938 -5.4477 1.1396 34 1 1.6260 -4.1748 2.1687 35 1 2.4297 -3.3827 -2.4965 36 1 2.1727 -3.6744 -5.1631 37 1 3.4902 -4.7206 -4.5818 38 1 0.0114 -5.5789 -6.1731 39 1 0.9911 -4.3585 -7.0194 40 1 0.1047 -6.2486 -8.4886 41 1 1.8684 -6.0058 -8.5505 42 1 2.5404 -8.8462 -6.4039 43 1 3.2839 -7.8228 -7.6553 44 1 -0.3826 -3.0401 -2.1410 45 1 -1.1137 -4.3018 -1.0973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097227075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:56 Heat of formation + Delta-G solvation = -78.443103 kcal Electronic energy + Delta-G solvation = -28504.669132 eV Core-core repulsion = 24523.039990 eV Total energy + Delta-G solvation = -3981.629142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94864 -41.12611 -39.75365 -38.71503 -36.40267 -35.29410 -34.42619 -31.53396 -30.98807 -30.78173 -30.16849 -29.07851 -26.96089 -26.07502 -24.84949 -23.06408 -21.56960 -21.45207 -20.43307 -19.98158 -18.86426 -18.76998 -18.39196 -18.18805 -17.11744 -16.90475 -16.73289 -16.44919 -15.99681 -15.83939 -15.68045 -15.40359 -15.17838 -14.68188 -14.51689 -14.33402 -13.90285 -13.76443 -13.67014 -13.23319 -12.91222 -12.85020 -12.76942 -12.76039 -12.68509 -12.27049 -12.12760 -11.96795 -11.91724 -11.73134 -11.62781 -11.32347 -11.01920 -10.95289 -10.79585 -10.52127 -9.96734 -9.86954 -8.87362 -7.75221 -5.15378 1.28286 1.50312 1.51849 1.59466 1.61558 1.66643 2.38737 2.51194 2.80355 3.27878 3.37474 3.43668 3.76513 3.80570 3.98437 4.00317 4.08048 4.17047 4.20525 4.24770 4.29597 4.38367 4.43912 4.46719 4.47281 4.59801 4.68216 4.73518 4.80475 4.84752 4.88014 5.06485 5.08064 5.14480 5.17205 5.35456 5.51170 5.58759 5.69178 5.79012 5.89526 6.23239 6.26614 6.60104 6.88556 7.06574 7.25613 7.72734 8.58626 9.32191 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.003282 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.357149 B = 8530.354158 C = 9188.394079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.975 3.025 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.274 1.274 7 C -0.216 4.216 8 H 0.085 0.915 9 N -0.609 5.609 10 C 0.141 3.859 11 H 0.119 0.881 12 C -0.132 4.132 13 C -0.120 4.120 14 C 0.126 3.874 15 H 0.099 0.901 16 C 0.140 3.860 17 H 0.076 0.924 18 N -0.702 5.702 19 C 0.493 3.507 20 O -0.582 6.582 21 C 0.092 3.908 22 N -0.586 5.586 23 C 0.072 3.928 24 C 0.045 3.955 25 O -0.385 6.385 26 C 0.060 3.940 27 C 0.480 3.520 28 O -0.585 6.585 29 C -0.129 4.129 30 H 0.246 0.754 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.408 0.592 36 H 0.143 0.857 37 H 0.116 0.884 38 H 0.059 0.941 39 H 0.118 0.882 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.132 0.868 43 H 0.121 0.879 44 H 0.039 0.961 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.131 -10.415 -15.843 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.199 1.199 7 C -0.344 4.344 8 H 0.102 0.898 9 N -0.330 5.330 10 C 0.035 3.965 11 H 0.136 0.864 12 C -0.171 4.171 13 C -0.160 4.160 14 C 0.019 3.981 15 H 0.117 0.883 16 C 0.033 3.967 17 H 0.094 0.906 18 N -0.352 5.352 19 C 0.279 3.721 20 O -0.462 6.462 21 C -0.034 4.034 22 N -0.318 5.318 23 C -0.050 4.050 24 C -0.031 4.031 25 O -0.304 6.304 26 C -0.020 4.020 27 C 0.270 3.730 28 O -0.466 6.466 29 C -0.170 4.170 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.243 0.757 36 H 0.160 0.840 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.106 0.894 42 H 0.150 0.850 43 H 0.139 0.861 44 H 0.058 0.942 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.934 -10.997 -15.437 19.179 hybrid contribution 0.487 1.658 0.607 1.832 sum 3.421 -9.338 -14.830 17.856 Atomic orbital electron populations 1.69702 1.06200 1.24839 1.58972 1.25405 0.96288 1.00264 1.03730 0.85121 0.77453 0.79693 0.77274 1.21405 1.22896 1.19898 1.19349 0.90736 0.82900 1.41436 0.89772 1.46714 1.02213 0.99499 1.84565 1.23702 0.86768 0.95038 0.91014 0.86379 1.22843 0.97118 0.98076 0.99082 1.22721 0.96475 0.98840 0.97962 1.23345 0.96912 0.84861 0.92987 0.88297 1.22375 0.92061 0.97876 0.84350 0.90613 1.45947 1.45067 1.31558 1.12663 1.21637 0.82523 0.81762 0.86199 1.90644 1.39631 1.31833 1.84073 1.21486 1.01269 0.94433 0.86231 1.47227 1.32859 1.18184 1.33491 1.22511 0.88345 1.03059 0.91117 1.23270 1.05920 0.80010 0.93915 1.88194 1.33679 1.30007 1.78489 1.22842 0.87631 0.97339 0.94138 1.21756 0.81274 0.83676 0.86317 1.90719 1.34390 1.78657 1.42828 1.23356 0.96271 0.97854 0.99504 0.94449 0.94196 0.91229 0.90494 0.92192 0.75667 0.83977 0.86575 0.92229 0.86370 0.84084 0.89365 0.85018 0.86141 0.94202 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.50 10.46 21.65 0.23 -53.27 16 2 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 3 Si 0.97 43.45 29.55 68.60 2.03 45.48 16 4 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.22 -11.03 10.59 84.03 0.89 -10.14 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.61 -28.38 2.98 -614.38 -1.83 -30.21 16 10 C 0.14 6.44 4.74 46.39 0.22 6.66 16 11 H 0.12 6.33 5.52 -2.39 -0.01 6.31 16 12 C -0.13 -5.16 6.41 31.99 0.21 -4.95 16 13 C -0.12 -4.24 6.41 31.99 0.21 -4.03 16 14 C 0.13 4.82 5.06 46.23 0.23 5.05 16 15 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 16 C 0.14 5.21 2.80 46.61 0.13 5.34 16 17 H 0.08 2.90 7.23 -2.39 -0.02 2.88 16 18 N -0.70 -23.64 5.07 -434.90 -2.21 -25.84 16 19 C 0.49 16.34 7.89 87.66 0.69 17.04 16 20 O -0.58 -23.68 16.08 -3.03 -0.05 -23.73 16 21 C 0.09 2.23 5.77 85.63 0.49 2.72 16 22 N -0.59 -13.63 2.32 -828.96 -1.92 -15.55 16 23 C 0.07 1.15 6.67 86.46 0.58 1.73 16 24 C 0.05 0.50 6.89 71.99 0.50 0.99 16 25 O -0.39 -6.90 10.86 -148.98 -1.62 -8.52 16 26 C 0.06 1.06 6.99 71.12 0.50 1.56 16 27 C 0.48 12.52 7.58 87.69 0.66 13.19 16 28 O -0.59 -19.97 16.38 -3.04 -0.05 -20.02 16 29 C -0.13 -5.25 6.25 32.38 0.20 -5.05 16 30 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.39 7.83 -2.39 -0.02 2.38 16 33 H 0.08 2.35 7.82 -2.39 -0.02 2.33 16 34 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.41 12.92 8.66 -92.71 -0.80 12.12 16 36 H 0.14 2.41 7.93 -2.39 -0.02 2.39 16 37 H 0.12 2.81 7.28 -2.39 -0.02 2.79 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.12 1.15 7.99 -2.39 -0.02 1.13 16 40 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.09 0.59 8.10 -2.39 -0.02 0.57 16 42 H 0.13 2.27 8.14 -2.39 -0.02 2.26 16 43 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.04 1.74 7.98 -2.39 -0.02 1.72 16 45 H 0.06 2.35 7.83 -2.39 -0.02 2.33 16 Total: -1.00 -74.41 361.89 0.76 -73.66 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.21 Total: 30.86 kcal Atomic # 6 Polarization: 21.18 SS G_CDS: 5.97 Total: 27.16 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -5.74 Total: -124.88 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -1.72 Total: -52.27 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -74.41 0.76 -73.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097227075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.787 kcal (2) G-P(sol) polarization free energy of solvation -74.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds