Wall clock time and date at job start Fri Apr 10 2020 18:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99675 * 2 1 4 4 H 1.48496 * 109.47355 * 264.98772 * 3 2 1 5 5 H 1.48509 * 109.47125 * 144.99136 * 3 2 1 6 6 H 1.48499 * 109.47397 * 24.99203 * 3 2 1 7 7 C 1.38804 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00147 * 189.06747 * 7 2 1 9 9 N 1.36941 * 120.00426 * 9.07185 * 7 2 1 10 10 C 1.50239 * 130.83238 * 9.78161 * 9 7 2 11 11 H 1.09000 * 115.86160 * 359.68022 * 10 9 7 12 12 C 1.55386 * 101.25915 * 234.04572 * 10 9 7 13 13 C 1.54849 * 103.48789 * 327.24911 * 12 10 9 14 14 C 1.50234 * 130.84252 * 190.12350 * 9 7 2 15 15 H 1.09000 * 115.86032 * 0.31979 * 14 9 7 16 16 C 1.55843 * 101.04881 * 233.92931 * 14 9 7 17 17 H 1.09004 * 110.62264 * 208.57587 * 16 14 9 18 18 N 1.46494 * 110.62614 * 85.55467 * 16 14 9 19 19 C 1.34779 * 119.99713 * 155.00202 * 18 16 14 20 20 O 1.21274 * 120.00444 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99704 * 180.02562 * 19 18 16 22 22 H 1.09003 * 109.86967 * 303.98624 * 21 19 18 23 23 C 1.54095 * 109.88430 * 64.99315 * 21 19 18 24 24 C 1.54807 * 104.19007 * 121.45282 * 23 21 19 25 25 C 1.54999 * 102.09088 * 20.88429 * 24 23 21 26 26 H 1.08995 * 110.61957 * 81.47417 * 25 24 23 27 27 C 1.50702 * 110.62048 * 204.31956 * 25 24 23 28 28 N 1.34781 * 119.99705 * 294.99869 * 27 25 24 29 29 O 1.21277 * 120.00259 * 114.99700 * 27 25 24 30 30 O 1.43748 * 109.87920 * 182.82849 * 21 19 18 31 31 C 1.55476 * 103.32940 * 326.97272 * 16 14 9 32 32 H 0.97000 * 119.99697 * 359.97438 * 1 2 3 33 33 H 1.09006 * 110.71385 * 208.69365 * 12 10 9 34 34 H 1.08999 * 110.63759 * 85.76979 * 12 10 9 35 35 H 1.09003 * 110.63105 * 241.38964 * 13 12 10 36 36 H 1.08995 * 110.63099 * 118.36481 * 13 12 10 37 37 H 0.97003 * 120.00369 * 334.99612 * 18 16 14 38 38 H 1.08994 * 110.48983 * 240.13320 * 23 21 19 39 39 H 1.09001 * 110.48427 * 2.78059 * 23 21 19 40 40 H 1.08998 * 110.90986 * 139.08357 * 24 23 21 41 41 H 1.09005 * 110.91203 * 262.68987 * 24 23 21 42 42 H 0.97005 * 120.00141 * 359.97438 * 28 27 25 43 43 H 0.96993 * 119.99849 * 180.02562 * 28 27 25 44 44 H 1.08992 * 110.61360 * 241.58977 * 31 16 14 45 45 H 1.08997 * 110.89167 * 118.55028 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6036 1.9854 -1.3947 5 1 3.4908 1.4732 0.8033 6 1 1.3987 2.6809 0.5915 7 6 2.0103 -1.2021 -0.0005 8 1 3.0802 -1.2080 0.1469 9 7 1.3386 -2.3806 -0.1880 10 6 -0.0811 -2.6471 -0.6013 11 1 -0.6969 -1.7662 -0.7825 12 6 -0.5636 -3.5724 0.5499 13 6 0.7113 -4.3610 0.9379 14 6 1.7923 -3.8048 -0.0374 15 1 2.8264 -3.9435 0.2782 16 6 1.4166 -4.3872 -1.4332 17 1 1.2011 -5.4532 -1.3591 18 7 2.4893 -4.1421 -2.4003 19 6 2.6277 -4.9480 -3.4717 20 8 1.8646 -5.8762 -3.6350 21 6 3.7316 -4.6962 -4.4663 22 1 3.6597 -3.6784 -4.8498 23 6 5.1017 -4.9068 -3.7932 24 6 5.7738 -6.0154 -4.6393 25 6 4.9875 -5.9281 -5.9722 26 1 5.3763 -5.1226 -6.5952 27 6 5.0445 -7.2414 -6.7091 28 7 6.2227 -7.7030 -7.1734 29 8 4.0304 -7.8830 -6.8843 30 8 3.6382 -5.6372 -5.5489 31 6 0.1354 -3.5955 -1.8189 32 1 -0.4850 0.8401 0.0004 33 1 -1.3423 -4.2499 0.1995 34 1 -0.9213 -2.9818 1.3933 35 1 0.5650 -5.4296 0.7798 36 1 0.9876 -4.1593 1.9728 37 1 3.1000 -3.3998 -2.2696 38 1 5.6896 -3.9898 -3.8295 39 1 4.9734 -5.2384 -2.7628 40 1 6.8304 -5.7984 -4.7961 41 1 5.6436 -6.9926 -4.1743 42 1 7.0338 -7.1897 -7.0335 43 1 6.2593 -8.5481 -7.6479 44 1 -0.7124 -4.2706 -1.9352 45 1 0.2940 -3.0197 -2.7307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097841233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:59 Heat of formation + Delta-G solvation = -70.682793 kcal Electronic energy + Delta-G solvation = -28302.426538 eV Core-core repulsion = 24321.133909 eV Total energy + Delta-G solvation = -3981.292630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.72003 -39.65820 -38.78708 -37.57864 -34.12467 -33.84330 -32.60422 -32.22255 -30.39605 -29.13492 -28.75048 -27.63722 -24.90396 -24.13737 -22.47219 -21.31731 -20.83798 -19.88872 -19.79037 -18.72349 -18.07526 -17.55974 -17.01058 -16.68409 -16.46347 -16.01599 -15.19882 -14.91312 -14.79458 -14.64637 -14.16479 -13.90599 -13.79666 -13.75061 -13.43951 -12.82933 -12.40392 -12.09713 -12.02529 -11.92616 -11.78731 -11.32890 -11.18277 -11.14162 -10.96662 -10.90693 -10.53297 -10.45358 -10.33715 -10.11366 -10.03208 -9.97927 -9.93970 -9.57838 -9.30995 -9.04708 -8.86013 -8.48648 -6.94450 -5.80558 -3.16809 2.31544 2.67662 2.92483 3.33191 3.37769 3.39380 3.40972 3.89173 4.13311 4.38216 4.41822 4.51467 4.69551 4.81192 4.87241 5.11735 5.16983 5.27646 5.32818 5.34770 5.55036 5.63772 5.67974 5.68942 5.88510 6.05561 6.10025 6.15923 6.29414 6.33546 6.43504 6.47816 6.51976 6.61321 6.76611 6.82933 6.95672 6.97213 7.12721 7.33368 7.45824 7.75344 7.96069 7.96861 8.09756 8.61370 9.01452 9.66528 10.50588 11.31309 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.003218 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.624388 B = 8697.751270 C = 9641.909610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.589 5.589 10 C 0.160 3.840 11 H 0.140 0.860 12 C -0.134 4.134 13 C -0.129 4.129 14 C 0.124 3.876 15 H 0.088 0.912 16 C 0.132 3.868 17 H 0.081 0.919 18 N -0.704 5.704 19 C 0.508 3.492 20 O -0.526 6.526 21 C 0.056 3.944 22 H 0.100 0.900 23 C -0.145 4.145 24 C -0.141 4.141 25 C 0.054 3.946 26 H 0.100 0.900 27 C 0.522 3.478 28 N -0.854 5.854 29 O -0.513 6.513 30 O -0.316 6.316 31 C -0.145 4.145 32 H 0.254 0.746 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.402 0.598 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.401 0.599 43 H 0.405 0.595 44 H 0.055 0.945 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.888 -9.710 -8.808 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.310 5.310 10 C 0.053 3.947 11 H 0.157 0.843 12 C -0.173 4.173 13 C -0.169 4.169 14 C 0.016 3.984 15 H 0.106 0.894 16 C 0.026 3.974 17 H 0.099 0.901 18 N -0.355 5.355 19 C 0.292 3.708 20 O -0.401 6.401 21 C -0.005 4.005 22 H 0.117 0.883 23 C -0.183 4.183 24 C -0.179 4.179 25 C -0.008 4.008 26 H 0.118 0.882 27 C 0.305 3.695 28 N -0.421 5.421 29 O -0.385 6.385 30 O -0.233 6.233 31 C -0.186 4.186 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.237 0.763 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.229 0.771 43 H 0.236 0.764 44 H 0.074 0.926 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.341 -10.406 -8.979 19.155 hybrid contribution 1.348 1.286 0.040 1.863 sum 14.690 -9.121 -8.939 19.465 Atomic orbital electron populations 1.69674 1.05041 1.25226 1.56107 1.24764 0.95552 0.97611 1.02486 0.86140 0.78545 0.83452 0.77576 1.21639 1.20828 1.21769 1.18941 0.90733 0.82237 1.42774 0.90541 1.46538 1.08664 0.98578 1.77242 1.23315 0.87294 0.95096 0.88976 0.84306 1.22936 0.95654 0.97955 1.00787 1.22884 0.97220 0.97579 0.99196 1.23166 0.96379 0.87123 0.91738 0.89432 1.22743 0.86943 0.98743 0.89007 0.90106 1.45910 1.33823 1.31726 1.24080 1.20233 0.85460 0.82964 0.82184 1.90721 1.44307 1.30495 1.74593 1.22752 0.94745 0.94765 0.88260 0.88291 1.22946 0.94251 0.99968 1.01117 1.23116 0.99983 1.00862 0.93961 1.23026 0.85704 0.95404 0.96669 0.88217 1.20187 0.83610 0.86931 0.78785 1.43719 1.09650 1.27144 1.61552 1.90827 1.33971 1.58232 1.55516 1.89165 1.22337 1.62872 1.48880 1.23568 0.95852 0.98522 1.00647 0.93549 0.93445 0.92328 0.93084 0.92447 0.76331 0.88885 0.89192 0.88941 0.89669 0.77106 0.76364 0.92613 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.37 10.74 55.49 0.60 -24.78 16 2 C -0.01 -0.19 5.47 -17.43 -0.10 -0.29 16 3 Si 0.91 20.85 29.56 -169.99 -5.03 15.82 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.22 -5.55 10.55 -15.06 -0.16 -5.71 16 8 H 0.08 1.85 7.85 -52.48 -0.41 1.44 16 9 N -0.59 -13.59 2.98 -146.09 -0.43 -14.03 16 10 C 0.16 3.60 4.61 -63.05 -0.29 3.31 16 11 H 0.14 3.59 5.87 -51.93 -0.31 3.29 16 12 C -0.13 -2.69 6.42 -24.49 -0.16 -2.85 16 13 C -0.13 -2.36 6.44 -24.23 -0.16 -2.51 16 14 C 0.12 2.37 5.06 -62.80 -0.32 2.05 16 15 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 16 C 0.13 2.43 2.82 -65.10 -0.18 2.25 16 17 H 0.08 1.54 7.23 -51.93 -0.38 1.16 16 18 N -0.70 -11.58 5.07 -51.08 -0.26 -11.83 16 19 C 0.51 8.69 6.95 -10.98 -0.08 8.61 16 20 O -0.53 -11.45 16.17 -14.01 -0.23 -11.68 16 21 C 0.06 0.73 3.84 -27.31 -0.10 0.63 16 22 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 23 C -0.14 -1.28 6.61 -25.21 -0.17 -1.44 16 24 C -0.14 -1.06 6.57 -24.72 -0.16 -1.22 16 25 C 0.05 0.53 3.76 -26.83 -0.10 0.43 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 C 0.52 5.84 7.48 -10.98 -0.08 5.76 16 28 N -0.85 -4.78 8.86 31.22 0.28 -4.50 16 29 O -0.51 -8.83 17.41 -13.43 -0.23 -9.06 16 30 O -0.32 -4.88 10.03 -64.27 -0.64 -5.52 16 31 C -0.15 -2.95 6.25 -23.90 -0.15 -3.10 16 32 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.05 0.86 7.80 -51.93 -0.41 0.45 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.40 6.07 8.66 -40.82 -0.35 5.72 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.85 7.69 -51.93 -0.40 0.45 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 42 H 0.40 0.78 8.83 -40.82 -0.36 0.42 16 43 H 0.40 1.93 8.93 -40.82 -0.36 1.56 16 44 H 0.06 1.08 7.80 -51.93 -0.41 0.67 16 45 H 0.06 1.26 8.00 -51.93 -0.42 0.84 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -36.40 364.81 -9.37 -45.76 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.71 Total: 8.41 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -2.20 Total: 5.91 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.18 Total: -55.14 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.10 Total: -26.26 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.40 -9.37 -45.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097841233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.918 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds