Wall clock time and date at job start Fri Apr 10 2020 18:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00096 * 2 1 4 4 H 1.48499 * 109.47152 * 275.35989 * 3 2 1 5 5 H 1.48504 * 109.47090 * 35.36090 * 3 2 1 6 6 H 1.48497 * 109.46957 * 155.36162 * 3 2 1 7 7 C 1.38809 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 337.45765 * 7 2 1 9 9 N 1.36936 * 119.99956 * 157.46069 * 7 2 1 10 10 C 1.46499 * 120.00039 * 322.48543 * 9 7 2 11 11 C 1.53002 * 109.46606 * 266.25584 * 10 9 7 12 12 O 1.42900 * 109.47414 * 66.24804 * 11 10 9 13 13 C 1.46501 * 120.00036 * 142.48084 * 9 7 2 14 14 C 1.53044 * 109.46055 * 60.00021 * 13 9 7 15 15 C 1.53189 * 109.31316 * 178.62921 * 14 13 9 16 16 N 1.46921 * 108.77624 * 54.63306 * 15 14 13 17 17 C 1.34784 * 120.62676 * 126.37131 * 16 15 14 18 18 O 1.21274 * 120.00131 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99549 * 180.02562 * 17 16 15 20 20 C 1.50700 * 109.46630 * 179.97438 * 19 17 16 21 21 C 1.41386 * 128.00636 * 269.67324 * 20 19 17 22 22 N 1.30180 * 106.39531 * 179.89981 * 21 20 19 23 23 O 1.20920 * 111.60433 * 0.39301 * 22 21 20 24 24 C 1.34044 * 111.56655 * 359.74480 * 23 22 21 25 25 C 1.46926 * 118.74285 * 306.64348 * 16 15 14 26 26 C 1.52769 * 109.00611 * 53.30869 * 25 16 15 27 27 H 0.97008 * 119.99804 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46900 * 26.25275 * 10 9 7 29 29 H 1.08993 * 109.47128 * 146.25696 * 10 9 7 30 30 H 1.09001 * 109.46675 * 186.25026 * 11 10 9 31 31 H 1.08995 * 109.47339 * 306.24589 * 11 10 9 32 32 H 0.96697 * 114.00021 * 179.97438 * 12 11 10 33 33 H 1.08996 * 109.46222 * 179.97438 * 13 9 7 34 34 H 1.08999 * 109.49627 * 58.67806 * 14 13 9 35 35 H 1.09000 * 109.52106 * 298.59871 * 14 13 9 36 36 H 1.09001 * 109.58452 * 294.84394 * 15 14 13 37 37 H 1.09001 * 109.70282 * 174.49557 * 15 14 13 38 38 H 1.09003 * 109.47296 * 59.99916 * 19 17 16 39 39 H 1.08996 * 109.47263 * 299.99381 * 19 17 16 40 40 H 1.07997 * 126.80071 * 0.03854 * 21 20 19 41 41 H 1.08003 * 126.77767 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.58976 * 173.14398 * 25 16 15 43 43 H 1.08994 * 109.58390 * 293.57014 * 25 16 15 44 44 H 1.08991 * 109.56328 * 185.55128 * 26 25 16 45 45 H 1.08994 * 109.35612 * 65.50037 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3845 2.1118 -1.3939 5 1 1.5089 2.6173 0.8103 6 1 3.5998 1.4100 0.5837 7 6 2.0102 -1.2022 -0.0005 8 1 1.5320 -2.1019 0.3576 9 7 3.3011 -1.2473 -0.4551 10 6 3.7019 -0.4320 -1.6044 11 6 3.5790 -1.2604 -2.8849 12 8 2.2031 -1.5605 -3.1279 13 6 4.2814 -2.1109 0.2078 14 6 3.8120 -3.5657 0.1336 15 6 4.8557 -4.4693 0.7976 16 7 5.1023 -3.9837 2.1621 17 6 4.9916 -4.8149 3.2173 18 8 4.6854 -5.9757 3.0453 19 6 5.2471 -4.3015 4.6109 20 6 5.0578 -5.4215 5.6013 21 6 3.8733 -5.7956 6.2765 22 7 4.1835 -6.8138 7.0259 23 8 5.3520 -7.1060 6.9187 24 6 5.9844 -6.2990 6.0553 25 6 5.4659 -2.5733 2.3551 26 6 4.4207 -1.6922 1.6732 27 1 -0.4850 0.8401 0.0004 28 1 3.0542 0.4419 -1.6734 29 1 4.7353 -0.1094 -1.4782 30 1 3.9809 -0.6932 -3.7244 31 1 4.1390 -2.1887 -2.7723 32 1 2.0499 -2.0845 -3.9260 33 1 5.2459 -2.0147 -0.2906 34 1 3.6905 -3.8560 -0.9099 35 1 2.8591 -3.6679 0.6530 36 1 5.7830 -4.4381 0.2254 37 1 4.4843 -5.4934 0.8356 38 1 4.5477 -3.4962 4.8354 39 1 6.2679 -3.9254 4.6780 40 1 2.9029 -5.3303 6.1865 41 1 7.0269 -6.3405 5.7762 42 1 5.4946 -2.3458 3.4207 43 1 6.4439 -2.3843 1.9126 44 1 4.7325 -0.6491 1.7255 45 1 3.4624 -1.8117 2.1785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098458743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:02 Heat of formation + Delta-G solvation = 14.127335 kcal Electronic energy + Delta-G solvation = -28242.857630 eV Core-core repulsion = 24265.242643 eV Total energy + Delta-G solvation = -3977.614986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.01802 -40.09562 -37.85382 -36.35365 -34.79428 -34.69591 -32.40449 -31.99560 -31.11139 -30.80282 -28.88098 -27.85055 -25.04973 -23.39596 -23.01377 -22.87961 -21.96595 -21.07135 -19.96357 -18.83124 -17.95491 -17.70802 -17.10856 -16.74696 -16.32849 -15.79512 -15.51378 -15.24103 -14.81685 -14.76075 -13.96832 -13.89645 -13.65907 -13.39194 -13.28226 -13.11325 -12.88457 -12.79591 -12.47368 -12.21074 -11.98398 -11.89141 -11.68790 -11.33995 -11.14271 -10.85765 -10.75309 -10.58131 -10.44008 -10.34694 -10.00189 -9.88677 -9.72130 -9.54875 -9.40529 -9.15828 -8.54519 -8.39155 -6.81534 -5.90194 -3.31212 1.39260 2.12889 2.65815 3.06153 3.21856 3.32080 3.44970 3.48299 4.17096 4.53307 4.56667 4.58114 4.67513 4.76008 4.94115 5.04168 5.05807 5.22236 5.32406 5.38436 5.43010 5.50261 5.52365 5.58897 5.66364 5.77509 5.83987 5.86079 5.90638 5.98668 6.08299 6.12162 6.12584 6.30094 6.39798 6.50424 6.71008 6.73726 6.95044 6.98047 7.48835 8.09857 8.14772 8.22606 8.39874 8.48328 9.02115 9.79228 10.15192 11.25949 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.003162 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.881893 B = 8852.275235 C = 9402.714478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.042 3.958 3 Si 0.872 3.128 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.593 5.593 10 C 0.132 3.868 11 C 0.061 3.939 12 O -0.537 6.537 13 C 0.181 3.819 14 C -0.138 4.138 15 C 0.114 3.886 16 N -0.604 5.604 17 C 0.515 3.485 18 O -0.542 6.542 19 C -0.065 4.065 20 C -0.180 4.180 21 C 0.006 3.994 22 N -0.368 5.368 23 O 0.095 5.905 24 C -0.049 4.049 25 C 0.107 3.893 26 C -0.144 4.144 27 H 0.260 0.740 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.022 0.978 31 H 0.031 0.969 32 H 0.354 0.646 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.189 0.811 41 H 0.214 0.786 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.336 -5.864 5.317 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.158 4.158 3 Si 0.703 3.297 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.314 5.314 10 C 0.006 3.994 11 C -0.019 4.019 12 O -0.338 6.338 13 C 0.073 3.927 14 C -0.178 4.178 15 C -0.008 4.008 16 N -0.338 5.338 17 C 0.303 3.697 18 O -0.419 6.419 19 C -0.105 4.105 20 C -0.184 4.184 21 C -0.173 4.173 22 N -0.072 5.072 23 O 0.031 5.969 24 C -0.131 4.131 25 C -0.016 4.016 26 C -0.183 4.183 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.197 0.803 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.206 0.794 41 H 0.230 0.770 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.244 -6.807 6.656 17.972 hybrid contribution 0.671 1.551 -1.403 2.196 sum 15.914 -5.256 5.253 17.564 Atomic orbital electron populations 1.69891 1.05979 1.26270 1.51789 1.25359 0.94872 0.97364 0.98253 0.87023 0.80533 0.85519 0.76664 1.21743 1.23243 1.19578 1.18490 0.86138 0.93899 1.39079 0.90733 1.44081 1.07918 1.49898 1.29475 1.21347 0.97535 0.94450 0.86098 1.22902 0.83348 0.97891 0.97783 1.86923 1.24451 1.75423 1.47009 1.20298 0.91478 0.89859 0.91032 1.22328 0.98934 0.96054 1.00474 1.21675 0.98840 0.99426 0.80894 1.48135 1.68389 1.10412 1.06837 1.20391 0.77235 0.85919 0.86186 1.90700 1.47778 1.17618 1.85827 1.19953 1.04913 0.95946 0.89708 1.20778 0.93384 1.01673 1.02610 1.24966 1.01183 0.95227 0.95941 1.73852 0.95136 1.16195 1.21998 1.84795 1.16138 1.46709 1.49298 1.25715 1.00737 0.92203 0.94473 1.21807 0.98697 0.80021 1.01105 1.22298 0.99224 0.98416 0.98409 0.93029 0.91703 0.93272 0.96003 0.95030 0.80285 0.93195 0.91349 0.90834 0.92165 0.89625 0.87100 0.87561 0.79356 0.76958 0.90299 0.91648 0.91147 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.97 55.49 0.78 -26.54 16 2 C 0.04 1.17 5.28 -17.43 -0.09 1.07 16 3 Si 0.87 21.49 25.06 -169.99 -4.26 17.23 16 4 H -0.29 -7.11 6.67 56.52 0.38 -6.73 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.25 -6.52 8.42 -15.06 -0.13 -6.65 16 8 H 0.08 2.19 7.03 -52.49 -0.37 1.82 16 9 N -0.59 -12.76 1.99 -165.62 -0.33 -13.09 16 10 C 0.13 2.67 4.72 -4.04 -0.02 2.65 16 11 C 0.06 1.09 7.38 37.16 0.27 1.37 16 12 O -0.54 -11.00 13.36 -35.23 -0.47 -11.47 16 13 C 0.18 3.09 2.60 -67.89 -0.18 2.91 16 14 C -0.14 -2.29 5.30 -26.61 -0.14 -2.44 16 15 C 0.11 1.59 6.43 -3.72 -0.02 1.56 16 16 N -0.60 -7.82 2.98 -173.03 -0.52 -8.34 16 17 C 0.52 6.90 7.69 -10.98 -0.08 6.82 16 18 O -0.54 -9.39 15.45 5.56 0.09 -9.30 16 19 C -0.06 -0.61 4.63 -29.03 -0.13 -0.75 16 20 C -0.18 -1.95 4.82 -104.42 -0.50 -2.45 16 21 C 0.01 0.07 12.16 -17.05 -0.21 -0.14 16 22 N -0.37 -4.94 12.07 30.36 0.37 -4.58 16 23 O 0.09 1.11 11.20 17.17 0.19 1.31 16 24 C -0.05 -0.46 12.26 29.74 0.36 -0.10 16 25 C 0.11 1.19 6.31 -3.93 -0.02 1.16 16 26 C -0.14 -2.22 5.29 -26.83 -0.14 -2.36 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.07 1.52 3.46 -51.93 -0.18 1.34 16 29 H 0.05 0.85 8.00 -51.93 -0.42 0.44 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.35 5.27 9.12 45.56 0.42 5.68 16 33 H 0.05 0.76 7.84 -51.93 -0.41 0.35 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.47 7.06 -51.93 -0.37 1.10 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 38 H 0.11 0.94 7.68 -51.93 -0.40 0.54 16 39 H 0.11 0.67 7.95 -51.93 -0.41 0.26 16 40 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 41 H 0.21 1.10 8.06 -52.48 -0.42 0.67 16 42 H 0.08 0.67 5.93 -51.93 -0.31 0.37 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.45 7.71 -51.93 -0.40 1.05 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -35.83 362.33 -5.48 -41.32 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.75 Total: 5.34 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.04 Total: 2.67 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.30 Total: -52.55 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.19 Total: -19.46 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.26 Total: 17.23 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.83 -5.48 -41.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098458743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.442 kcal (2) G-P(sol) polarization free energy of solvation -35.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds