Wall clock time and date at job start Fri Apr 10 2020 18:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.08998 * 110.67604 * 31.76092 * 10 9 7 12 12 C 1.54890 * 110.75007 * 268.32775 * 10 9 7 13 13 C 1.54267 * 104.19109 * 203.74349 * 12 10 9 14 14 C 1.53878 * 106.60189 * 23.61307 * 13 12 10 15 15 H 1.08997 * 110.07311 * 240.69448 * 14 13 12 16 16 C 1.52991 * 110.03348 * 119.28351 * 14 13 12 17 17 N 1.46499 * 109.47156 * 67.83334 * 16 14 13 18 18 C 1.34785 * 120.00050 * 179.97438 * 17 16 14 19 19 O 1.21285 * 119.99940 * 0.02562 * 18 17 16 20 20 C 1.50696 * 120.00252 * 180.02562 * 18 17 16 21 21 C 1.52993 * 109.47453 * 180.02562 * 20 18 17 22 22 H 1.09007 * 110.53659 * 305.69481 * 21 20 18 23 23 C 1.54232 * 110.60967 * 182.85273 * 21 20 18 24 24 C 1.51672 * 103.38118 * 241.51746 * 23 21 20 25 25 O 1.21231 * 125.35947 * 179.97438 * 24 23 21 26 26 N 1.33873 * 109.24294 * 359.87293 * 24 23 21 27 27 C 1.33880 * 114.47572 * 0.08484 * 26 24 23 28 28 O 1.21222 * 125.39380 * 180.02562 * 27 26 24 29 29 C 1.54265 * 106.59471 * 359.97438 * 14 13 12 30 30 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 32 32 H 1.08993 * 110.49031 * 322.41844 * 12 10 9 33 33 H 1.08998 * 110.48502 * 85.06847 * 12 10 9 34 34 H 1.09003 * 110.03324 * 264.32742 * 13 12 10 35 35 H 1.08998 * 110.07303 * 142.92124 * 13 12 10 36 36 H 1.09002 * 109.47361 * 187.83761 * 16 14 13 37 37 H 1.09000 * 109.47104 * 307.83587 * 16 14 13 38 38 H 0.97000 * 120.00033 * 0.02562 * 17 16 14 39 39 H 1.09011 * 109.46972 * 300.00092 * 20 18 17 40 40 H 1.08999 * 109.47489 * 59.99311 * 20 18 17 41 41 H 1.09000 * 110.60179 * 359.97438 * 23 21 20 42 42 H 1.08998 * 110.60565 * 122.96109 * 23 21 20 43 43 H 0.96998 * 122.76676 * 180.08213 * 26 24 23 44 44 H 1.09000 * 110.48712 * 217.71358 * 29 14 13 45 45 H 1.08992 * 110.48749 * 95.06826 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 3.0015 -3.5536 0.5498 12 6 2.2961 -4.1608 -1.4316 13 6 2.4853 -5.6837 -1.2747 14 6 1.7857 -6.0808 0.0371 15 1 2.5073 -6.5145 0.7295 16 6 0.6661 -7.0835 -0.2487 17 7 1.2482 -8.3500 -0.6997 18 6 0.4460 -9.3874 -1.0109 19 8 -0.7578 -9.2723 -0.9180 20 6 1.0447 -10.6904 -1.4744 21 6 -0.0749 -11.6931 -1.7603 22 1 -0.7248 -11.7987 -0.8915 23 6 0.5116 -13.0598 -2.1687 24 6 -0.0167 -13.2621 -3.5760 25 8 0.2076 -14.2247 -4.2779 26 7 -0.7714 -12.2110 -3.9192 27 6 -0.8729 -11.2686 -2.9738 28 8 -1.5045 -10.2388 -3.0739 29 6 1.1964 -4.7851 0.6318 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0068 32 1 1.4301 -3.9465 -2.0578 33 1 3.1934 -3.7061 -1.8513 34 1 3.5470 -5.9243 -1.2193 35 1 2.0277 -6.2061 -2.1148 36 1 0.0887 -7.2523 0.6603 37 1 0.0127 -6.6868 -1.0258 38 1 2.2110 -8.4422 -0.7737 39 1 1.6221 -10.5219 -2.3835 40 1 1.6983 -11.0867 -0.6973 41 1 1.6010 -13.0252 -2.1685 42 1 0.1513 -13.8456 -1.5048 43 1 -1.2087 -12.1382 -4.7820 44 1 1.2909 -4.7864 1.7177 45 1 0.1528 -4.6712 0.3390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488974263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:39 Heat of formation + Delta-G solvation = -106.933950 kcal Electronic energy + Delta-G solvation = -26665.213269 eV Core-core repulsion = 22682.348671 eV Total energy + Delta-G solvation = -3982.864598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27074 -39.89510 -38.89740 -38.09846 -36.29282 -34.95709 -34.02002 -33.36893 -30.85743 -29.66643 -28.67007 -27.21397 -25.64055 -24.12518 -23.04342 -22.25931 -21.49716 -20.48687 -19.66118 -19.38187 -18.33359 -17.54455 -17.15251 -16.92631 -16.62364 -16.12206 -15.80657 -15.46373 -15.01223 -14.84485 -14.52513 -14.29904 -14.15085 -13.84367 -13.51492 -13.43565 -13.09449 -12.90765 -12.80416 -12.40444 -12.13990 -11.87067 -11.82557 -11.16987 -11.11718 -10.87047 -10.80076 -10.71335 -10.60208 -10.56610 -10.36123 -10.26303 -10.12576 -9.99336 -9.78916 -9.65240 -9.10232 -8.87989 -6.93945 -5.76236 -3.04860 1.07858 2.28262 2.32208 2.51761 2.95303 3.43099 3.48436 3.50934 3.54833 3.70555 3.84336 4.09060 4.49933 4.58884 4.67550 4.74887 4.83313 4.92411 4.94026 5.02947 5.06903 5.26204 5.53131 5.54177 5.55228 5.70099 5.74150 5.89229 5.96954 6.02995 6.06918 6.18872 6.22999 6.33141 6.38659 6.46599 6.56797 6.72125 6.86576 6.87463 7.10913 7.36200 7.45779 7.71020 8.11387 8.42616 9.53455 10.12599 10.46474 11.46452 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.001895 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.826828 B =14770.657739 C =14922.974951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.055 0.945 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.073 0.927 16 C 0.128 3.872 17 N -0.728 5.728 18 C 0.500 3.500 19 O -0.513 6.513 20 C -0.129 4.129 21 C -0.110 4.110 22 H 0.134 0.866 23 C -0.154 4.154 24 C 0.530 3.470 25 O -0.489 6.489 26 N -0.685 5.685 27 C 0.522 3.478 28 O -0.440 6.440 29 C -0.123 4.123 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.415 0.585 44 H 0.063 0.937 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 -29.471 -2.511 29.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.066 3.934 11 H 0.073 0.927 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.119 4.119 15 H 0.091 0.909 16 C 0.004 3.996 17 N -0.381 5.381 18 C 0.284 3.716 19 O -0.388 6.388 20 C -0.169 4.169 21 C -0.132 4.132 22 H 0.151 0.849 23 C -0.194 4.194 24 C 0.318 3.682 25 O -0.361 6.361 26 N -0.351 5.351 27 C 0.307 3.693 28 O -0.306 6.306 29 C -0.162 4.162 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.116 0.884 40 H 0.131 0.869 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.254 0.746 44 H 0.082 0.918 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.820 -29.143 -2.678 29.514 hybrid contribution 0.413 0.959 -0.596 1.202 sum 4.233 -28.184 -3.274 28.687 Atomic orbital electron populations 1.69668 1.05101 1.25547 1.57731 1.24759 0.95523 0.97728 1.03085 0.86130 0.78755 0.84208 0.77173 1.20580 1.21906 1.21893 1.19307 0.91014 0.84172 1.42533 0.91138 1.42407 1.05790 0.99802 1.88042 1.21155 0.94299 0.85630 0.92282 0.92660 1.23077 1.01340 0.92791 1.01319 1.22204 0.99273 0.98080 0.96236 1.21953 0.96519 0.95638 0.97828 0.90882 1.21551 0.95911 0.82145 0.99948 1.46021 1.10064 1.13221 1.68770 1.20383 0.87533 0.85284 0.78390 1.90827 1.14021 1.82978 1.50945 1.21611 0.97839 0.93162 1.04284 1.21832 0.97976 0.94176 0.99190 0.84868 1.22669 1.04415 0.98189 0.94112 1.20855 0.76830 0.80929 0.89633 1.90828 1.57222 1.30055 1.57986 1.44876 1.48355 1.21822 1.20089 1.20689 0.80903 0.82656 0.85012 1.90932 1.37627 1.22395 1.79625 1.22611 1.00538 0.93340 0.99758 0.93548 0.78179 0.91859 0.92612 0.92501 0.92443 0.91554 0.91157 0.76780 0.88359 0.86855 0.85817 0.85705 0.74583 0.91773 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.62 9.96 -15.06 -0.15 -6.77 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.98 5.23 -51.51 -0.27 -18.24 16 10 C 0.18 3.41 3.56 -65.95 -0.23 3.17 16 11 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 12 C -0.14 -2.47 6.51 -25.07 -0.16 -2.64 16 13 C -0.12 -1.50 6.18 -25.61 -0.16 -1.66 16 14 C -0.10 -1.19 2.96 -89.51 -0.27 -1.45 16 15 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 16 C 0.13 1.50 4.69 -4.05 -0.02 1.48 16 17 N -0.73 -6.47 5.34 -60.30 -0.32 -6.79 16 18 C 0.50 4.84 7.51 -10.98 -0.08 4.76 16 19 O -0.51 -7.43 13.76 -16.70 -0.23 -7.66 16 20 C -0.13 -0.57 5.02 -27.89 -0.14 -0.71 16 21 C -0.11 -0.54 2.69 -90.83 -0.24 -0.79 16 22 H 0.13 0.67 7.96 -51.92 -0.41 0.26 16 23 C -0.15 -0.38 6.70 -26.76 -0.18 -0.56 16 24 C 0.53 3.23 8.56 -10.91 -0.09 3.14 16 25 O -0.49 -4.73 18.02 5.60 0.10 -4.62 16 26 N -0.68 -4.37 5.48 -11.28 -0.06 -4.44 16 27 C 0.52 4.43 7.72 -11.09 -0.09 4.35 16 28 O -0.44 -5.97 15.65 -16.65 -0.26 -6.23 16 29 C -0.12 -1.93 5.99 -25.09 -0.15 -2.08 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.38 10.25 7.76 -40.82 -0.32 9.93 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.70 7.61 -51.93 -0.40 0.30 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.40 2.37 8.35 -40.82 -0.34 2.03 16 39 H 0.10 0.32 8.14 -51.92 -0.42 -0.11 16 40 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.12 0.05 7.74 -51.93 -0.40 -0.36 16 42 H 0.12 0.09 8.14 -51.93 -0.42 -0.33 16 43 H 0.41 2.29 8.96 -40.82 -0.37 1.93 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.17 7.73 -51.93 -0.40 0.76 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -37.49 372.72 -8.62 -46.10 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.83 Total: 6.76 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.06 Total: -0.28 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.07 Total: -57.07 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.39 Total: -18.51 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.49 -8.62 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488974263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.833 kcal (2) G-P(sol) polarization free energy of solvation -37.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds