Wall clock time and date at job start Fri Apr 10 2020 18:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.08998 * 110.67604 * 31.76092 * 10 9 7 12 12 C 1.54890 * 110.75007 * 268.32775 * 10 9 7 13 13 C 1.54267 * 104.19109 * 203.74349 * 12 10 9 14 14 C 1.53878 * 106.60189 * 23.61307 * 13 12 10 15 15 H 1.08997 * 110.07311 * 240.69448 * 14 13 12 16 16 C 1.52991 * 110.03348 * 119.28351 * 14 13 12 17 17 N 1.46499 * 109.47156 * 67.83334 * 16 14 13 18 18 C 1.34785 * 120.00050 * 179.97438 * 17 16 14 19 19 O 1.21285 * 119.99940 * 0.02562 * 18 17 16 20 20 C 1.50696 * 120.00252 * 180.02562 * 18 17 16 21 21 C 1.52993 * 109.47453 * 180.02562 * 20 18 17 22 22 H 1.09007 * 110.53659 * 305.69481 * 21 20 18 23 23 C 1.54232 * 110.60967 * 182.85273 * 21 20 18 24 24 C 1.51672 * 103.38118 * 241.51746 * 23 21 20 25 25 O 1.21231 * 125.35947 * 179.97438 * 24 23 21 26 26 N 1.33873 * 109.24294 * 359.87293 * 24 23 21 27 27 C 1.33880 * 114.47572 * 0.08484 * 26 24 23 28 28 O 1.21222 * 125.39380 * 180.02562 * 27 26 24 29 29 C 1.54265 * 106.59471 * 359.97438 * 14 13 12 30 30 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 32 32 H 1.08993 * 110.49031 * 322.41844 * 12 10 9 33 33 H 1.08998 * 110.48502 * 85.06847 * 12 10 9 34 34 H 1.09003 * 110.03324 * 264.32742 * 13 12 10 35 35 H 1.08998 * 110.07303 * 142.92124 * 13 12 10 36 36 H 1.09002 * 109.47361 * 187.83761 * 16 14 13 37 37 H 1.09000 * 109.47104 * 307.83587 * 16 14 13 38 38 H 0.97000 * 120.00033 * 0.02562 * 17 16 14 39 39 H 1.09011 * 109.46972 * 300.00092 * 20 18 17 40 40 H 1.08999 * 109.47489 * 59.99311 * 20 18 17 41 41 H 1.09000 * 110.60179 * 359.97438 * 23 21 20 42 42 H 1.08998 * 110.60565 * 122.96109 * 23 21 20 43 43 H 0.96998 * 122.76676 * 180.08213 * 26 24 23 44 44 H 1.09000 * 110.48712 * 217.71358 * 29 14 13 45 45 H 1.08992 * 110.48749 * 95.06826 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 3.0015 -3.5536 0.5498 12 6 2.2961 -4.1608 -1.4316 13 6 2.4853 -5.6837 -1.2747 14 6 1.7857 -6.0808 0.0371 15 1 2.5073 -6.5145 0.7295 16 6 0.6661 -7.0835 -0.2487 17 7 1.2482 -8.3500 -0.6997 18 6 0.4460 -9.3874 -1.0109 19 8 -0.7578 -9.2723 -0.9180 20 6 1.0447 -10.6904 -1.4744 21 6 -0.0749 -11.6931 -1.7603 22 1 -0.7248 -11.7987 -0.8915 23 6 0.5116 -13.0598 -2.1687 24 6 -0.0167 -13.2621 -3.5760 25 8 0.2076 -14.2247 -4.2779 26 7 -0.7714 -12.2110 -3.9192 27 6 -0.8729 -11.2686 -2.9738 28 8 -1.5045 -10.2388 -3.0739 29 6 1.1964 -4.7851 0.6318 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0068 32 1 1.4301 -3.9465 -2.0578 33 1 3.1934 -3.7061 -1.8513 34 1 3.5470 -5.9243 -1.2193 35 1 2.0277 -6.2061 -2.1148 36 1 0.0887 -7.2523 0.6603 37 1 0.0127 -6.6868 -1.0258 38 1 2.2110 -8.4422 -0.7737 39 1 1.6221 -10.5219 -2.3835 40 1 1.6983 -11.0867 -0.6973 41 1 1.6010 -13.0252 -2.1685 42 1 0.1513 -13.8456 -1.5048 43 1 -1.2087 -12.1382 -4.7820 44 1 1.2909 -4.7864 1.7177 45 1 0.1528 -4.6712 0.3390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488974263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:38 Heat of formation + Delta-G solvation = -136.397208 kcal Electronic energy + Delta-G solvation = -26666.490892 eV Core-core repulsion = 22682.348671 eV Total energy + Delta-G solvation = -3984.142220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.80290 -40.68636 -39.65936 -39.25226 -36.94707 -36.27843 -34.91314 -34.49688 -32.57993 -30.62914 -29.52468 -28.58354 -26.39973 -25.45556 -24.61936 -22.69261 -22.14703 -21.40519 -20.84607 -20.49382 -19.17603 -18.91320 -18.13748 -17.58456 -17.30599 -16.99976 -16.75422 -16.42312 -16.36336 -15.75607 -15.52716 -15.25616 -15.15706 -14.91646 -14.69033 -14.27042 -14.06224 -13.89478 -13.60944 -13.44879 -13.29560 -12.98922 -12.88001 -12.67749 -12.37501 -12.15902 -12.08575 -11.94639 -11.75694 -11.68619 -11.61743 -11.49072 -11.37366 -11.22991 -10.99603 -10.90940 -10.68513 -9.94316 -8.98290 -7.94312 -5.22606 0.51928 1.46413 1.47457 1.57437 1.76418 1.82030 1.85409 2.29251 2.56480 3.19077 3.26017 3.38021 3.46564 3.71661 3.74399 3.79914 3.83342 4.09629 4.32253 4.38245 4.44476 4.52579 4.60983 4.63968 4.68228 4.71961 4.80772 4.83147 4.87121 4.95176 4.98868 5.07070 5.10402 5.16694 5.22138 5.42753 5.49677 5.53661 5.63035 5.64581 5.68458 6.28560 6.34767 6.72302 6.89773 7.33276 7.46531 8.12435 8.33575 9.29747 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.001895 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.826828 B =14770.657739 C =14922.974951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.083 4.083 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.079 0.921 9 N -0.738 5.738 10 C 0.164 3.836 11 H 0.059 0.941 12 C -0.141 4.141 13 C -0.106 4.106 14 C -0.082 4.082 15 H 0.108 0.892 16 C 0.136 3.864 17 N -0.717 5.717 18 C 0.490 3.510 19 O -0.569 6.569 20 C -0.119 4.119 21 C -0.105 4.105 22 H 0.134 0.866 23 C -0.132 4.132 24 C 0.530 3.470 25 O -0.526 6.526 26 N -0.684 5.684 27 C 0.519 3.481 28 O -0.501 6.501 29 C -0.119 4.119 30 H 0.249 0.751 31 H 0.370 0.630 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.036 0.964 38 H 0.418 0.582 39 H 0.119 0.881 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.413 0.587 44 H 0.070 0.930 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.326 -32.213 -1.626 33.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.275 4.275 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.096 0.904 9 N -0.376 5.376 10 C 0.055 3.945 11 H 0.077 0.923 12 C -0.182 4.182 13 C -0.144 4.144 14 C -0.101 4.101 15 H 0.127 0.873 16 C 0.012 3.988 17 N -0.371 5.371 18 C 0.277 3.723 19 O -0.447 6.447 20 C -0.159 4.159 21 C -0.126 4.126 22 H 0.152 0.848 23 C -0.171 4.171 24 C 0.321 3.679 25 O -0.401 6.401 26 N -0.349 5.349 27 C 0.307 3.693 28 O -0.372 6.372 29 C -0.158 4.158 30 H 0.058 0.942 31 H 0.201 0.799 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.255 0.745 39 H 0.137 0.863 40 H 0.181 0.819 41 H 0.178 0.822 42 H 0.170 0.830 43 H 0.252 0.748 44 H 0.089 0.911 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.492 -31.961 -1.797 32.876 hybrid contribution -0.720 1.746 -0.910 2.097 sum 6.771 -30.214 -2.707 31.082 Atomic orbital electron populations 1.69836 1.06736 1.25866 1.59995 1.25608 0.96392 1.01275 1.04181 0.85065 0.78364 0.79809 0.76498 1.18693 1.22385 1.22137 1.19724 0.91513 0.85275 1.40293 0.90353 1.42660 1.05367 1.01296 1.88276 1.21488 0.94481 0.84484 0.94010 0.92313 1.22916 0.99803 0.96492 0.98976 1.22128 1.01502 0.94088 0.96673 1.21819 0.96701 0.93624 0.97917 0.87346 1.21205 0.95489 0.83605 0.98548 1.45861 1.11070 1.11920 1.68231 1.21397 0.86955 0.86841 0.77103 1.90821 1.16668 1.84068 1.53144 1.21743 0.97799 0.89781 1.06570 1.21898 0.97861 0.95644 0.97231 0.84815 1.22765 1.06225 0.96922 0.91199 1.21514 0.75838 0.79743 0.90816 1.90821 1.58551 1.31302 1.59437 1.44989 1.48103 1.21811 1.19966 1.21409 0.79998 0.81697 0.86195 1.90909 1.40407 1.25017 1.80889 1.22517 0.98939 0.94174 1.00180 0.94177 0.79867 0.94785 0.93037 0.89141 0.91840 0.92430 0.94532 0.74517 0.86290 0.81916 0.82234 0.83015 0.74813 0.91102 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.10 13.06 21.65 0.28 -60.81 16 2 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 3 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 6 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.24 -13.21 9.96 84.03 0.84 -12.38 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.74 -37.78 5.23 -316.88 -1.66 -39.43 16 10 C 0.16 6.28 3.56 46.27 0.16 6.44 16 11 H 0.06 2.21 8.09 -2.39 -0.02 2.19 16 12 C -0.14 -4.78 6.51 31.67 0.21 -4.57 16 13 C -0.11 -2.35 6.18 31.32 0.19 -2.16 16 14 C -0.08 -1.73 2.96 -10.07 -0.03 -1.76 16 15 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 16 C 0.14 3.07 4.69 86.38 0.40 3.47 16 17 N -0.72 -10.73 5.34 -463.06 -2.47 -13.20 16 18 C 0.49 8.47 7.51 87.65 0.66 9.13 16 19 O -0.57 -16.59 13.76 18.23 0.25 -16.33 16 20 C -0.12 -0.53 5.02 29.84 0.15 -0.38 16 21 C -0.10 -0.72 2.69 -10.93 -0.03 -0.75 16 22 H 0.13 1.00 7.96 -2.38 -0.02 0.99 16 23 C -0.13 -0.05 6.70 30.58 0.20 0.16 16 24 C 0.53 5.35 8.56 88.11 0.75 6.10 16 25 O -0.53 -9.42 18.02 -2.88 -0.05 -9.47 16 26 N -0.68 -8.33 5.48 -427.43 -2.34 -10.67 16 27 C 0.52 8.56 7.72 87.99 0.68 9.24 16 28 O -0.50 -14.31 15.65 18.43 0.29 -14.03 16 29 C -0.12 -3.68 5.99 31.66 0.19 -3.49 16 30 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.37 20.71 7.76 -92.71 -0.72 19.99 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.38 7.61 -2.39 -0.02 1.36 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.42 2.97 8.35 -92.71 -0.77 2.20 16 39 H 0.12 0.14 8.14 -2.38 -0.02 0.12 16 40 H 0.16 -0.78 8.14 -2.39 -0.02 -0.80 16 41 H 0.16 -0.95 7.74 -2.39 -0.02 -0.96 16 42 H 0.15 -0.59 8.14 -2.39 -0.02 -0.61 16 43 H 0.41 4.80 8.96 -92.71 -0.83 3.97 16 44 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.05 1.70 7.73 -2.39 -0.02 1.68 16 Total: -1.00 -89.06 372.72 -0.11 -89.17 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -1.29 Total: 21.38 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 4.85 Total: 4.67 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -6.19 Total: -124.11 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: 0.49 Total: -39.83 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -89.06 -0.11 -89.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488974263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.230 kcal (2) G-P(sol) polarization free energy of solvation -89.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds