Wall clock time and date at job start Fri Apr 10 2020 18:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86806 * 119.99951 * 2 1 4 4 H 1.48497 * 109.46756 * 239.99743 * 3 2 1 5 5 H 1.48500 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46916 * 119.99440 * 3 2 1 7 7 C 1.38947 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00091 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99675 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00197 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99587 * 179.97438 * 10 9 7 13 13 N 1.46908 * 109.46807 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99789 * 179.97438 * 13 12 10 15 15 H 1.08999 * 110.91948 * 328.90864 * 14 13 12 16 16 C 1.55158 * 111.00074 * 92.80626 * 14 13 12 17 17 C 1.54322 * 102.94206 * 153.57491 * 16 14 13 18 18 N 1.47027 * 107.27117 * 337.80680 * 17 16 14 19 19 C 1.34775 * 125.64985 * 179.20669 * 18 17 16 20 20 O 1.21605 * 120.00247 * 174.68664 * 19 18 17 21 21 C 1.47102 * 119.99812 * 354.68264 * 19 18 17 22 22 C 1.32092 * 118.87585 * 79.37210 * 21 19 18 23 23 C 1.50272 * 122.57612 * 180.36903 * 22 21 19 24 24 O 1.42893 * 110.09506 * 344.35798 * 23 22 21 25 25 C 1.43265 * 113.10123 * 50.52565 * 24 23 22 26 26 C 1.50417 * 118.87771 * 259.10825 * 21 19 18 27 27 C 1.47428 * 108.70123 * 358.94128 * 18 17 16 28 28 H 0.96994 * 120.00066 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00466 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47196 * 60.01021 * 12 10 9 31 31 H 1.09002 * 109.47529 * 300.00177 * 12 10 9 32 32 H 1.00894 * 111.00347 * 303.95997 * 13 12 10 33 33 H 1.09002 * 110.72343 * 271.93668 * 16 14 13 34 34 H 1.09002 * 110.71890 * 35.21418 * 16 14 13 35 35 H 1.09001 * 109.88688 * 218.38992 * 17 16 14 36 36 H 1.09000 * 109.88544 * 97.22381 * 17 16 14 37 37 H 1.07999 * 118.70973 * 0.39635 * 22 21 19 38 38 H 1.08995 * 109.36562 * 104.55271 * 23 22 21 39 39 H 1.09006 * 109.36462 * 224.29516 * 23 22 21 40 40 H 1.09005 * 109.64015 * 50.85728 * 25 24 23 41 41 H 1.09002 * 109.64160 * 171.47178 * 25 24 23 42 42 H 1.08998 * 109.45425 * 283.37092 * 26 21 19 43 43 H 1.08995 * 109.45671 * 43.31162 * 26 21 19 44 44 H 1.09000 * 110.36312 * 142.96868 * 27 18 17 45 45 H 1.08999 * 110.36412 * 265.28483 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 1.4981 -7.2708 0.0028 15 1 0.5464 -7.1969 0.5289 16 6 1.2949 -7.7945 -1.4435 17 6 1.2173 -9.3235 -1.2498 18 7 1.8806 -9.6363 0.0245 19 6 2.0105 -10.8656 0.5615 20 8 2.6635 -11.0203 1.5756 21 6 1.3622 -12.0203 -0.0791 22 6 1.9350 -12.5684 -1.1357 23 6 1.3416 -13.7443 -1.8589 24 8 0.3397 -14.3636 -1.0499 25 6 -0.6229 -13.4343 -0.5378 26 6 0.0728 -12.5403 0.4949 27 6 2.3858 -8.3832 0.6145 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6169 -4.9209 -0.8887 31 1 0.6174 -4.9204 0.8913 32 1 2.8334 -5.9127 -0.7797 33 1 0.3656 -7.4116 -1.8654 34 1 2.1440 -7.5282 -2.0730 35 1 1.7308 -9.8276 -2.0685 36 1 0.1749 -9.6401 -1.2125 37 1 2.8666 -12.1554 -1.4935 38 1 0.8936 -13.4056 -2.7930 39 1 2.1267 -14.4687 -2.0763 40 1 -1.0128 -12.8243 -1.3527 41 1 -1.4385 -13.9774 -0.0602 42 1 0.2828 -13.1164 1.3960 43 1 -0.5780 -11.7021 0.7437 44 1 2.2758 -8.4031 1.6988 45 1 3.4296 -8.2290 0.3411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491721304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:50 Heat of formation + Delta-G solvation = -117.202941 kcal Electronic energy + Delta-G solvation = -26661.656839 eV Core-core repulsion = 22678.346945 eV Total energy + Delta-G solvation = -3983.309895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53957 -40.28655 -39.88294 -38.80137 -36.22897 -35.62648 -34.81392 -33.26808 -32.13495 -31.65199 -30.06961 -28.10354 -26.95095 -25.57140 -24.90726 -24.14019 -22.07447 -21.41404 -21.05552 -19.92591 -19.34937 -18.49406 -17.80988 -17.61016 -17.22515 -17.11911 -16.77514 -16.32726 -16.06082 -15.91841 -15.64836 -15.31846 -15.19949 -14.68979 -14.60385 -14.16569 -14.13886 -13.92539 -13.86697 -13.63635 -13.52634 -13.47448 -13.13063 -12.92740 -12.68640 -12.52901 -12.44557 -12.40517 -12.12452 -11.99766 -11.80954 -11.50268 -11.28025 -10.54093 -10.36195 -10.13310 -10.01467 -9.82730 -9.33599 -8.46606 -5.95119 0.62768 1.35037 1.39850 1.42206 1.52653 1.83313 2.05651 2.29480 2.87620 2.92699 3.20767 3.29112 3.44430 3.61362 3.68689 3.78370 3.91953 3.99212 4.19333 4.24179 4.26208 4.27985 4.35311 4.42173 4.49859 4.52947 4.57470 4.63152 4.70466 4.74160 4.77019 4.81654 4.94670 4.97246 5.04147 5.13014 5.21992 5.41156 5.46409 5.86951 6.07713 6.13895 6.32720 6.35342 6.60347 6.91036 7.12895 7.56653 8.12146 8.70330 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.036606 B = 0.001893 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.718567 B =14784.058249 C =15005.629955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.436 3.564 11 O -0.626 6.626 12 C 0.069 3.931 13 N -0.675 5.675 14 C 0.085 3.915 15 H 0.105 0.895 16 C -0.156 4.156 17 C 0.106 3.894 18 N -0.609 5.609 19 C 0.564 3.436 20 O -0.588 6.588 21 C -0.156 4.156 22 C -0.139 4.139 23 C 0.088 3.912 24 O -0.399 6.399 25 C 0.063 3.937 26 C -0.107 4.107 27 C 0.114 3.886 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.350 0.650 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 -25.857 -8.088 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.063 4.063 13 N -0.307 5.307 14 C -0.026 4.026 15 H 0.123 0.877 16 C -0.195 4.195 17 C -0.016 4.016 18 N -0.342 5.342 19 C 0.354 3.646 20 O -0.469 6.469 21 C -0.159 4.159 22 C -0.159 4.159 23 C 0.012 3.988 24 O -0.318 6.318 25 C -0.013 4.013 26 C -0.144 4.144 27 C -0.009 4.009 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.171 0.829 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.135 0.865 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.066 -26.003 -6.812 27.556 hybrid contribution 0.142 1.466 -0.421 1.532 sum -5.924 -24.537 -7.234 26.258 Atomic orbital electron populations 1.69655 1.06723 1.29358 1.50207 1.26015 0.96563 1.02345 0.96305 0.85011 0.77786 0.76787 0.78899 1.19636 1.19473 1.19954 1.19613 0.92687 0.84095 1.50017 0.90417 1.41914 1.09372 1.04659 1.64978 1.20929 0.88255 0.86264 0.82222 1.90504 1.16008 1.87990 1.56716 1.21546 0.93761 0.87396 1.03566 1.59787 1.18891 1.00137 1.51895 1.22672 0.96546 0.87240 0.96135 0.87721 1.23406 1.04847 0.94281 0.96993 1.22194 0.98837 0.96042 0.84509 1.48558 1.56352 1.05550 1.23739 1.18761 0.79615 0.82919 0.83299 1.90812 1.43160 1.85375 1.27520 1.20746 0.99900 0.96748 0.98522 1.23621 0.99463 0.97892 0.94876 1.21725 0.91298 0.92924 0.92818 1.88125 1.40407 1.34555 1.68684 1.22842 0.90843 0.91743 0.95893 1.21025 0.92770 1.00638 0.99984 1.22073 0.98158 0.82476 0.98199 0.91281 0.76848 0.90398 0.87775 0.82935 0.87452 0.90035 0.89658 0.88933 0.85717 0.88361 0.86053 0.90354 0.86527 0.90636 0.88793 0.91931 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.65 13.05 21.66 0.28 -48.37 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -28.51 5.29 -306.98 -1.62 -30.14 16 10 C 0.44 19.97 7.82 87.66 0.69 20.66 16 11 O -0.63 -34.06 15.78 -3.07 -0.05 -34.11 16 12 C 0.07 2.15 6.03 85.56 0.52 2.67 16 13 N -0.68 -19.46 6.03 -488.38 -2.95 -22.41 16 14 C 0.09 1.75 3.38 46.31 0.16 1.91 16 15 H 0.10 1.97 7.83 -2.39 -0.02 1.95 16 16 C -0.16 -2.15 6.55 31.78 0.21 -1.94 16 17 C 0.11 1.32 6.40 86.73 0.55 1.87 16 18 N -0.61 -12.60 3.33 -816.05 -2.71 -15.32 16 19 C 0.56 14.04 7.09 86.57 0.61 14.65 16 20 O -0.59 -20.68 17.41 -4.05 -0.07 -20.75 16 21 C -0.16 -2.74 4.82 -18.59 -0.09 -2.83 16 22 C -0.14 -1.84 9.58 24.59 0.24 -1.61 16 23 C 0.09 0.80 7.04 71.10 0.50 1.30 16 24 O -0.40 -5.46 10.83 -148.98 -1.61 -7.07 16 25 C 0.06 0.59 6.89 72.08 0.50 1.09 16 26 C -0.11 -1.48 6.09 29.86 0.18 -1.30 16 27 C 0.11 2.80 6.58 86.85 0.57 3.37 16 28 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 29 H 0.40 18.62 7.90 -92.71 -0.73 17.88 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.10 2.93 8.09 -2.39 -0.02 2.92 16 32 H 0.35 10.51 7.89 -89.70 -0.71 9.80 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.19 7.75 -2.39 -0.02 1.17 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.12 1.55 7.99 -2.91 -0.02 1.53 16 38 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.08 0.44 8.09 -2.38 -0.02 0.42 16 41 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.78 8.09 -2.39 -0.02 1.76 16 45 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -77.02 376.55 -1.22 -78.24 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: -0.42 Total: 33.68 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 5.91 Total: 21.75 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -7.00 Total: -116.23 kcal Atomic # 8 Polarization: -60.19 SS G_CDS: -1.73 Total: -61.93 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -77.02 -1.22 -78.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491721304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.963 kcal (2) G-P(sol) polarization free energy of solvation -77.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds