Wall clock time and date at job start Fri Apr 10 2020 18:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00068 * 2 1 4 4 C 1.53001 * 109.47009 * 270.00002 * 3 2 1 5 5 N 1.46900 * 109.47028 * 180.02562 * 4 3 2 6 6 C 1.46899 * 111.00026 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46830 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00341 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99877 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00316 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99703 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00319 * 180.02562 * 10 9 7 13 13 N 1.31422 * 119.99757 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00352 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46763 * 90.00037 * 14 12 10 16 16 H 1.48496 * 109.47185 * 210.00170 * 14 12 10 17 17 H 1.48494 * 109.47085 * 330.00726 * 14 12 10 18 18 C 1.34783 * 120.00251 * 179.97438 * 2 1 3 19 19 O 1.21505 * 120.00542 * 184.79174 * 18 2 1 20 20 C 1.48156 * 119.99378 * 4.79178 * 18 2 1 21 21 C 1.39899 * 121.11746 * 142.65707 * 20 18 2 22 22 N 1.31767 * 119.78379 * 180.27802 * 21 20 18 23 23 N 1.28276 * 122.41770 * 359.75103 * 22 21 20 24 24 C 1.32272 * 122.43999 * 359.97438 * 23 22 21 25 25 O 1.35703 * 120.08653 * 180.02562 * 24 23 22 26 26 C 1.39242 * 119.83712 * 359.97438 * 24 23 22 27 27 H 1.08998 * 109.46970 * 264.70793 * 1 2 3 28 28 H 1.09001 * 109.46750 * 24.70665 * 1 2 3 29 29 H 1.08996 * 109.47091 * 144.71120 * 1 2 3 30 30 H 1.08993 * 109.46954 * 30.00507 * 3 2 1 31 31 H 1.09002 * 109.46676 * 150.00028 * 3 2 1 32 32 H 1.09003 * 109.47005 * 299.99811 * 4 3 2 33 33 H 1.08998 * 109.46901 * 59.99912 * 4 3 2 34 34 H 1.00897 * 111.00417 * 56.03487 * 5 4 3 35 35 H 1.08993 * 109.46662 * 299.99494 * 6 5 4 36 36 H 1.08999 * 109.47365 * 59.99614 * 6 5 4 37 37 H 0.97002 * 119.99852 * 0.02562 * 9 7 6 38 38 H 0.96997 * 119.99901 * 180.02562 * 13 12 10 39 39 H 1.07996 * 120.10988 * 0.05409 * 21 20 18 40 40 H 0.96696 * 113.99822 * 269.97588 * 25 24 23 41 41 H 1.07997 * 121.11650 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1876 2.9823 -1.4425 6 6 3.4503 3.4385 -2.8139 7 6 4.2035 4.7431 -2.7737 8 8 4.4935 5.2433 -1.7074 9 7 4.5560 5.3535 -3.9225 10 6 5.2408 6.5406 -3.8859 11 1 5.4982 6.9864 -2.9366 12 6 5.6037 7.1701 -5.0703 13 7 5.2900 6.6278 -6.2255 14 14 6.5374 8.7872 -5.0205 15 1 7.9973 8.5156 -5.0079 16 1 6.1942 9.5940 -6.2190 17 1 6.1630 9.5374 -3.7949 18 6 2.1389 -1.1672 0.0005 19 8 3.3508 -1.1691 0.0884 20 6 1.4020 -2.4480 -0.1061 21 6 1.9180 -3.5200 -0.8421 22 7 1.2378 -4.6455 -0.9239 23 7 0.1047 -4.8079 -0.3449 24 6 -0.4652 -3.8580 0.3780 25 8 -1.6655 -4.0817 0.9704 26 6 0.1699 -2.6283 0.5305 27 1 -0.3633 -0.0948 1.0233 28 1 -0.3633 0.9336 -0.4295 29 1 -0.3633 -0.8388 -0.5937 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5139 32 1 3.0416 0.9507 -1.9563 33 1 1.5001 1.8407 -1.9563 34 1 4.0450 2.9045 -0.9164 35 1 4.0457 2.6907 -3.3377 36 1 2.5046 3.5813 -3.3368 37 1 4.3244 4.9532 -4.7752 38 1 5.5436 7.0670 -7.0523 39 1 2.8692 -3.4242 -1.3446 40 1 -2.4253 -3.8447 0.4213 41 1 -0.2769 -1.8382 1.1157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493586721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:02 Heat of formation + Delta-G solvation = -27.732503 kcal Electronic energy + Delta-G solvation = -25818.583112 eV Core-core repulsion = 21735.612604 eV Total energy + Delta-G solvation = -4082.970509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01884 -40.23290 -38.34944 -38.21664 -36.70741 -35.39339 -34.04829 -33.71524 -32.02568 -31.26860 -29.97920 -27.71986 -26.66636 -25.38708 -25.04751 -23.89357 -22.40719 -20.78060 -19.51205 -19.20479 -18.38359 -17.92574 -17.60060 -17.43428 -16.82331 -16.42967 -16.13799 -15.62259 -15.60905 -14.73415 -14.62546 -14.42867 -14.37263 -14.00721 -13.80657 -13.62495 -13.41864 -13.22633 -12.89586 -12.72717 -12.36289 -12.17246 -11.95751 -11.61037 -11.53278 -11.25033 -11.04786 -11.02336 -10.79517 -10.41083 -10.38384 -10.24199 -9.99726 -9.53441 -9.30223 -8.52361 -8.16178 -7.98971 -6.44041 -3.85011 -0.29649 0.10284 1.96608 2.23179 2.70911 2.85082 3.16385 3.25228 3.31118 3.48014 3.64930 3.79474 3.87412 4.02856 4.09385 4.31720 4.43404 4.48629 4.68289 4.72497 4.81081 5.00653 5.03436 5.11011 5.14241 5.23286 5.31747 5.33526 5.59044 5.68719 5.75597 5.91513 5.94635 6.22111 6.62592 6.67676 7.07366 7.43498 7.53109 7.55050 7.98512 8.03517 8.58270 9.15276 9.51266 10.02394 10.73631 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032780 B = 0.001812 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.971582 B =15452.914208 C =15675.584471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.602 5.602 3 C 0.115 3.885 4 C 0.045 3.955 5 N -0.666 5.666 6 C 0.053 3.947 7 C 0.440 3.560 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.560 3.440 19 O -0.510 6.510 20 C -0.106 4.106 21 C 0.082 3.918 22 N -0.211 5.211 23 N -0.245 5.245 24 C 0.256 3.744 25 O -0.470 6.470 26 C -0.111 4.111 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.352 0.648 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.188 0.812 40 H 0.409 0.591 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.737 -19.032 9.874 26.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.335 5.335 3 C -0.007 4.007 4 C -0.086 4.086 5 N -0.299 5.299 6 C -0.080 4.080 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.345 3.655 19 O -0.385 6.385 20 C -0.120 4.120 21 C -0.083 4.083 22 N -0.054 5.054 23 N -0.097 5.097 24 C 0.070 3.930 25 O -0.276 6.276 26 C -0.141 4.141 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.172 0.828 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.205 0.795 40 H 0.267 0.733 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.256 -19.924 10.443 27.180 hybrid contribution 0.579 1.547 -0.726 1.805 sum -14.677 -18.376 9.717 25.446 Atomic orbital electron populations 1.22263 0.79216 1.04363 1.01883 1.47706 1.07309 1.05952 1.72544 1.21575 0.98576 0.82911 0.97646 1.22259 0.99280 0.90874 0.96167 1.60000 1.28502 1.27511 1.13927 1.21656 1.00295 0.96217 0.89852 1.19768 0.85288 0.87315 0.85070 1.90524 1.59318 1.67262 1.29627 1.41862 1.49945 1.21388 1.06756 1.19709 1.30971 0.97674 0.94565 0.87876 1.25277 0.98154 0.99917 0.94642 1.69616 1.46994 1.40178 0.97498 0.85841 0.79416 0.81093 0.77843 1.20403 1.20917 1.19390 1.17985 0.87016 0.82939 0.77531 1.90871 1.12886 1.86616 1.48107 1.21251 0.94905 0.96854 0.99035 1.24624 1.00658 0.88393 0.94668 1.73172 0.99787 1.19591 1.12880 1.72806 1.05087 1.27358 1.04450 1.20776 0.90040 0.89457 0.92688 1.84833 1.12750 1.88051 1.41961 1.23232 0.94533 0.98342 0.98014 0.91573 0.89431 0.91070 0.88590 0.89083 0.95072 0.90953 0.82832 0.93731 0.89592 0.77451 0.91851 0.79493 0.73261 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 8.88 59.85 0.53 0.78 16 2 N -0.60 -4.63 2.87 -182.58 -0.52 -5.15 16 3 C 0.11 1.09 5.68 -4.04 -0.02 1.07 16 4 C 0.05 0.51 6.01 -3.82 -0.02 0.49 16 5 N -0.67 -10.24 6.12 -115.06 -0.70 -10.95 16 6 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 7 C 0.44 10.28 7.82 -10.98 -0.09 10.20 16 8 O -0.58 -15.68 15.78 5.55 0.09 -15.59 16 9 N -0.56 -14.17 5.29 -10.97 -0.06 -14.23 16 10 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 13 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 14 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.56 5.36 7.43 -12.18 -0.09 5.27 16 19 O -0.51 -6.82 16.49 5.36 0.09 -6.74 16 20 C -0.11 -0.82 5.30 -104.60 -0.55 -1.38 16 21 C 0.08 0.69 10.96 -16.96 -0.19 0.51 16 22 N -0.21 -2.13 11.48 30.79 0.35 -1.78 16 23 N -0.24 -2.41 11.50 30.49 0.35 -2.06 16 24 C 0.26 1.79 7.85 -16.99 -0.13 1.66 16 25 O -0.47 -2.31 13.57 -18.81 -0.26 -2.56 16 26 C -0.11 -0.62 7.72 -38.61 -0.30 -0.92 16 27 H 0.07 0.13 6.89 -51.93 -0.36 -0.23 16 28 H 0.09 0.29 8.03 -51.93 -0.42 -0.13 16 29 H 0.07 0.20 5.83 -51.93 -0.30 -0.11 16 30 H 0.10 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.09 1.01 7.36 -51.93 -0.38 0.63 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.35 5.71 8.43 -39.29 -0.33 5.38 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.19 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.41 -0.21 9.06 45.56 0.41 0.21 16 41 H 0.17 0.49 5.32 -52.49 -0.28 0.21 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -36.30 359.01 -4.71 -41.01 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.02 Total: 9.82 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -1.13 Total: 10.56 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.14 Total: -57.83 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.08 Total: -24.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.30 -4.71 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493586721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.281 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds