Wall clock time and date at job start Fri Apr 10 2020 18:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00068 * 2 1 4 4 C 1.53001 * 109.47009 * 270.00002 * 3 2 1 5 5 N 1.46900 * 109.47028 * 180.02562 * 4 3 2 6 6 C 1.46899 * 111.00026 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46830 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00341 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99877 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00316 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99703 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00319 * 180.02562 * 10 9 7 13 13 N 1.31422 * 119.99757 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00352 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46763 * 90.00037 * 14 12 10 16 16 H 1.48496 * 109.47185 * 210.00170 * 14 12 10 17 17 H 1.48494 * 109.47085 * 330.00726 * 14 12 10 18 18 C 1.34783 * 120.00251 * 179.97438 * 2 1 3 19 19 O 1.21505 * 120.00542 * 184.79174 * 18 2 1 20 20 C 1.48156 * 119.99378 * 4.79178 * 18 2 1 21 21 C 1.39899 * 121.11746 * 142.65707 * 20 18 2 22 22 N 1.31767 * 119.78379 * 180.27802 * 21 20 18 23 23 N 1.28276 * 122.41770 * 359.75103 * 22 21 20 24 24 C 1.32272 * 122.43999 * 359.97438 * 23 22 21 25 25 O 1.35703 * 120.08653 * 180.02562 * 24 23 22 26 26 C 1.39242 * 119.83712 * 359.97438 * 24 23 22 27 27 H 1.08998 * 109.46970 * 264.70793 * 1 2 3 28 28 H 1.09001 * 109.46750 * 24.70665 * 1 2 3 29 29 H 1.08996 * 109.47091 * 144.71120 * 1 2 3 30 30 H 1.08993 * 109.46954 * 30.00507 * 3 2 1 31 31 H 1.09002 * 109.46676 * 150.00028 * 3 2 1 32 32 H 1.09003 * 109.47005 * 299.99811 * 4 3 2 33 33 H 1.08998 * 109.46901 * 59.99912 * 4 3 2 34 34 H 1.00897 * 111.00417 * 56.03487 * 5 4 3 35 35 H 1.08993 * 109.46662 * 299.99494 * 6 5 4 36 36 H 1.08999 * 109.47365 * 59.99614 * 6 5 4 37 37 H 0.97002 * 119.99852 * 0.02562 * 9 7 6 38 38 H 0.96997 * 119.99901 * 180.02562 * 13 12 10 39 39 H 1.07996 * 120.10988 * 0.05409 * 21 20 18 40 40 H 0.96696 * 113.99822 * 269.97588 * 25 24 23 41 41 H 1.07997 * 121.11650 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1876 2.9823 -1.4425 6 6 3.4503 3.4385 -2.8139 7 6 4.2035 4.7431 -2.7737 8 8 4.4935 5.2433 -1.7074 9 7 4.5560 5.3535 -3.9225 10 6 5.2408 6.5406 -3.8859 11 1 5.4982 6.9864 -2.9366 12 6 5.6037 7.1701 -5.0703 13 7 5.2900 6.6278 -6.2255 14 14 6.5374 8.7872 -5.0205 15 1 7.9973 8.5156 -5.0079 16 1 6.1942 9.5940 -6.2190 17 1 6.1630 9.5374 -3.7949 18 6 2.1389 -1.1672 0.0005 19 8 3.3508 -1.1691 0.0884 20 6 1.4020 -2.4480 -0.1061 21 6 1.9180 -3.5200 -0.8421 22 7 1.2378 -4.6455 -0.9239 23 7 0.1047 -4.8079 -0.3449 24 6 -0.4652 -3.8580 0.3780 25 8 -1.6655 -4.0817 0.9704 26 6 0.1699 -2.6283 0.5305 27 1 -0.3633 -0.0948 1.0233 28 1 -0.3633 0.9336 -0.4295 29 1 -0.3633 -0.8388 -0.5937 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5139 32 1 3.0416 0.9507 -1.9563 33 1 1.5001 1.8407 -1.9563 34 1 4.0450 2.9045 -0.9164 35 1 4.0457 2.6907 -3.3377 36 1 2.5046 3.5813 -3.3368 37 1 4.3244 4.9532 -4.7752 38 1 5.5436 7.0670 -7.0523 39 1 2.8692 -3.4242 -1.3446 40 1 -2.4253 -3.8447 0.4213 41 1 -0.2769 -1.8382 1.1157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493586721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:01 Heat of formation + Delta-G solvation = -61.720170 kcal Electronic energy + Delta-G solvation = -25820.056928 eV Core-core repulsion = 21735.612604 eV Total energy + Delta-G solvation = -4084.444324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.61110 -40.93225 -40.15451 -38.66821 -37.62879 -36.45834 -35.81902 -34.56063 -33.27931 -32.59113 -30.97487 -28.30393 -27.93467 -26.41707 -25.79473 -25.17441 -23.34506 -21.48285 -21.03027 -20.01339 -19.86237 -18.96090 -18.22124 -17.97377 -17.92780 -17.43052 -17.03078 -16.84255 -16.51750 -16.32953 -15.90995 -15.45464 -15.21464 -15.07251 -14.90257 -14.79483 -14.28699 -14.07099 -13.86735 -13.53845 -13.35178 -13.30029 -13.07426 -12.95475 -12.76889 -12.55496 -12.42363 -12.12304 -12.11834 -11.76022 -11.51532 -11.39109 -10.94556 -10.59309 -10.40444 -10.02758 -9.91536 -9.44235 -8.47481 -5.96364 -0.87436 -0.41462 1.28367 1.37938 1.42039 1.54645 1.59396 2.03469 2.20948 2.27688 2.29065 2.85120 2.98552 3.13357 3.19599 3.28243 3.52476 3.61242 3.93764 3.98289 4.07138 4.15697 4.22740 4.29029 4.45382 4.48293 4.52244 4.57893 4.63224 4.76334 4.81700 4.85637 4.91781 5.26048 5.40485 5.81718 6.04772 6.05976 6.28004 6.46622 6.58574 6.76427 7.11454 7.39835 7.54648 8.09611 8.69833 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032780 B = 0.001812 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.971582 B =15452.914208 C =15675.584471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.594 5.594 3 C 0.121 3.879 4 C 0.052 3.948 5 N -0.676 5.676 6 C 0.067 3.933 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.573 5.573 10 C -0.334 4.334 11 H 0.080 0.920 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.272 1.272 18 C 0.560 3.440 19 O -0.558 6.558 20 C -0.111 4.111 21 C 0.076 3.924 22 N -0.238 5.238 23 N -0.278 5.278 24 C 0.265 3.735 25 O -0.473 6.473 26 C -0.086 4.086 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.091 0.909 34 H 0.344 0.656 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.191 0.809 40 H 0.432 0.568 41 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.846 -18.883 10.150 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.326 5.326 3 C -0.002 4.002 4 C -0.078 4.078 5 N -0.308 5.308 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.210 5.210 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.214 4.214 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.197 1.197 18 C 0.346 3.654 19 O -0.437 6.437 20 C -0.125 4.125 21 C -0.090 4.090 22 N -0.080 5.080 23 N -0.130 5.130 24 C 0.078 3.922 25 O -0.283 6.283 26 C -0.117 4.117 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.109 0.891 34 H 0.163 0.837 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.207 0.793 40 H 0.296 0.704 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -17.448 -19.802 10.687 28.474 hybrid contribution 1.107 1.473 -0.749 1.989 sum -16.341 -18.329 9.938 26.490 Atomic orbital electron populations 1.22628 0.76387 1.05678 1.04027 1.47754 1.08942 1.04639 1.71237 1.21410 0.98448 0.84078 0.96249 1.22295 0.99191 0.88707 0.97633 1.60017 1.28295 1.29875 1.12613 1.21520 1.00578 0.92976 0.91519 1.20841 0.84199 0.88662 0.83844 1.90492 1.60628 1.68823 1.30936 1.41935 1.50335 1.21167 1.07561 1.19675 1.33108 0.99399 0.94184 0.90236 1.26062 0.98450 1.02860 0.94000 1.69674 1.47192 1.41306 0.97919 0.84911 0.78218 0.77128 0.77987 1.19738 1.19504 1.19695 1.18215 0.86517 0.83819 0.76808 1.90851 1.14995 1.87309 1.50532 1.21066 0.95712 0.95779 0.99948 1.24702 1.00803 0.88471 0.95019 1.73120 1.00424 1.20385 1.14066 1.72685 1.05465 1.28994 1.05848 1.20832 0.90628 0.89164 0.91567 1.84803 1.12881 1.88150 1.42441 1.23488 0.93081 0.98502 0.96591 0.88889 0.88284 0.89745 0.86924 0.91128 0.95970 0.89067 0.83743 0.92074 0.87249 0.76953 0.91282 0.79260 0.70429 0.77981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.19 8.88 127.77 1.13 1.32 16 2 N -0.59 -7.77 2.87 -849.85 -2.44 -10.21 16 3 C 0.12 2.10 5.68 86.38 0.49 2.59 16 4 C 0.05 1.09 6.01 86.30 0.52 1.61 16 5 N -0.68 -20.08 6.12 -517.95 -3.17 -23.26 16 6 C 0.07 2.21 6.17 85.56 0.53 2.74 16 7 C 0.44 20.56 7.82 87.66 0.69 21.24 16 8 O -0.62 -34.15 15.78 -3.06 -0.05 -34.20 16 9 N -0.57 -29.20 5.29 -306.99 -1.62 -30.82 16 10 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 11 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 12 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 13 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 14 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 C 0.56 10.15 7.43 86.88 0.65 10.79 16 19 O -0.56 -15.20 16.49 -3.73 -0.06 -15.27 16 20 C -0.11 -1.57 5.30 -19.85 -0.11 -1.67 16 21 C 0.08 1.30 10.96 85.10 0.93 2.23 16 22 N -0.24 -4.82 11.48 -56.51 -0.65 -5.47 16 23 N -0.28 -5.26 11.50 -170.30 -1.96 -7.22 16 24 C 0.27 3.12 7.85 84.87 0.67 3.78 16 25 O -0.47 -3.24 13.57 -90.23 -1.22 -4.46 16 26 C -0.09 -0.73 7.72 22.90 0.18 -0.55 16 27 H 0.09 -0.11 6.89 -2.39 -0.02 -0.12 16 28 H 0.10 0.21 8.03 -2.39 -0.02 0.19 16 29 H 0.08 0.12 5.83 -2.39 -0.01 0.10 16 30 H 0.11 1.60 8.07 -2.39 -0.02 1.58 16 31 H 0.07 1.55 7.36 -2.39 -0.02 1.54 16 32 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.34 11.20 8.43 -89.70 -0.76 10.44 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 38 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 39 H 0.19 2.90 8.06 -2.91 -0.02 2.87 16 40 H 0.43 -1.89 9.06 -74.06 -0.67 -2.56 16 41 H 0.20 0.23 5.32 -2.91 -0.02 0.21 16 Total: -1.00 -80.88 359.01 -2.95 -83.83 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -1.03 Total: 25.72 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 6.95 Total: 25.71 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -9.56 Total: -126.08 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -1.33 Total: -53.92 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -80.88 -2.95 -83.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493586721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.114 kcal (2) G-P(sol) polarization free energy of solvation -80.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds