Wall clock time and date at job start Fri Apr 10 2020 18:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86802 * 120.00096 * 2 1 4 4 H 1.48501 * 109.47131 * 239.99615 * 3 2 1 5 5 H 1.48494 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46994 * 119.99604 * 3 2 1 7 7 C 1.38956 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99695 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00073 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99809 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47156 * 179.97438 * 12 10 9 14 14 C 1.47479 * 110.99965 * 189.99845 * 13 12 10 15 15 C 1.53517 * 87.99753 * 138.66774 * 14 13 12 16 16 N 1.46494 * 114.16882 * 220.35526 * 15 14 13 17 17 C 1.34785 * 119.99920 * 204.99950 * 16 15 14 18 18 O 1.21280 * 119.99768 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00037 * 180.02562 * 17 16 15 20 20 H 1.08997 * 115.56221 * 325.61520 * 19 17 16 21 21 C 1.53180 * 117.52186 * 111.39038 * 19 17 16 22 22 C 1.52101 * 117.52166 * 179.75850 * 19 17 16 23 23 C 1.53714 * 121.73714 * 3.67787 * 22 19 17 24 24 C 1.54690 * 103.69654 * 143.46823 * 23 22 19 25 25 O 1.44499 * 104.86938 * 23.84178 * 24 23 22 26 26 C 1.44630 * 105.46453 * 320.02350 * 25 24 23 27 27 C 1.47487 * 110.99585 * 285.96811 * 13 12 10 28 28 H 0.97003 * 120.00297 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00012 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47300 * 59.99173 * 12 10 9 31 31 H 1.09004 * 109.46837 * 299.99634 * 12 10 9 32 32 H 1.09002 * 113.47562 * 253.46722 * 14 13 12 33 33 H 1.09003 * 113.47677 * 23.87325 * 14 13 12 34 34 H 1.09000 * 114.16717 * 87.65445 * 15 14 13 35 35 H 0.97002 * 120.00370 * 25.00571 * 16 15 14 36 36 H 1.08997 * 117.52482 * 214.84264 * 21 19 17 37 37 H 1.08997 * 117.51912 * 359.95226 * 21 19 17 38 38 H 1.09004 * 110.57762 * 262.02008 * 23 22 19 39 39 H 1.09001 * 110.58489 * 24.76181 * 23 22 19 40 40 H 1.09004 * 110.36665 * 142.69432 * 24 23 22 41 41 H 1.09004 * 110.35892 * 264.99479 * 24 23 22 42 42 H 1.08999 * 110.42053 * 280.87815 * 26 25 24 43 43 H 1.09004 * 110.42031 * 158.41827 * 26 25 24 44 44 H 1.09004 * 113.47787 * 336.06095 * 27 13 12 45 45 H 1.09001 * 113.47615 * 106.47267 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8630 0.0010 13 7 2.1982 -5.9795 0.0017 14 6 1.5112 -7.2623 -0.2378 15 6 2.6785 -7.6547 -1.1544 16 7 2.2732 -8.3557 -2.3752 17 6 3.1391 -9.1793 -2.9985 18 8 4.2537 -9.3403 -2.5484 19 6 2.7223 -9.9000 -4.2547 20 1 1.6759 -10.2018 -4.2985 21 6 3.3942 -9.4823 -5.5664 22 6 3.7459 -10.8110 -4.9148 23 6 5.1268 -11.0634 -4.2884 24 6 5.4087 -12.5500 -4.6099 25 8 4.5993 -12.8380 -5.7717 26 6 3.3454 -12.1530 -5.5476 27 6 2.8305 -6.1350 -1.3216 28 1 -0.4851 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6179 -4.9209 -0.8896 31 1 0.6160 -4.9205 0.8903 32 1 1.4306 -7.8848 0.6533 33 1 0.5627 -7.1553 -0.7643 34 1 3.5108 -8.1323 -0.6374 35 1 1.3816 -8.2271 -2.7351 36 1 2.7899 -9.5103 -6.4731 37 1 4.1368 -8.6858 -5.5205 38 1 5.8791 -10.4225 -4.7484 39 1 5.0942 -10.9015 -3.2109 40 1 6.4647 -12.6952 -4.8379 41 1 5.1102 -13.1821 -3.7736 42 1 2.7172 -12.7236 -4.8636 43 1 2.8278 -11.9882 -6.4927 44 1 2.2347 -5.7273 -2.1382 45 1 3.8678 -5.8012 -1.3491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494477840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:13 Heat of formation + Delta-G solvation = -41.780846 kcal Electronic energy + Delta-G solvation = -26675.342584 eV Core-core repulsion = 22695.303237 eV Total energy + Delta-G solvation = -3980.039347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.03150 -40.23134 -38.83393 -37.72466 -36.06221 -34.28628 -33.84420 -31.31891 -30.61776 -29.89200 -27.86757 -25.95075 -25.81977 -24.61484 -23.12610 -23.01500 -20.86239 -20.45030 -19.54984 -19.26513 -17.94339 -17.40450 -16.72512 -16.35384 -16.19960 -16.10505 -15.53673 -15.37568 -15.17544 -14.70491 -14.60533 -14.15912 -13.91030 -13.84108 -13.34814 -13.15446 -13.01633 -12.79508 -12.57769 -12.56741 -12.18909 -11.81499 -11.69591 -11.55686 -11.28671 -11.23250 -11.07522 -10.84990 -10.65235 -10.46153 -10.43025 -10.23993 -10.09951 -9.71501 -9.52598 -9.17852 -8.83601 -8.31073 -7.99756 -6.44653 -3.85510 2.18257 2.76446 3.18204 3.24004 3.27747 3.28782 3.64328 3.85158 3.95594 4.09899 4.19157 4.25323 4.33309 4.41977 4.55608 4.67489 4.80616 4.87497 4.92642 5.05034 5.08657 5.15521 5.21797 5.24520 5.28164 5.36409 5.37760 5.49886 5.53424 5.60174 5.60712 5.70682 5.76891 5.85205 6.02446 6.13830 6.21091 6.31318 6.45716 6.50601 7.08314 7.25814 7.52328 7.99624 8.02219 8.57985 9.14885 9.50297 10.02133 10.72976 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.001968 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.719866 B =14226.780075 C =14501.531075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.577 6.577 12 C 0.012 3.988 13 N -0.438 5.438 14 C -0.014 4.014 15 C 0.115 3.885 16 N -0.713 5.713 17 C 0.546 3.454 18 O -0.530 6.530 19 C -0.177 4.177 20 H 0.127 0.873 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.130 4.130 24 C 0.044 3.956 25 O -0.375 6.375 26 C 0.083 3.917 27 C 0.001 3.999 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.401 0.599 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.875 -23.048 -10.032 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.461 6.461 12 C -0.120 4.120 13 N -0.160 5.160 14 C -0.144 4.144 15 C 0.010 3.990 16 N -0.364 5.364 17 C 0.332 3.668 18 O -0.407 6.407 19 C -0.198 4.198 20 H 0.145 0.855 21 C -0.168 4.168 22 C -0.130 4.130 23 C -0.167 4.167 24 C -0.033 4.033 25 O -0.294 6.294 26 C 0.006 3.994 27 C -0.129 4.129 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.147 0.853 35 H 0.235 0.765 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.070 -22.979 -9.255 24.796 hybrid contribution -1.603 1.267 -0.620 2.136 sum -0.533 -21.712 -9.875 23.858 Atomic orbital electron populations 1.69597 1.05934 1.28292 1.50528 1.25264 0.95652 0.99739 0.97278 0.85910 0.78764 0.80392 0.79119 1.19910 1.20958 1.19841 1.19652 0.93347 0.82193 1.47715 0.87970 1.41852 1.09145 1.04571 1.64482 1.19641 0.88384 0.84462 0.84765 1.90537 1.13601 1.86950 1.55003 1.22485 0.94924 0.92575 1.02046 1.68801 1.19194 0.99908 1.28134 1.24328 0.96366 0.94065 0.99623 1.22791 0.98888 0.92357 0.84977 1.45944 1.17000 1.46054 1.27359 1.19653 0.84723 0.78411 0.83973 1.90617 1.20423 1.63350 1.66326 1.22167 0.99523 1.04738 0.93413 0.85539 1.22991 1.02277 0.97624 0.93905 1.22148 0.96468 0.92850 1.01498 1.22736 0.93503 0.95715 1.04720 1.23541 0.96280 0.95275 0.88179 1.89155 1.26390 1.72553 1.41299 1.22789 0.87291 0.89009 1.00327 1.24246 1.03233 0.93869 0.91544 0.91806 0.77512 0.92691 0.88890 0.88939 0.91134 0.85312 0.76453 0.87284 0.87664 0.90541 0.86575 0.89058 0.92238 0.91598 0.88808 0.91392 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.21 5.29 -10.96 -0.06 -14.26 16 10 C 0.44 10.42 7.62 -10.98 -0.08 10.34 16 11 O -0.58 -15.78 15.34 5.55 0.09 -15.70 16 12 C 0.01 0.20 5.31 -4.98 -0.03 0.18 16 13 N -0.44 -7.09 6.06 -245.87 -1.49 -8.59 16 14 C -0.01 -0.16 7.47 -7.54 -0.06 -0.21 16 15 C 0.12 1.36 4.60 -67.61 -0.31 1.05 16 16 N -0.71 -6.59 5.39 -53.44 -0.29 -6.88 16 17 C 0.55 5.70 7.61 -10.98 -0.08 5.62 16 18 O -0.53 -7.36 12.93 5.56 0.07 -7.29 16 19 C -0.18 -1.32 6.08 -92.14 -0.56 -1.88 16 20 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 21 C -0.13 -0.94 10.00 -27.09 -0.27 -1.22 16 22 C -0.13 -1.06 2.50 -154.69 -0.39 -1.44 16 23 C -0.13 -1.24 5.98 -25.47 -0.15 -1.39 16 24 C 0.04 0.37 7.65 38.05 0.29 0.66 16 25 O -0.38 -3.73 11.65 -35.23 -0.41 -4.14 16 26 C 0.08 0.61 7.44 37.51 0.28 0.89 16 27 C 0.00 0.02 6.53 -7.47 -0.05 -0.03 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 29 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 30 H 0.06 0.82 7.56 -51.93 -0.39 0.43 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.65 7.76 -51.93 -0.40 0.25 16 34 H 0.13 1.73 7.46 -51.93 -0.39 1.34 16 35 H 0.40 2.59 8.75 -40.82 -0.36 2.24 16 36 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.12 1.32 5.44 -51.93 -0.28 1.03 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 44 H 0.07 0.99 7.70 -51.93 -0.40 0.59 16 45 H 0.10 1.74 8.13 -51.93 -0.42 1.31 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -33.90 372.13 -9.14 -43.04 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.70 Total: 11.24 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.65 Total: 4.59 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -1.11 Total: -53.35 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.25 Total: -27.13 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.90 -9.14 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494477840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.254 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds