Wall clock time and date at job start Fri Apr 10 2020 18:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86802 * 120.00096 * 2 1 4 4 H 1.48501 * 109.47131 * 239.99615 * 3 2 1 5 5 H 1.48494 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46994 * 119.99604 * 3 2 1 7 7 C 1.38956 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99939 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99695 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00073 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99809 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47156 * 179.97438 * 12 10 9 14 14 C 1.47479 * 110.99965 * 189.99845 * 13 12 10 15 15 C 1.53517 * 87.99753 * 138.66774 * 14 13 12 16 16 N 1.46494 * 114.16882 * 220.35526 * 15 14 13 17 17 C 1.34785 * 119.99920 * 204.99950 * 16 15 14 18 18 O 1.21280 * 119.99768 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00037 * 180.02562 * 17 16 15 20 20 H 1.08997 * 115.56221 * 325.61520 * 19 17 16 21 21 C 1.53180 * 117.52186 * 111.39038 * 19 17 16 22 22 C 1.52101 * 117.52166 * 179.75850 * 19 17 16 23 23 C 1.53714 * 121.73714 * 3.67787 * 22 19 17 24 24 C 1.54690 * 103.69654 * 143.46823 * 23 22 19 25 25 O 1.44499 * 104.86938 * 23.84178 * 24 23 22 26 26 C 1.44630 * 105.46453 * 320.02350 * 25 24 23 27 27 C 1.47487 * 110.99585 * 285.96811 * 13 12 10 28 28 H 0.97003 * 120.00297 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00012 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47300 * 59.99173 * 12 10 9 31 31 H 1.09004 * 109.46837 * 299.99634 * 12 10 9 32 32 H 1.09002 * 113.47562 * 253.46722 * 14 13 12 33 33 H 1.09003 * 113.47677 * 23.87325 * 14 13 12 34 34 H 1.09000 * 114.16717 * 87.65445 * 15 14 13 35 35 H 0.97002 * 120.00370 * 25.00571 * 16 15 14 36 36 H 1.08997 * 117.52482 * 214.84264 * 21 19 17 37 37 H 1.08997 * 117.51912 * 359.95226 * 21 19 17 38 38 H 1.09004 * 110.57762 * 262.02008 * 23 22 19 39 39 H 1.09001 * 110.58489 * 24.76181 * 23 22 19 40 40 H 1.09004 * 110.36665 * 142.69432 * 24 23 22 41 41 H 1.09004 * 110.35892 * 264.99479 * 24 23 22 42 42 H 1.08999 * 110.42053 * 280.87815 * 26 25 24 43 43 H 1.09004 * 110.42031 * 158.41827 * 26 25 24 44 44 H 1.09004 * 113.47787 * 336.06095 * 27 13 12 45 45 H 1.09001 * 113.47615 * 106.47267 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8630 0.0010 13 7 2.1982 -5.9795 0.0017 14 6 1.5112 -7.2623 -0.2378 15 6 2.6785 -7.6547 -1.1544 16 7 2.2732 -8.3557 -2.3752 17 6 3.1391 -9.1793 -2.9985 18 8 4.2537 -9.3403 -2.5484 19 6 2.7223 -9.9000 -4.2547 20 1 1.6759 -10.2018 -4.2985 21 6 3.3942 -9.4823 -5.5664 22 6 3.7459 -10.8110 -4.9148 23 6 5.1268 -11.0634 -4.2884 24 6 5.4087 -12.5500 -4.6099 25 8 4.5993 -12.8380 -5.7717 26 6 3.3454 -12.1530 -5.5476 27 6 2.8305 -6.1350 -1.3216 28 1 -0.4851 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6179 -4.9209 -0.8896 31 1 0.6160 -4.9205 0.8903 32 1 1.4306 -7.8848 0.6533 33 1 0.5627 -7.1553 -0.7643 34 1 3.5108 -8.1323 -0.6374 35 1 1.3816 -8.2271 -2.7351 36 1 2.7899 -9.5103 -6.4731 37 1 4.1368 -8.6858 -5.5205 38 1 5.8791 -10.4225 -4.7484 39 1 5.0942 -10.9015 -3.2109 40 1 6.4647 -12.6952 -4.8379 41 1 5.1102 -13.1821 -3.7736 42 1 2.7172 -12.7236 -4.8636 43 1 2.8278 -11.9882 -6.4927 44 1 2.2347 -5.7273 -2.1382 45 1 3.8678 -5.8012 -1.3491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494477840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:12 Heat of formation + Delta-G solvation = -70.223529 kcal Electronic energy + Delta-G solvation = -26676.575952 eV Core-core repulsion = 22695.303237 eV Total energy + Delta-G solvation = -3981.272714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.91836 -41.20442 -39.90779 -39.30088 -36.75109 -35.99737 -35.12360 -33.32279 -31.47738 -31.04820 -28.52566 -27.42717 -26.93708 -25.89182 -24.26576 -23.67645 -21.67035 -21.42017 -21.00334 -20.30538 -19.92379 -18.18572 -17.91561 -17.64017 -17.04240 -16.87711 -16.60936 -16.55819 -16.22647 -16.03464 -15.87908 -15.64864 -15.23517 -14.94004 -14.58634 -14.27549 -13.85991 -13.71695 -13.62123 -13.52846 -13.44862 -13.18329 -13.13547 -12.88875 -12.46861 -12.37255 -12.29456 -12.14399 -11.96235 -11.81740 -11.52134 -11.47331 -11.09847 -10.76184 -10.51384 -10.37579 -10.09315 -10.03976 -9.83614 -8.48923 -5.97566 1.37642 1.39606 1.39964 1.50560 1.95373 2.02707 2.27646 2.64977 2.89396 3.04608 3.16975 3.22176 3.41371 3.50620 3.62574 3.74058 3.79395 3.91660 4.01741 4.11105 4.23782 4.25471 4.33741 4.40791 4.45428 4.51187 4.52485 4.68730 4.69034 4.78258 4.79762 4.81520 4.86206 4.92367 5.00140 5.04400 5.23192 5.29165 5.38611 5.47795 5.81504 5.85375 6.03784 6.51883 6.58099 7.10599 7.23145 7.53386 8.10005 8.68061 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.001968 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.719866 B =14226.780075 C =14501.531075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.075 0.925 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.026 3.974 13 N -0.473 5.473 14 C 0.004 3.996 15 C 0.132 3.868 16 N -0.698 5.698 17 C 0.538 3.462 18 O -0.571 6.571 19 C -0.166 4.166 20 H 0.164 0.836 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.132 4.132 24 C 0.046 3.954 25 O -0.396 6.396 26 C 0.083 3.917 27 C -0.004 4.004 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.419 0.581 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.075 0.925 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.534 -24.078 -10.999 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.093 0.907 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.509 6.509 12 C -0.106 4.106 13 N -0.196 5.196 14 C -0.125 4.125 15 C 0.025 3.975 16 N -0.350 5.350 17 C 0.326 3.674 18 O -0.451 6.451 19 C -0.187 4.187 20 H 0.182 0.818 21 C -0.163 4.163 22 C -0.142 4.142 23 C -0.169 4.169 24 C -0.031 4.031 25 O -0.315 6.315 26 C 0.007 3.993 27 C -0.134 4.134 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.257 0.743 36 H 0.156 0.844 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.094 0.906 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.654 -24.023 -10.234 26.165 hybrid contribution -0.717 1.564 -0.307 1.747 sum -2.371 -22.460 -10.541 24.923 Atomic orbital electron populations 1.69648 1.06683 1.29401 1.50093 1.26009 0.96587 1.02291 0.96242 0.85018 0.77820 0.76800 0.78875 1.19799 1.19239 1.19894 1.19585 0.92589 0.84117 1.50188 0.90667 1.41912 1.09320 1.04611 1.65113 1.20825 0.88258 0.86122 0.82371 1.90511 1.16024 1.87957 1.56408 1.22385 0.94519 0.89193 1.04507 1.68760 1.20546 1.01548 1.28741 1.24339 0.96804 0.90997 1.00315 1.22357 0.99026 0.90059 0.86034 1.45761 1.17721 1.45153 1.26366 1.20280 0.84157 0.78253 0.84671 1.90623 1.22282 1.64641 1.67554 1.22227 1.01068 1.03764 0.91604 0.81822 1.23080 1.02031 0.96317 0.94870 1.22201 0.95851 0.93882 1.02218 1.22638 0.94573 0.96346 1.03376 1.23555 0.96715 0.94552 0.88249 1.89126 1.27589 1.73037 1.41789 1.22964 0.86531 0.88173 1.01628 1.24230 1.00912 0.96535 0.91747 0.91214 0.76850 0.89551 0.86691 0.87329 0.87733 0.87339 0.74283 0.84402 0.89572 0.91970 0.88626 0.88469 0.91512 0.90362 0.86768 0.90641 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.94 13.05 21.66 0.28 -48.65 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.34 -19.13 9.68 84.04 0.81 -18.31 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.57 -29.20 5.29 -306.98 -1.62 -30.82 16 10 C 0.44 20.84 7.62 87.66 0.67 21.51 16 11 O -0.62 -35.42 15.34 -3.07 -0.05 -35.47 16 12 C 0.03 0.84 5.31 85.56 0.45 1.29 16 13 N -0.47 -14.83 6.06 -931.80 -5.65 -20.48 16 14 C 0.00 0.08 7.47 83.58 0.62 0.71 16 15 C 0.13 2.99 4.60 45.47 0.21 3.20 16 16 N -0.70 -11.44 5.39 -441.38 -2.38 -13.82 16 17 C 0.54 10.67 7.61 87.66 0.67 11.34 16 18 O -0.57 -16.33 12.93 -3.03 -0.04 -16.37 16 19 C -0.17 -2.05 6.08 -11.78 -0.07 -2.12 16 20 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 21 C -0.13 -1.57 10.00 30.36 0.30 -1.27 16 22 C -0.14 -2.09 2.50 -52.30 -0.13 -2.23 16 23 C -0.13 -2.59 5.98 31.41 0.19 -2.40 16 24 C 0.05 0.77 7.65 72.56 0.56 1.32 16 25 O -0.40 -7.39 11.65 -148.98 -1.74 -9.13 16 26 C 0.08 1.04 7.44 72.21 0.54 1.57 16 27 C 0.00 -0.12 6.53 83.62 0.55 0.43 16 28 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 30 H 0.09 2.29 7.56 -2.39 -0.02 2.28 16 31 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.10 1.37 7.76 -2.39 -0.02 1.36 16 34 H 0.11 2.98 7.46 -2.39 -0.02 2.96 16 35 H 0.42 3.84 8.75 -92.71 -0.81 3.03 16 36 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.10 2.30 5.44 -2.39 -0.01 2.29 16 40 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.11 0.93 8.12 -2.39 -0.02 0.91 16 44 H 0.08 2.15 7.70 -2.39 -0.02 2.13 16 45 H 0.05 2.04 8.13 -2.39 -0.02 2.02 16 Total: -1.00 -77.64 372.13 -3.85 -81.49 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -0.51 Total: 33.30 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 5.83 Total: 14.92 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -9.37 Total: -113.77 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -1.82 Total: -60.97 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -77.64 -3.85 -81.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494477840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.264 kcal (2) G-P(sol) polarization free energy of solvation -77.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds