Wall clock time and date at job start Fri Apr 10 2020 18:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48507 * 109.46951 * 269.99770 * 3 2 1 5 5 H 1.48497 * 109.47013 * 29.99762 * 3 2 1 6 6 H 1.48497 * 109.47221 * 149.99852 * 3 2 1 7 7 C 1.38810 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00698 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99907 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00012 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.53507 * 307.60908 * 11 10 9 13 13 C 1.55011 * 110.52588 * 70.26823 * 11 10 9 14 14 C 1.54888 * 102.75216 * 156.61429 * 13 11 10 15 15 C 1.54264 * 104.19920 * 322.04721 * 14 13 11 16 16 C 1.53876 * 106.59632 * 23.61048 * 15 14 13 17 17 H 1.09000 * 110.03368 * 119.33365 * 16 15 14 18 18 N 1.46498 * 110.03193 * 240.71523 * 16 15 14 19 19 C 1.34784 * 119.99885 * 272.90739 * 18 16 15 20 20 O 1.21282 * 119.99863 * 0.02562 * 19 18 16 21 21 C 1.50695 * 119.99799 * 179.97438 * 19 18 16 22 22 N 1.46500 * 109.47301 * 179.97438 * 21 19 18 23 23 C 1.33878 * 122.76614 * 269.98283 * 22 21 19 24 24 O 1.21230 * 125.39396 * 0.03273 * 23 22 21 25 25 C 1.51308 * 109.20638 * 180.02562 * 23 22 21 26 26 C 1.54226 * 103.55871 * 359.97438 * 25 23 22 27 27 C 1.33881 * 122.75885 * 89.99546 * 22 21 19 28 28 O 1.21227 * 125.39884 * 0.02562 * 27 22 21 29 29 H 0.96996 * 119.99904 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99977 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47507 * 59.99629 * 10 9 7 32 32 H 1.09001 * 109.46993 * 299.99120 * 10 9 7 33 33 H 1.09004 * 110.76014 * 38.29457 * 13 11 10 34 34 H 1.08992 * 110.90606 * 275.00231 * 13 11 10 35 35 H 1.09000 * 110.48587 * 203.36947 * 14 13 11 36 36 H 1.09004 * 110.59932 * 80.78354 * 14 13 11 37 37 H 1.08994 * 110.03352 * 264.32764 * 15 14 13 38 38 H 1.08996 * 110.07365 * 142.91626 * 15 14 13 39 39 H 0.96999 * 120.00444 * 92.91071 * 18 16 15 40 40 H 1.09001 * 109.47290 * 60.00449 * 21 19 18 41 41 H 1.09002 * 109.47412 * 300.00121 * 21 19 18 42 42 H 1.09002 * 110.60370 * 241.47710 * 25 23 22 43 43 H 1.09000 * 110.60578 * 118.52059 * 25 23 22 44 44 H 1.08998 * 110.60499 * 118.52002 * 26 25 23 45 45 H 1.08999 * 110.60759 * 241.48243 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1913 0.0011 12 1 5.8785 -1.5090 -0.8076 13 6 6.0612 -1.6102 1.3675 14 6 7.5691 -1.9610 1.4137 15 6 7.6516 -3.3617 0.7727 16 6 6.4102 -3.5080 -0.1248 17 1 6.7141 -3.6633 -1.1600 18 7 5.5910 -4.6335 0.3315 19 6 5.8456 -5.8784 -0.1181 20 8 6.7533 -6.0668 -0.9001 21 6 5.0033 -7.0362 0.3517 22 7 5.4769 -8.2717 -0.2771 23 6 5.0032 -8.7168 -1.4475 24 8 4.1501 -8.1702 -2.1132 25 6 5.7015 -10.0098 -1.8078 26 6 6.6716 -10.2370 -0.6306 27 6 6.4191 -9.0487 0.2715 28 8 6.9805 -8.8346 1.3244 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 3.8491 -3.0424 -0.8891 32 1 3.8485 -3.0426 0.8909 33 1 5.5268 -2.0936 2.1854 34 1 5.9147 -0.5305 1.3972 35 1 7.9222 -1.9918 2.4445 36 1 8.1481 -1.2416 0.8345 37 1 7.6444 -4.1280 1.5477 38 1 8.5578 -3.4459 0.1730 39 1 4.8652 -4.4830 0.9572 40 1 3.9629 -6.8643 0.0756 41 1 5.0815 -7.1264 1.4352 42 1 6.2517 -9.9011 -2.7425 43 1 4.9836 -10.8271 -1.8770 44 1 6.4364 -11.1674 -0.1138 45 1 7.7042 -10.2415 -0.9798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496920377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:29 Heat of formation + Delta-G solvation = -85.677093 kcal Electronic energy + Delta-G solvation = -27864.428550 eV Core-core repulsion = 23882.485719 eV Total energy + Delta-G solvation = -3981.942831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.22754 -40.07174 -38.82729 -38.06950 -36.08100 -34.61434 -33.84321 -33.53035 -31.59815 -29.22960 -28.90100 -26.99277 -26.52200 -24.65942 -22.70550 -22.07439 -21.64459 -20.44174 -19.75583 -19.43941 -18.11174 -17.76179 -17.43263 -16.77655 -16.73886 -15.85702 -15.28005 -15.18727 -14.90293 -14.53031 -14.51083 -14.48349 -14.22609 -14.09950 -13.92713 -13.52003 -13.27237 -13.14238 -12.74988 -12.63221 -12.35161 -11.82413 -11.77351 -11.56449 -11.04374 -11.01545 -10.97703 -10.92361 -10.69189 -10.54778 -10.48137 -10.42988 -10.34493 -10.12162 -9.69500 -9.61721 -9.08481 -8.92671 -7.26911 -5.79538 -3.15483 1.23987 2.01252 2.40840 2.47566 3.18271 3.34960 3.37984 3.43442 3.71149 3.85031 4.04511 4.40336 4.47308 4.56640 4.63039 4.67161 4.76279 4.91812 4.93360 5.03483 5.06091 5.18446 5.22357 5.27303 5.42423 5.54030 5.54971 5.62788 5.71086 5.76286 5.82607 5.95442 5.97933 6.14917 6.32660 6.35708 6.46735 6.51944 6.59555 6.65365 7.00823 7.36141 7.48847 7.95740 8.08592 8.39298 9.18040 9.90345 10.09904 11.38797 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.003115 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.783713 B = 8987.984946 C =10252.444607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.753 5.753 10 C 0.168 3.832 11 C -0.111 4.111 12 H 0.088 0.912 13 C -0.116 4.116 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.151 3.849 17 H 0.089 0.911 18 N -0.712 5.712 19 C 0.505 3.495 20 O -0.538 6.538 21 C 0.075 3.925 22 N -0.558 5.558 23 C 0.529 3.471 24 O -0.473 6.473 25 C -0.154 4.154 26 C -0.154 4.154 27 C 0.532 3.468 28 O -0.482 6.482 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.407 0.593 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.453 -19.905 1.154 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.398 5.398 10 C 0.040 3.960 11 C -0.131 4.131 12 H 0.106 0.894 13 C -0.153 4.153 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.046 3.954 17 H 0.108 0.892 18 N -0.366 5.366 19 C 0.289 3.711 20 O -0.415 6.415 21 C -0.050 4.050 22 N -0.301 5.301 23 C 0.318 3.682 24 O -0.344 6.344 25 C -0.193 4.193 26 C -0.193 4.193 27 C 0.321 3.679 28 O -0.353 6.353 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.244 0.756 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.684 -19.691 0.807 25.821 hybrid contribution 0.126 1.491 0.318 1.530 sum 16.810 -18.200 1.125 24.801 Atomic orbital electron populations 1.69702 1.05120 1.25866 1.57428 1.24673 0.95231 0.97231 1.01940 0.86544 0.79197 0.84954 0.77799 1.21082 1.21737 1.20284 1.19045 0.80588 0.94738 1.43194 0.89246 1.42680 1.04013 1.02091 1.91051 1.20564 0.87682 0.89502 0.98238 1.22556 0.96479 0.95257 0.98776 0.89381 1.22566 0.94569 1.01318 0.96866 1.22379 0.97179 0.96240 1.00447 1.22565 0.97686 0.97667 0.99037 1.21605 0.90096 0.84842 0.98890 0.89243 1.46165 1.36082 1.06391 1.47924 1.20628 0.84726 0.84438 0.81296 1.90692 1.31587 1.84586 1.34633 1.21614 1.00420 0.82331 1.00592 1.46307 1.38073 1.22745 1.22953 1.20844 0.81320 0.86823 0.79260 1.90830 1.29434 1.61834 1.52272 1.22450 0.99735 0.96281 1.00878 1.22448 1.03159 0.98125 0.95618 1.20821 0.77103 0.84400 0.85587 1.90782 1.48453 1.74334 1.21772 0.93027 0.80592 0.95271 0.95916 0.91084 0.91192 0.91753 0.91652 0.91394 0.91422 0.75555 0.85448 0.85776 0.85983 0.86026 0.86076 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.94 27.74 -169.99 -4.71 17.23 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 7 C -0.25 -6.87 10.47 -15.06 -0.16 -7.03 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.39 5.30 -59.91 -0.32 -17.70 16 10 C 0.17 3.06 4.73 -4.04 -0.02 3.04 16 11 C -0.11 -1.63 2.85 -88.89 -0.25 -1.88 16 12 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.12 -1.55 6.20 -24.67 -0.15 -1.70 16 14 C -0.12 -1.40 6.83 -25.07 -0.17 -1.57 16 15 C -0.13 -1.56 6.59 -25.61 -0.17 -1.72 16 16 C 0.15 2.01 3.10 -66.81 -0.21 1.80 16 17 H 0.09 1.32 7.59 -51.93 -0.39 0.92 16 18 N -0.71 -9.01 4.36 -52.72 -0.23 -9.24 16 19 C 0.50 6.86 7.89 -10.98 -0.09 6.77 16 20 O -0.54 -9.00 16.10 5.56 0.09 -8.91 16 21 C 0.08 0.80 6.03 -5.20 -0.03 0.77 16 22 N -0.56 -5.84 2.04 -116.63 -0.24 -6.08 16 23 C 0.53 5.45 8.08 -11.09 -0.09 5.36 16 24 O -0.47 -6.77 17.48 5.60 0.10 -6.67 16 25 C -0.15 -0.76 7.03 -26.94 -0.19 -0.95 16 26 C -0.15 -0.71 7.03 -26.94 -0.19 -0.90 16 27 C 0.53 5.15 8.08 -11.08 -0.09 5.06 16 28 O -0.48 -6.22 17.48 5.60 0.10 -6.12 16 29 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 30 H 0.36 8.17 5.50 -40.82 -0.22 7.94 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.40 6.41 -51.93 -0.33 0.07 16 33 H 0.07 0.96 7.97 -51.93 -0.41 0.55 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.41 4.64 6.53 -40.82 -0.27 4.38 16 40 H 0.13 1.24 7.83 -51.93 -0.41 0.84 16 41 H 0.12 1.07 7.83 -51.93 -0.41 0.67 16 42 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.12 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -37.72 370.95 -7.43 -45.15 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.67 Total: 8.12 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -1.90 Total: 7.09 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.01 Total: -61.48 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.29 Total: -21.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.72 -7.43 -45.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496920377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.531 kcal (2) G-P(sol) polarization free energy of solvation -37.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds