Wall clock time and date at job start Fri Apr 10 2020 18:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48507 * 109.46951 * 269.99770 * 3 2 1 5 5 H 1.48497 * 109.47013 * 29.99762 * 3 2 1 6 6 H 1.48497 * 109.47221 * 149.99852 * 3 2 1 7 7 C 1.38810 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00698 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99907 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00012 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.53507 * 307.60908 * 11 10 9 13 13 C 1.55011 * 110.52588 * 70.26823 * 11 10 9 14 14 C 1.54888 * 102.75216 * 156.61429 * 13 11 10 15 15 C 1.54264 * 104.19920 * 322.04721 * 14 13 11 16 16 C 1.53876 * 106.59632 * 23.61048 * 15 14 13 17 17 H 1.09000 * 110.03368 * 119.33365 * 16 15 14 18 18 N 1.46498 * 110.03193 * 240.71523 * 16 15 14 19 19 C 1.34784 * 119.99885 * 272.90739 * 18 16 15 20 20 O 1.21282 * 119.99863 * 0.02562 * 19 18 16 21 21 C 1.50695 * 119.99799 * 179.97438 * 19 18 16 22 22 N 1.46500 * 109.47301 * 179.97438 * 21 19 18 23 23 C 1.33878 * 122.76614 * 269.98283 * 22 21 19 24 24 O 1.21230 * 125.39396 * 0.03273 * 23 22 21 25 25 C 1.51308 * 109.20638 * 180.02562 * 23 22 21 26 26 C 1.54226 * 103.55871 * 359.97438 * 25 23 22 27 27 C 1.33881 * 122.75885 * 89.99546 * 22 21 19 28 28 O 1.21227 * 125.39884 * 0.02562 * 27 22 21 29 29 H 0.96996 * 119.99904 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99977 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47507 * 59.99629 * 10 9 7 32 32 H 1.09001 * 109.46993 * 299.99120 * 10 9 7 33 33 H 1.09004 * 110.76014 * 38.29457 * 13 11 10 34 34 H 1.08992 * 110.90606 * 275.00231 * 13 11 10 35 35 H 1.09000 * 110.48587 * 203.36947 * 14 13 11 36 36 H 1.09004 * 110.59932 * 80.78354 * 14 13 11 37 37 H 1.08994 * 110.03352 * 264.32764 * 15 14 13 38 38 H 1.08996 * 110.07365 * 142.91626 * 15 14 13 39 39 H 0.96999 * 120.00444 * 92.91071 * 18 16 15 40 40 H 1.09001 * 109.47290 * 60.00449 * 21 19 18 41 41 H 1.09002 * 109.47412 * 300.00121 * 21 19 18 42 42 H 1.09002 * 110.60370 * 241.47710 * 25 23 22 43 43 H 1.09000 * 110.60578 * 118.52059 * 25 23 22 44 44 H 1.08998 * 110.60499 * 118.52002 * 26 25 23 45 45 H 1.08999 * 110.60759 * 241.48243 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1913 0.0011 12 1 5.8785 -1.5090 -0.8076 13 6 6.0612 -1.6102 1.3675 14 6 7.5691 -1.9610 1.4137 15 6 7.6516 -3.3617 0.7727 16 6 6.4102 -3.5080 -0.1248 17 1 6.7141 -3.6633 -1.1600 18 7 5.5910 -4.6335 0.3315 19 6 5.8456 -5.8784 -0.1181 20 8 6.7533 -6.0668 -0.9001 21 6 5.0033 -7.0362 0.3517 22 7 5.4769 -8.2717 -0.2771 23 6 5.0032 -8.7168 -1.4475 24 8 4.1501 -8.1702 -2.1132 25 6 5.7015 -10.0098 -1.8078 26 6 6.6716 -10.2370 -0.6306 27 6 6.4191 -9.0487 0.2715 28 8 6.9805 -8.8346 1.3244 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 3.8491 -3.0424 -0.8891 32 1 3.8485 -3.0426 0.8909 33 1 5.5268 -2.0936 2.1854 34 1 5.9147 -0.5305 1.3972 35 1 7.9222 -1.9918 2.4445 36 1 8.1481 -1.2416 0.8345 37 1 7.6444 -4.1280 1.5477 38 1 8.5578 -3.4459 0.1730 39 1 4.8652 -4.4830 0.9572 40 1 3.9629 -6.8643 0.0756 41 1 5.0815 -7.1264 1.4352 42 1 6.2517 -9.9011 -2.7425 43 1 4.9836 -10.8271 -1.8770 44 1 6.4364 -11.1674 -0.1138 45 1 7.7042 -10.2415 -0.9798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496920377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:29 Heat of formation + Delta-G solvation = -113.503301 kcal Electronic energy + Delta-G solvation = -27865.635185 eV Core-core repulsion = 23882.485719 eV Total energy + Delta-G solvation = -3983.149466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.99094 -41.17536 -39.68394 -39.23571 -36.93918 -36.43382 -34.79659 -34.30871 -33.60232 -30.67061 -29.90456 -27.95622 -27.12481 -26.31687 -23.86069 -23.34335 -22.68045 -21.47414 -20.81695 -20.55562 -19.62438 -18.98560 -18.42028 -17.60325 -17.54317 -16.94188 -16.62962 -16.37651 -16.08899 -15.87916 -15.58486 -15.41641 -15.30328 -15.02521 -14.93693 -14.77395 -14.59409 -14.34918 -13.84111 -13.59494 -13.53303 -13.41751 -12.92788 -12.72820 -12.32377 -12.11184 -12.09663 -12.02894 -11.87138 -11.82677 -11.74589 -11.66338 -11.62821 -11.50315 -11.13751 -10.97705 -10.71484 -10.19265 -9.32064 -8.04059 -5.38054 0.48748 1.25240 1.36879 1.39233 1.40836 1.48112 1.68059 2.20364 2.47491 3.19808 3.24606 3.25432 3.29769 3.58341 3.60500 3.63114 3.74291 3.94040 3.96969 4.08015 4.19504 4.24075 4.31120 4.41398 4.47430 4.49289 4.57814 4.72551 4.75567 4.78915 4.90332 4.91821 4.97314 5.05332 5.16185 5.19237 5.28653 5.42542 5.47570 5.73640 5.73793 6.19476 6.27870 6.32414 6.68502 7.01229 7.06382 7.81563 8.01268 9.17416 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.003115 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.783713 B = 8987.984946 C =10252.444607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.955 3.045 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.246 1.246 7 C -0.236 4.236 8 H 0.056 0.944 9 N -0.754 5.754 10 C 0.167 3.833 11 C -0.103 4.103 12 H 0.089 0.911 13 C -0.115 4.115 14 C -0.113 4.113 15 C -0.123 4.123 16 C 0.154 3.846 17 H 0.074 0.926 18 N -0.708 5.708 19 C 0.501 3.499 20 O -0.572 6.572 21 C 0.071 3.929 22 N -0.566 5.566 23 C 0.518 3.482 24 O -0.525 6.525 25 C -0.139 4.139 26 C -0.138 4.138 27 C 0.523 3.477 28 O -0.521 6.521 29 H 0.258 0.742 30 H 0.367 0.633 31 H 0.013 0.987 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.413 0.587 40 H 0.131 0.869 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.083 -20.798 1.595 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.782 3.218 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.170 1.170 7 C -0.367 4.367 8 H 0.074 0.926 9 N -0.399 5.399 10 C 0.040 3.960 11 C -0.122 4.122 12 H 0.107 0.893 13 C -0.152 4.152 14 C -0.151 4.151 15 C -0.162 4.162 16 C 0.048 3.952 17 H 0.092 0.908 18 N -0.362 5.362 19 C 0.287 3.713 20 O -0.452 6.452 21 C -0.054 4.054 22 N -0.308 5.308 23 C 0.310 3.690 24 O -0.399 6.399 25 C -0.178 4.178 26 C -0.177 4.177 27 C 0.315 3.685 28 O -0.395 6.395 29 H 0.067 0.933 30 H 0.200 0.800 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.251 0.749 40 H 0.149 0.851 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.172 0.828 44 H 0.174 0.826 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 19.366 -20.624 1.264 28.320 hybrid contribution -0.734 1.667 0.167 1.829 sum 18.632 -18.958 1.431 26.620 Atomic orbital electron populations 1.69889 1.07221 1.26740 1.59602 1.25524 0.96112 1.01362 1.02517 0.85408 0.78920 0.79456 0.78016 1.20767 1.22271 1.16978 1.19026 0.82721 0.93471 1.41455 0.92612 1.42650 1.02389 1.04046 1.90856 1.20690 0.89880 0.87537 0.97845 1.22444 0.93625 0.96155 0.99999 0.89312 1.22551 0.96224 1.00863 0.95576 1.22320 0.95535 0.95636 1.01575 1.22493 0.96769 0.98297 0.98641 1.21541 0.90688 0.84273 0.98660 0.90798 1.46151 1.36056 1.06245 1.47705 1.21114 0.84468 0.85128 0.80623 1.90661 1.33196 1.85139 1.36183 1.21671 0.99977 0.82006 1.01737 1.46613 1.38373 1.22500 1.23311 1.21883 0.80506 0.88135 0.78427 1.90799 1.31858 1.63705 1.53567 1.22596 0.99934 0.93834 1.01476 1.22595 1.04037 0.96863 0.94226 1.21776 0.75911 0.85299 0.85493 1.90757 1.49644 1.75469 1.23631 0.93323 0.79952 0.96882 0.94712 0.91228 0.91589 0.90146 0.90507 0.91492 0.91011 0.74893 0.85120 0.83948 0.84364 0.82808 0.82642 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.27 13.97 21.65 0.30 -62.97 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.96 45.08 27.74 68.60 1.90 46.99 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.25 -10.21 6.52 99.48 0.65 -9.56 16 7 C -0.24 -13.40 10.47 84.03 0.88 -12.52 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 9 N -0.75 -34.39 5.30 -343.44 -1.82 -36.21 16 10 C 0.17 6.06 4.73 86.38 0.41 6.46 16 11 C -0.10 -2.89 2.85 -9.68 -0.03 -2.91 16 12 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 13 C -0.11 -2.81 6.20 31.93 0.20 -2.61 16 14 C -0.11 -2.21 6.83 31.67 0.22 -1.99 16 15 C -0.12 -2.71 6.59 31.32 0.21 -2.50 16 16 C 0.15 4.00 3.10 45.72 0.14 4.14 16 17 H 0.07 2.18 7.59 -2.39 -0.02 2.16 16 18 N -0.71 -17.91 4.36 -439.10 -1.91 -19.83 16 19 C 0.50 13.82 7.89 87.65 0.69 14.51 16 20 O -0.57 -19.44 16.10 -3.04 -0.05 -19.49 16 21 C 0.07 1.55 6.03 85.63 0.52 2.07 16 22 N -0.57 -11.65 2.04 -760.73 -1.55 -13.20 16 23 C 0.52 10.41 8.08 87.99 0.71 11.12 16 24 O -0.53 -15.42 17.48 -2.88 -0.05 -15.47 16 25 C -0.14 -0.96 7.03 30.46 0.21 -0.75 16 26 C -0.14 -0.82 7.03 30.46 0.21 -0.61 16 27 C 0.52 9.47 8.08 87.99 0.71 10.18 16 28 O -0.52 -13.12 17.48 -2.87 -0.05 -13.17 16 29 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 30 H 0.37 15.89 5.50 -92.71 -0.51 15.38 16 31 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 32 H 0.04 1.20 6.41 -2.39 -0.02 1.19 16 33 H 0.07 1.74 7.97 -2.38 -0.02 1.72 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.07 1.50 7.92 -2.39 -0.02 1.49 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.41 9.37 6.53 -92.71 -0.61 8.77 16 40 H 0.13 2.70 7.83 -2.39 -0.02 2.68 16 41 H 0.14 2.47 7.83 -2.39 -0.02 2.45 16 42 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.16 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.14 0.43 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -85.37 370.95 2.17 -83.21 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -0.15 Total: 28.85 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 5.55 Total: 21.29 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -4.99 Total: -132.21 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -0.15 Total: -48.13 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.99 kcal Total: -85.37 2.17 -83.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496920377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.296 kcal (2) G-P(sol) polarization free energy of solvation -85.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds