Wall clock time and date at job start Fri Apr 10 2020 18:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 120.00250 * 2 1 4 4 H 1.48505 * 109.47046 * 270.00274 * 3 2 1 5 5 H 1.48506 * 109.47332 * 30.00052 * 3 2 1 6 6 H 1.48498 * 109.47163 * 150.00122 * 3 2 1 7 7 C 1.38951 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00320 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99760 * 180.02562 * 7 2 1 10 10 C 1.34779 * 119.99925 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00016 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00203 * 180.02562 * 10 9 7 13 13 N 1.46890 * 109.47174 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99974 * 177.89921 * 13 12 10 15 15 C 1.53006 * 115.54927 * 294.31128 * 14 13 12 16 16 N 1.46507 * 109.46873 * 272.74296 * 15 14 13 17 17 C 1.34769 * 119.99743 * 174.95340 * 16 15 14 18 18 O 1.21283 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99956 * 180.02562 * 17 16 15 20 20 N 1.46498 * 109.47230 * 179.97438 * 19 17 16 21 21 N 1.28887 * 125.44815 * 89.99947 * 20 19 17 22 22 C 1.31043 * 107.91285 * 179.97438 * 21 20 19 23 23 N 1.33315 * 106.90501 * 359.97438 * 22 21 20 24 24 N 1.28784 * 125.44779 * 269.97800 * 20 19 17 25 25 C 1.52998 * 117.49936 * 79.97777 * 14 13 12 26 26 C 1.53002 * 117.50093 * 148.63760 * 14 13 12 27 27 H 0.97005 * 119.99626 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00285 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47125 * 59.98665 * 12 10 9 30 30 H 1.09006 * 109.46529 * 299.99867 * 12 10 9 31 31 H 1.00906 * 111.00193 * 301.84786 * 13 12 10 32 32 H 1.09001 * 109.46761 * 152.74806 * 15 14 13 33 33 H 1.08997 * 109.46978 * 32.74514 * 15 14 13 34 34 H 0.96997 * 120.00147 * 354.95364 * 16 15 14 35 35 H 1.09000 * 109.47124 * 59.99688 * 19 17 16 36 36 H 1.08999 * 109.47196 * 300.00170 * 19 17 16 37 37 H 1.07999 * 126.54534 * 180.02562 * 22 21 20 38 38 H 1.09006 * 117.50139 * 215.00339 * 25 14 13 39 39 H 1.09001 * 117.49837 * 0.02562 * 25 14 13 40 40 H 1.09000 * 117.49789 * 359.97438 * 26 14 13 41 41 H 1.09006 * 117.49877 * 144.97230 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3707 -0.0011 11 8 3.4472 -3.4211 -0.0020 12 6 5.5607 -2.3708 0.0001 13 7 6.0502 -3.7557 -0.0007 14 6 7.5179 -3.7953 -0.0499 15 6 8.1497 -3.2592 -1.3362 16 7 8.2387 -4.3383 -2.3231 17 6 8.6707 -4.0751 -3.5722 18 8 8.9864 -2.9450 -3.8792 19 6 8.7617 -5.1850 -4.5876 20 7 9.2538 -4.6458 -5.8577 21 7 10.4922 -4.5644 -6.2056 22 6 10.5406 -4.0321 -7.4021 23 7 9.2821 -3.7924 -7.7709 24 7 8.5181 -4.1777 -6.8054 25 6 8.2751 -3.5631 1.2591 26 6 8.2169 -4.9646 0.6465 27 1 -0.4850 0.8401 0.0004 28 1 3.8648 -0.3635 0.0004 29 1 5.9233 -1.8580 0.8910 30 1 5.9246 -1.8558 -0.8890 31 1 5.7015 -4.2631 0.7987 32 1 9.1490 -2.8813 -1.1199 33 1 7.5344 -2.4524 -1.7344 34 1 7.9866 -5.2422 -2.0775 35 1 7.7746 -5.6225 -4.7370 36 1 9.4480 -5.9515 -4.2275 37 1 11.4301 -3.8276 -7.9794 38 1 9.2234 -3.0284 1.2040 39 1 7.6842 -3.3814 2.1569 40 1 7.5877 -5.7044 1.1415 41 1 9.1266 -5.3524 0.1880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499229245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:52 Heat of formation + Delta-G solvation = 105.939372 kcal Electronic energy + Delta-G solvation = -26367.217633 eV Core-core repulsion = 22322.336323 eV Total energy + Delta-G solvation = -4044.881310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.57150 -40.36029 -39.07856 -38.03120 -35.27689 -34.67721 -34.09208 -33.32149 -32.82714 -31.67237 -30.15531 -27.23953 -26.78331 -24.21123 -23.97129 -23.53856 -22.75498 -21.06661 -20.12009 -19.44139 -18.41954 -18.35119 -18.23766 -16.82065 -16.56717 -16.35391 -16.04431 -15.58145 -15.46156 -15.12798 -14.88678 -14.29443 -14.13540 -14.00505 -13.94193 -13.55052 -13.13480 -12.76737 -12.72588 -12.47317 -12.22022 -12.19739 -11.86384 -11.80677 -11.43835 -11.26036 -11.22508 -11.06960 -10.91965 -10.61778 -10.55831 -10.21466 -10.00587 -9.61103 -9.50354 -8.65249 -8.29154 -8.21309 -6.34448 -3.86189 0.90224 1.44385 2.00845 2.03007 2.60769 3.00512 3.06172 3.14065 3.36608 3.66782 3.74781 3.86636 4.05200 4.07881 4.11358 4.22936 4.28184 4.41897 4.60165 4.62424 4.74918 5.17386 5.21929 5.30296 5.32580 5.43296 5.45883 5.47110 5.56349 5.60449 5.71049 5.75621 5.76239 5.86594 5.93879 6.87154 6.95720 7.33516 7.53683 7.63870 8.09870 8.10741 8.55093 8.90771 9.38232 9.76912 10.78446 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.002745 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.163164 B =10197.700443 C =11700.209745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.588 5.588 10 C 0.449 3.551 11 O -0.566 6.566 12 C 0.046 3.954 13 N -0.626 5.626 14 C 0.035 3.965 15 C 0.167 3.833 16 N -0.706 5.706 17 C 0.504 3.496 18 O -0.523 6.523 19 C 0.110 3.890 20 N -0.127 5.127 21 N -0.304 5.304 22 C 0.145 3.855 23 N -0.284 5.284 24 N -0.045 5.045 25 C -0.204 4.204 26 C -0.165 4.165 27 H 0.274 0.726 28 H 0.371 0.629 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.357 0.643 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.409 0.591 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.236 0.764 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.455 -10.562 -3.787 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.227 5.227 10 C 0.235 3.765 11 O -0.448 6.448 12 C -0.086 4.086 13 N -0.257 5.257 14 C -0.059 4.059 15 C 0.044 3.956 16 N -0.359 5.359 17 C 0.286 3.714 18 O -0.398 6.398 19 C -0.014 4.014 20 N -0.038 5.038 21 N -0.154 5.154 22 C -0.158 4.158 23 N -0.156 5.156 24 N -0.039 5.039 25 C -0.245 4.245 26 C -0.203 4.203 27 H 0.085 0.915 28 H 0.203 0.797 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.177 0.823 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.244 0.756 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.252 0.748 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 23.294 -10.434 -4.526 25.922 hybrid contribution 1.203 1.343 1.044 2.084 sum 24.497 -9.091 -3.482 26.360 Atomic orbital electron populations 1.69623 1.05650 1.27579 1.49054 1.25044 0.95505 0.98017 0.97515 0.86680 0.79722 0.84001 0.79043 1.19481 1.20124 1.19527 1.19422 0.79154 0.96647 1.48270 0.86245 1.42199 1.07590 1.06156 1.66770 1.19613 0.87979 0.84632 0.84324 1.90566 1.69385 1.30884 1.53960 1.21732 0.95174 0.90028 1.01661 1.59841 1.02960 1.13401 1.49486 1.21848 0.88221 1.03693 0.92104 1.20800 1.00137 0.89398 0.85304 1.45697 1.66484 1.13363 1.10327 1.20177 0.78485 0.89591 0.83142 1.90838 1.48042 1.22198 1.78692 1.21997 1.05183 0.96318 0.77947 1.49490 1.01675 1.38173 1.14500 1.74682 1.02801 1.21613 1.16290 1.27349 0.97954 0.99440 0.91103 1.75916 1.01410 1.18530 1.19698 1.79075 1.21645 1.09748 0.93388 1.23675 1.03281 0.99702 0.97835 1.23179 1.02233 0.91773 1.03109 0.91545 0.79653 0.93265 0.89340 0.82254 0.90640 0.89805 0.75598 0.83142 0.83595 0.74785 0.88323 0.88244 0.87893 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 13.96 55.50 0.77 -24.84 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 7 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 8 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 9 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 10 C 0.45 9.84 7.82 -10.98 -0.09 9.76 16 11 O -0.57 -14.66 15.82 5.55 0.09 -14.57 16 12 C 0.05 0.71 6.03 -4.98 -0.03 0.68 16 13 N -0.63 -8.29 6.26 -101.22 -0.63 -8.93 16 14 C 0.03 0.32 1.90 -131.60 -0.25 0.07 16 15 C 0.17 1.61 5.75 -4.03 -0.02 1.58 16 16 N -0.71 -5.55 5.47 -60.29 -0.33 -5.88 16 17 C 0.50 4.93 7.90 -10.99 -0.09 4.84 16 18 O -0.52 -7.81 16.43 5.56 0.09 -7.72 16 19 C 0.11 0.71 7.08 -5.19 -0.04 0.67 16 20 N -0.13 -1.36 3.49 -11.72 -0.04 -1.40 16 21 N -0.30 -3.24 12.13 29.34 0.36 -2.88 16 22 C 0.14 1.40 13.26 -91.58 -1.21 0.19 16 23 N -0.28 -3.62 12.50 29.33 0.37 -3.25 16 24 N -0.04 -0.59 13.25 60.35 0.80 0.21 16 25 C -0.20 -1.60 10.07 -26.69 -0.27 -1.87 16 26 C -0.17 -1.12 9.56 -26.69 -0.26 -1.37 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.29 6.55 -51.93 -0.34 0.95 16 31 H 0.36 4.88 8.38 -39.29 -0.33 4.55 16 32 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 33 H 0.08 1.02 6.46 -51.93 -0.34 0.68 16 34 H 0.41 2.11 8.17 -40.82 -0.33 1.78 16 35 H 0.15 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.15 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.24 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.10 0.68 8.04 -51.93 -0.42 0.26 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -38.87 361.75 -5.26 -44.13 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -4.92 Total: 11.99 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -2.50 Total: 6.87 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 1.24 Total: -60.85 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.18 Total: -22.29 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.87 -5.26 -44.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499229245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.072 kcal (2) G-P(sol) polarization free energy of solvation -38.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds