Wall clock time and date at job start Fri Apr 10 2020 18:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34133 * 125.66536 * 2 1 4 4 C 1.38192 * 107.52691 * 180.02562 * 3 2 1 5 5 C 1.47090 * 126.45965 * 179.97438 * 4 3 2 6 6 O 1.21545 * 119.99758 * 179.97438 * 5 4 3 7 7 O 1.34767 * 119.99891 * 359.97412 * 5 4 3 8 8 C 1.41861 * 107.07751 * 359.97438 * 4 3 2 9 9 N 1.39779 * 126.08251 * 180.02562 * 8 4 3 10 10 C 1.34776 * 120.00174 * 179.97438 * 9 8 4 11 11 O 1.21590 * 120.00122 * 354.99031 * 10 9 8 12 12 N 1.34775 * 120.00342 * 174.98756 * 10 9 8 13 13 C 1.46964 * 120.59107 * 4.84799 * 12 10 9 14 14 C 1.53806 * 108.40135 * 124.75888 * 13 12 10 15 15 N 1.46960 * 108.58304 * 49.63488 * 14 13 12 16 16 C 1.36932 * 120.59528 * 124.62591 * 15 14 13 17 17 H 1.08001 * 119.99950 * 206.31545 * 16 15 14 18 18 C 1.38810 * 120.00155 * 26.31462 * 16 15 14 19 19 N 1.31617 * 120.00037 * 217.14221 * 18 16 15 20 20 Si 1.86796 * 119.99907 * 37.14486 * 18 16 15 21 21 H 1.48500 * 109.47437 * 95.29828 * 20 18 16 22 22 H 1.48506 * 109.46923 * 215.29787 * 20 18 16 23 23 H 1.48503 * 109.47012 * 335.29345 * 20 18 16 24 24 C 1.46975 * 118.80868 * 304.65109 * 15 14 13 25 25 C 1.46960 * 120.59866 * 185.12184 * 12 10 9 26 26 N 1.30907 * 107.83832 * 0.02562 * 8 4 3 27 27 H 1.08998 * 109.46933 * 269.97923 * 1 2 3 28 28 H 1.09006 * 109.47055 * 29.97269 * 1 2 3 29 29 H 1.08995 * 109.47118 * 149.97784 * 1 2 3 30 30 H 1.07996 * 126.23692 * 359.97438 * 3 2 1 31 31 H 0.96706 * 116.99927 * 179.97438 * 7 5 4 32 32 H 0.97002 * 120.00139 * 359.97438 * 9 8 4 33 33 H 1.09002 * 109.60812 * 244.54186 * 13 12 10 34 34 H 1.09000 * 109.61400 * 5.04892 * 13 12 10 35 35 H 1.09008 * 109.74148 * 289.84495 * 14 13 12 36 36 H 1.08999 * 109.53609 * 169.30678 * 14 13 12 37 37 H 0.97000 * 120.00197 * 179.97438 * 19 18 16 38 38 H 1.08991 * 109.60560 * 295.47600 * 24 15 14 39 39 H 1.09001 * 109.74409 * 175.04941 * 24 15 14 40 40 H 1.09001 * 109.60688 * 354.95608 * 25 12 10 41 41 H 1.09002 * 109.60754 * 115.28248 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2471 1.0897 0.0000 4 6 3.5603 0.6595 -0.0006 5 6 4.7592 1.5116 -0.0013 6 8 5.8644 1.0057 -0.0013 7 8 4.6324 2.8533 -0.0020 8 6 3.5340 -0.7588 -0.0003 9 7 4.6483 -1.6028 -0.0003 10 6 4.4807 -2.9401 0.0005 11 8 3.3643 -3.4129 0.0931 12 7 5.5505 -3.7535 -0.1014 13 6 6.9123 -3.2008 -0.1073 14 6 7.7166 -3.8796 1.0143 15 7 7.5422 -5.3345 0.9010 16 6 8.6292 -6.1607 0.7966 17 1 8.5348 -7.1177 0.3052 18 6 9.8525 -5.7681 1.3224 19 7 10.9674 -6.0711 0.6919 20 14 9.9162 -4.8100 2.9246 21 1 10.1398 -5.7480 4.0538 22 1 11.0283 -3.8273 2.8698 23 1 8.6312 -4.0927 3.1238 24 6 6.1802 -5.8867 0.9013 25 6 5.3761 -5.2083 -0.2146 26 7 2.2807 -1.1367 -0.0002 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 1.9116 2.1163 -0.0004 31 1 5.4488 3.3715 -0.0021 32 1 5.5421 -1.2261 -0.0007 33 1 7.3833 -3.3988 -1.0702 34 1 6.8717 -2.1259 0.0687 35 1 7.3526 -3.5420 1.9847 36 1 8.7721 -3.6284 0.9093 37 1 11.8222 -5.7964 1.0591 38 1 5.7068 -5.6919 1.8636 39 1 6.2185 -6.9613 0.7232 40 1 4.3207 -5.4594 -0.1096 41 1 5.7374 -5.5455 -1.1862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608099244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:10 Heat of formation + Delta-G solvation = 22.102171 kcal Electronic energy + Delta-G solvation = -27767.364227 eV Core-core repulsion = 23686.554712 eV Total energy + Delta-G solvation = -4080.809515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81256 -40.00758 -39.79214 -37.21574 -36.23423 -35.05230 -33.97278 -32.63017 -31.45765 -30.75320 -30.49142 -27.57231 -26.78716 -24.16723 -23.43960 -23.21488 -22.18634 -21.19734 -20.20798 -19.10365 -18.26273 -17.94754 -17.65308 -16.67501 -16.34168 -16.23591 -15.76920 -15.46459 -15.31591 -14.88227 -14.54734 -14.26022 -13.99329 -13.75831 -13.69405 -13.34180 -13.21389 -13.00241 -12.84904 -12.54824 -12.12579 -11.86356 -11.74034 -11.12991 -11.03967 -10.94743 -10.79826 -10.73723 -10.45265 -10.34449 -10.14694 -9.72075 -9.46307 -9.23104 -8.75753 -8.54481 -8.14482 -6.99517 -6.08047 -3.26539 1.04633 1.87605 1.92459 2.63576 2.89981 3.06104 3.38665 3.51191 3.55771 3.57234 3.88004 4.11321 4.37835 4.54524 4.76350 4.83726 4.85698 5.03518 5.09664 5.23688 5.34076 5.48096 5.57556 5.64995 5.77181 5.94445 6.07339 6.12038 6.27597 6.29959 6.45693 6.52824 6.59223 6.63023 6.75664 6.83499 7.02061 7.46239 7.76793 7.89302 8.07518 8.26325 8.71664 8.89992 9.68725 10.09195 11.06267 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.003536 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.443046 B = 7916.611239 C = 9074.744104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.354 5.354 3 C 0.146 3.854 4 C -0.311 4.311 5 C 0.564 3.436 6 O -0.527 6.527 7 O -0.517 6.517 8 C 0.382 3.618 9 N -0.647 5.647 10 C 0.699 3.301 11 O -0.557 6.557 12 N -0.609 5.609 13 C 0.087 3.913 14 C 0.133 3.867 15 N -0.599 5.599 16 C -0.275 4.275 17 H 0.083 0.917 18 C 0.040 3.960 19 N -0.878 5.878 20 Si 0.833 3.167 21 H -0.292 1.292 22 H -0.293 1.293 23 H -0.257 1.257 24 C 0.132 3.868 25 C 0.114 3.886 26 N -0.278 5.278 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.194 0.806 31 H 0.414 0.586 32 H 0.426 0.574 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.079 0.921 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.287 19.225 -2.909 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.131 5.131 3 C -0.010 4.010 4 C -0.326 4.326 5 C 0.410 3.590 6 O -0.417 6.417 7 O -0.329 6.329 8 C 0.122 3.878 9 N -0.305 5.305 10 C 0.400 3.600 11 O -0.431 6.431 12 N -0.346 5.346 13 C -0.038 4.038 14 C 0.006 3.994 15 N -0.322 5.322 16 C -0.402 4.402 17 H 0.101 0.899 18 C -0.162 4.162 19 N -0.518 5.518 20 Si 0.660 3.340 21 H -0.220 1.220 22 H -0.220 1.220 23 H -0.182 1.182 24 C 0.005 3.995 25 C -0.010 4.010 26 N -0.108 5.108 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.211 0.789 31 H 0.273 0.727 32 H 0.270 0.730 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.839 17.348 -2.883 27.268 hybrid contribution 1.879 1.835 1.069 2.836 sum -18.960 19.183 -1.814 27.033 Atomic orbital electron populations 1.22040 0.72845 1.05191 1.04187 1.48374 1.07495 1.03778 1.53429 1.23150 0.89346 0.94269 0.94212 1.18868 0.91707 0.90640 1.31394 1.19543 0.87637 0.80236 0.71624 1.90864 1.27712 1.74886 1.48254 1.84516 1.42715 1.19256 1.86404 1.18773 0.87623 0.86728 0.94665 1.42514 1.07520 1.04518 1.75909 1.15873 0.85191 0.80379 0.78582 1.90967 1.22500 1.73857 1.55739 1.47225 1.04666 1.07274 1.75413 1.22584 0.82221 0.96521 1.02438 1.21766 0.98591 0.84676 0.94344 1.44269 1.01644 1.00735 1.85585 1.18773 0.86301 1.02662 1.32441 0.89895 1.25201 0.94915 0.97630 0.98430 1.70119 0.98054 1.47349 1.36276 0.87621 0.78071 0.79848 0.88489 1.21990 1.21993 1.18210 1.21370 0.85596 0.97407 0.95108 1.22160 1.01391 0.77068 1.00405 1.78185 0.98937 1.03326 1.30322 0.89920 0.88857 0.88448 0.78882 0.72729 0.73032 0.90437 0.91505 0.94874 0.90320 0.92715 0.95495 0.90557 0.89445 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.43 59.85 0.68 1.16 16 2 N -0.35 -3.55 3.97 -67.59 -0.27 -3.82 16 3 C 0.15 1.22 11.32 -16.56 -0.19 1.04 16 4 C -0.31 -3.76 6.14 -104.94 -0.64 -4.41 16 5 C 0.56 6.47 8.32 34.32 0.29 6.76 16 6 O -0.53 -7.58 15.99 -19.30 -0.31 -7.89 16 7 O -0.52 -3.78 13.26 -40.67 -0.54 -4.32 16 8 C 0.38 6.00 7.78 -154.46 -1.20 4.80 16 9 N -0.65 -10.93 5.33 -15.30 -0.08 -11.01 16 10 C 0.70 13.34 8.26 -86.92 -0.72 12.62 16 11 O -0.56 -11.93 14.49 5.29 0.08 -11.86 16 12 N -0.61 -11.37 2.94 -177.95 -0.52 -11.90 16 13 C 0.09 1.59 6.59 -3.37 -0.02 1.56 16 14 C 0.13 2.89 4.56 -3.37 -0.02 2.87 16 15 N -0.60 -14.14 2.71 -171.77 -0.47 -14.61 16 16 C -0.27 -7.49 9.85 -15.06 -0.15 -7.64 16 17 H 0.08 2.40 8.05 -52.49 -0.42 1.97 16 18 C 0.04 1.12 4.81 -17.43 -0.08 1.04 16 19 N -0.88 -26.13 13.97 55.49 0.78 -25.36 16 20 Si 0.83 21.06 26.46 -169.99 -4.50 16.56 16 21 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 23 H -0.26 -6.26 4.97 56.52 0.28 -5.98 16 24 C 0.13 2.66 6.67 -3.59 -0.02 2.64 16 25 C 0.11 2.08 6.60 -3.60 -0.02 2.06 16 26 N -0.28 -4.37 10.73 31.62 0.34 -4.03 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.19 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.41 1.34 9.11 45.56 0.42 1.76 16 32 H 0.43 6.82 4.42 -40.82 -0.18 6.64 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.07 1.07 5.61 -51.93 -0.29 0.78 16 35 H 0.03 0.74 6.77 -51.92 -0.35 0.39 16 36 H 0.08 1.80 5.59 -51.93 -0.29 1.51 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.47 7.93 -51.93 -0.41 1.05 16 40 H 0.09 1.55 6.99 -51.93 -0.36 1.19 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -37.99 341.05 -6.56 -44.56 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.11 Total: 4.03 kcal Atomic # 6 Polarization: 26.60 SS G_CDS: -2.10 Total: 24.50 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -0.22 Total: -70.72 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.77 Total: -24.06 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.50 Total: 16.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.99 -6.56 -44.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608099244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.657 kcal (2) G-P(sol) polarization free energy of solvation -37.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds