Wall clock time and date at job start Fri Apr 10 2020 18:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34133 * 125.66536 * 2 1 4 4 C 1.38192 * 107.52691 * 180.02562 * 3 2 1 5 5 C 1.47090 * 126.45965 * 179.97438 * 4 3 2 6 6 O 1.21545 * 119.99758 * 179.97438 * 5 4 3 7 7 O 1.34767 * 119.99891 * 359.97412 * 5 4 3 8 8 C 1.41861 * 107.07751 * 359.97438 * 4 3 2 9 9 N 1.39779 * 126.08251 * 180.02562 * 8 4 3 10 10 C 1.34776 * 120.00174 * 179.97438 * 9 8 4 11 11 O 1.21590 * 120.00122 * 354.99031 * 10 9 8 12 12 N 1.34775 * 120.00342 * 174.98756 * 10 9 8 13 13 C 1.46964 * 120.59107 * 4.84799 * 12 10 9 14 14 C 1.53806 * 108.40135 * 124.75888 * 13 12 10 15 15 N 1.46960 * 108.58304 * 49.63488 * 14 13 12 16 16 C 1.36932 * 120.59528 * 124.62591 * 15 14 13 17 17 H 1.08001 * 119.99950 * 206.31545 * 16 15 14 18 18 C 1.38810 * 120.00155 * 26.31462 * 16 15 14 19 19 N 1.31617 * 120.00037 * 217.14221 * 18 16 15 20 20 Si 1.86796 * 119.99907 * 37.14486 * 18 16 15 21 21 H 1.48500 * 109.47437 * 95.29828 * 20 18 16 22 22 H 1.48506 * 109.46923 * 215.29787 * 20 18 16 23 23 H 1.48503 * 109.47012 * 335.29345 * 20 18 16 24 24 C 1.46975 * 118.80868 * 304.65109 * 15 14 13 25 25 C 1.46960 * 120.59866 * 185.12184 * 12 10 9 26 26 N 1.30907 * 107.83832 * 0.02562 * 8 4 3 27 27 H 1.08998 * 109.46933 * 269.97923 * 1 2 3 28 28 H 1.09006 * 109.47055 * 29.97269 * 1 2 3 29 29 H 1.08995 * 109.47118 * 149.97784 * 1 2 3 30 30 H 1.07996 * 126.23692 * 359.97438 * 3 2 1 31 31 H 0.96706 * 116.99927 * 179.97438 * 7 5 4 32 32 H 0.97002 * 120.00139 * 359.97438 * 9 8 4 33 33 H 1.09002 * 109.60812 * 244.54186 * 13 12 10 34 34 H 1.09000 * 109.61400 * 5.04892 * 13 12 10 35 35 H 1.09008 * 109.74148 * 289.84495 * 14 13 12 36 36 H 1.08999 * 109.53609 * 169.30678 * 14 13 12 37 37 H 0.97000 * 120.00197 * 179.97438 * 19 18 16 38 38 H 1.08991 * 109.60560 * 295.47600 * 24 15 14 39 39 H 1.09001 * 109.74409 * 175.04941 * 24 15 14 40 40 H 1.09001 * 109.60688 * 354.95608 * 25 12 10 41 41 H 1.09002 * 109.60754 * 115.28248 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2471 1.0897 0.0000 4 6 3.5603 0.6595 -0.0006 5 6 4.7592 1.5116 -0.0013 6 8 5.8644 1.0057 -0.0013 7 8 4.6324 2.8533 -0.0020 8 6 3.5340 -0.7588 -0.0003 9 7 4.6483 -1.6028 -0.0003 10 6 4.4807 -2.9401 0.0005 11 8 3.3643 -3.4129 0.0931 12 7 5.5505 -3.7535 -0.1014 13 6 6.9123 -3.2008 -0.1073 14 6 7.7166 -3.8796 1.0143 15 7 7.5422 -5.3345 0.9010 16 6 8.6292 -6.1607 0.7966 17 1 8.5348 -7.1177 0.3052 18 6 9.8525 -5.7681 1.3224 19 7 10.9674 -6.0711 0.6919 20 14 9.9162 -4.8100 2.9246 21 1 10.1398 -5.7480 4.0538 22 1 11.0283 -3.8273 2.8698 23 1 8.6312 -4.0927 3.1238 24 6 6.1802 -5.8867 0.9013 25 6 5.3761 -5.2083 -0.2146 26 7 2.2807 -1.1367 -0.0002 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 1.9116 2.1163 -0.0004 31 1 5.4488 3.3715 -0.0021 32 1 5.5421 -1.2261 -0.0007 33 1 7.3833 -3.3988 -1.0702 34 1 6.8717 -2.1259 0.0687 35 1 7.3526 -3.5420 1.9847 36 1 8.7721 -3.6284 0.9093 37 1 11.8222 -5.7964 1.0591 38 1 5.7068 -5.6919 1.8636 39 1 6.2185 -6.9613 0.7232 40 1 4.3207 -5.4594 -0.1096 41 1 5.7374 -5.5455 -1.1862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608099244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:09 Heat of formation + Delta-G solvation = -6.830889 kcal Electronic energy + Delta-G solvation = -27768.618859 eV Core-core repulsion = 23686.554712 eV Total energy + Delta-G solvation = -4082.064147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.72718 -41.38407 -40.58476 -38.82959 -37.02778 -36.21941 -35.71417 -33.81325 -33.15825 -32.11883 -31.61327 -29.02748 -27.76656 -25.62874 -24.90229 -24.54902 -23.37226 -22.29554 -21.48952 -20.44823 -19.63102 -18.75045 -18.69391 -18.14736 -17.66036 -17.27663 -17.00681 -16.54193 -16.49783 -16.11014 -16.05644 -15.85292 -15.41350 -15.29061 -14.86189 -14.62385 -14.43895 -14.15830 -13.94652 -13.69560 -13.52201 -13.42053 -12.79240 -12.57843 -12.47895 -12.39494 -12.15561 -12.03941 -11.97559 -11.92144 -11.67624 -11.44651 -11.15693 -10.69082 -10.18795 -9.95159 -9.49863 -8.90488 -8.24570 -5.40059 0.34813 0.88247 0.99203 1.34737 1.45858 1.52846 1.63422 1.89188 2.24694 2.30848 2.44014 2.66418 2.90609 3.32845 3.35031 3.83686 4.01547 4.06089 4.14524 4.20975 4.34453 4.44529 4.46242 4.49649 4.52820 4.61347 4.72267 4.75828 4.78133 4.83060 4.95104 5.12786 5.29203 5.51929 5.61383 5.72426 5.83786 5.89539 6.10604 6.33563 6.78630 6.87260 7.09730 7.29808 7.60201 8.03837 8.93248 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.003536 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.443046 B = 7916.611239 C = 9074.744104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.350 5.350 3 C 0.180 3.820 4 C -0.336 4.336 5 C 0.570 3.430 6 O -0.566 6.566 7 O -0.499 6.499 8 C 0.351 3.649 9 N -0.646 5.646 10 C 0.699 3.301 11 O -0.584 6.584 12 N -0.613 5.613 13 C 0.100 3.900 14 C 0.130 3.870 15 N -0.610 5.610 16 C -0.265 4.265 17 H 0.057 0.943 18 C -0.007 4.007 19 N -0.923 5.923 20 Si 0.893 3.107 21 H -0.302 1.302 22 H -0.292 1.292 23 H -0.243 1.243 24 C 0.132 3.868 25 C 0.123 3.877 26 N -0.329 5.329 27 H 0.096 0.904 28 H 0.140 0.860 29 H 0.086 0.914 30 H 0.251 0.749 31 H 0.433 0.567 32 H 0.428 0.572 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.264 0.736 38 H 0.028 0.972 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.726 22.547 -2.648 31.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.127 5.127 3 C 0.024 3.976 4 C -0.351 4.351 5 C 0.417 3.583 6 O -0.459 6.459 7 O -0.312 6.312 8 C 0.092 3.908 9 N -0.303 5.303 10 C 0.400 3.600 11 O -0.460 6.460 12 N -0.349 5.349 13 C -0.025 4.025 14 C 0.004 3.996 15 N -0.335 5.335 16 C -0.393 4.393 17 H 0.075 0.925 18 C -0.205 4.205 19 N -0.566 5.566 20 Si 0.720 3.280 21 H -0.230 1.230 22 H -0.219 1.219 23 H -0.167 1.167 24 C 0.007 3.993 25 C -0.001 4.001 26 N -0.159 5.159 27 H 0.115 0.885 28 H 0.158 0.842 29 H 0.105 0.895 30 H 0.267 0.733 31 H 0.295 0.705 32 H 0.272 0.728 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.340 20.739 -2.614 31.332 hybrid contribution 2.440 0.891 0.945 2.764 sum -20.899 21.630 -1.669 30.124 Atomic orbital electron populations 1.22510 0.69998 1.06974 1.05678 1.48730 1.08865 1.02843 1.52241 1.23920 0.87533 0.95781 0.90358 1.19073 0.93661 0.89283 1.33119 1.19482 0.86837 0.81256 0.70740 1.90843 1.29015 1.75817 1.50261 1.84452 1.43973 1.17276 1.85490 1.19103 0.87377 0.88128 0.96176 1.42360 1.08359 1.03813 1.75729 1.15956 0.84681 0.81108 0.78217 1.90936 1.23430 1.74605 1.57026 1.47244 1.04746 1.07374 1.75555 1.22395 0.81528 0.97528 1.01012 1.21765 0.98491 0.83806 0.95545 1.44376 1.01966 1.01354 1.85755 1.18726 0.87384 1.02121 1.31092 0.92508 1.25647 0.94678 0.99628 1.00589 1.70186 0.98594 1.50132 1.37653 0.86667 0.78554 0.78533 0.84201 1.23011 1.21898 1.16717 1.21460 0.84033 0.97997 0.95846 1.22017 1.01319 0.77038 0.99735 1.78003 0.99715 1.07034 1.31136 0.88549 0.84231 0.89537 0.73340 0.70473 0.72814 0.90249 0.89099 0.94972 0.91649 0.92719 0.95444 0.89970 0.88770 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.43 127.77 1.46 2.01 16 2 N -0.35 -6.04 3.97 -367.76 -1.46 -7.50 16 3 C 0.18 2.30 11.32 84.33 0.95 3.26 16 4 C -0.34 -7.43 6.14 -20.07 -0.12 -7.55 16 5 C 0.57 11.87 8.32 70.14 0.58 12.45 16 6 O -0.57 -15.72 15.99 19.69 0.31 -15.41 16 7 O -0.50 -5.53 13.26 -56.78 -0.75 -6.28 16 8 C 0.35 10.78 7.78 133.92 1.04 11.82 16 9 N -0.65 -21.65 5.33 -320.58 -1.71 -23.36 16 10 C 0.70 26.58 8.26 179.06 1.48 28.06 16 11 O -0.58 -25.13 14.49 -4.00 -0.06 -25.19 16 12 N -0.61 -22.56 2.94 -835.17 -2.46 -25.01 16 13 C 0.10 3.56 6.59 86.56 0.57 4.13 16 14 C 0.13 5.57 4.56 86.56 0.39 5.97 16 15 N -0.61 -28.77 2.71 -697.36 -1.89 -30.66 16 16 C -0.26 -14.65 9.85 84.03 0.83 -13.83 16 17 H 0.06 3.39 8.05 -2.91 -0.02 3.36 16 18 C -0.01 -0.40 4.81 84.86 0.41 0.00 16 19 N -0.92 -56.12 13.97 21.65 0.30 -55.81 16 20 Si 0.89 44.19 26.46 68.60 1.81 46.01 16 21 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 22 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.24 -11.34 4.97 99.48 0.49 -10.84 16 24 C 0.13 5.30 6.67 86.41 0.58 5.88 16 25 C 0.12 4.44 6.60 86.41 0.57 5.01 16 26 N -0.33 -10.07 10.73 -53.89 -0.58 -10.64 16 27 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.14 -0.39 8.14 -2.38 -0.02 -0.41 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.25 0.14 8.06 -2.91 -0.02 0.11 16 31 H 0.43 1.37 9.11 -74.05 -0.67 0.70 16 32 H 0.43 13.55 4.42 -92.71 -0.41 13.14 16 33 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.09 2.82 5.61 -2.39 -0.01 2.80 16 35 H 0.03 1.39 6.77 -2.38 -0.02 1.38 16 36 H 0.07 2.97 5.59 -2.39 -0.01 2.96 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 3.16 7.93 -2.39 -0.02 3.14 16 40 H 0.09 3.31 6.99 -2.39 -0.02 3.29 16 41 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -85.29 341.05 2.08 -83.21 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -0.19 Total: 13.44 kcal Atomic # 6 Polarization: 48.48 SS G_CDS: 8.74 Total: 57.22 kcal Atomic # 7 Polarization: -145.20 SS G_CDS: -7.79 Total: -152.99 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.50 Total: -46.88 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.81 Total: 46.01 kcal Total: -85.29 2.08 -83.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608099244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.379 kcal (2) G-P(sol) polarization free energy of solvation -85.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds