Wall clock time and date at job start Fri Apr 10 2020 18:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40061 * 125.95044 * 2 1 4 4 C 1.31917 * 108.25960 * 179.97438 * 3 2 1 5 5 C 1.47590 * 125.97181 * 180.25850 * 4 3 2 6 6 O 1.21492 * 119.99919 * 179.69625 * 5 4 3 7 7 O 1.34734 * 120.00183 * 359.69661 * 5 4 3 8 8 C 1.41064 * 108.05638 * 359.97438 * 4 3 2 9 9 C 1.35722 * 107.78895 * 0.02562 * 8 4 3 10 10 N 1.39542 * 126.09878 * 180.02562 * 9 8 4 11 11 C 1.34778 * 120.00205 * 359.96587 * 10 9 8 12 12 O 1.21589 * 119.99684 * 354.47565 * 11 10 9 13 13 N 1.34776 * 120.00081 * 174.47195 * 11 10 9 14 14 C 1.46965 * 120.59343 * 5.40542 * 13 11 10 15 15 C 1.53806 * 108.39978 * 124.75909 * 14 13 11 16 16 N 1.46971 * 108.57867 * 49.63190 * 15 14 13 17 17 C 1.36943 * 120.59184 * 124.62891 * 16 15 14 18 18 H 1.07994 * 119.99828 * 216.07979 * 17 16 15 19 19 C 1.38815 * 120.00110 * 36.07478 * 17 16 15 20 20 N 1.31623 * 119.99827 * 356.53203 * 19 17 16 21 21 Si 1.86797 * 120.00081 * 176.52975 * 19 17 16 22 22 H 1.48497 * 109.47008 * 90.00137 * 21 19 17 23 23 H 1.48500 * 109.47177 * 210.00283 * 21 19 17 24 24 H 1.48507 * 109.47107 * 330.00357 * 21 19 17 25 25 C 1.46965 * 118.81398 * 304.64948 * 16 15 14 26 26 C 1.46964 * 120.59352 * 185.68243 * 13 11 10 27 27 H 1.08996 * 109.47319 * 269.99750 * 1 2 3 28 28 H 1.08994 * 109.47229 * 30.00469 * 1 2 3 29 29 H 1.08998 * 109.46962 * 150.00404 * 1 2 3 30 30 H 0.96694 * 117.00138 * 180.02562 * 7 5 4 31 31 H 1.08004 * 126.09984 * 179.97438 * 8 4 3 32 32 H 0.97003 * 120.00114 * 179.97438 * 10 9 8 33 33 H 1.09004 * 109.60630 * 244.53574 * 14 13 11 34 34 H 1.08995 * 109.61165 * 5.04675 * 14 13 11 35 35 H 1.09008 * 109.74069 * 289.85076 * 15 14 13 36 36 H 1.08996 * 109.67708 * 169.38430 * 15 14 13 37 37 H 0.97001 * 120.00049 * 179.97438 * 20 19 17 38 38 H 1.08998 * 109.60564 * 295.47896 * 25 16 15 39 39 H 1.09002 * 109.75054 * 175.05473 * 25 16 15 40 40 H 1.09000 * 109.61103 * 354.94679 * 26 13 11 41 41 H 1.09003 * 109.61013 * 115.28769 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2873 1.1338 0.0000 4 6 3.5441 0.7330 0.0006 5 6 4.7330 1.6075 0.0062 6 8 5.8457 1.1198 0.0117 7 8 4.5843 2.9466 0.0051 8 6 3.5531 -0.6776 0.0015 9 6 2.2634 -1.1005 0.0010 10 7 1.8335 -2.4281 0.0021 11 6 2.7363 -3.4288 0.0032 12 8 3.9217 -3.1782 -0.0981 13 7 2.3250 -4.7073 0.1168 14 6 0.8922 -5.0345 0.1211 15 6 0.6258 -6.0631 -0.9909 16 7 1.6020 -7.1543 -0.8632 17 6 1.1841 -8.4532 -0.7470 18 1 1.7266 -9.1404 -0.1147 19 6 0.0633 -8.8865 -1.4418 20 7 -0.6376 -8.0332 -2.1581 21 14 -0.4504 -10.6806 -1.3602 22 1 -1.3857 -10.8765 -0.2236 23 1 -1.1248 -11.0606 -2.6275 24 1 0.7512 -11.5312 -1.1647 25 6 3.0346 -6.8264 -0.8620 26 6 3.3011 -5.7985 0.2444 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 5.3921 3.4780 0.0085 31 1 4.4298 -1.3084 0.0018 32 1 0.8848 -2.6307 0.0019 33 1 0.6165 -5.4569 1.0875 34 1 0.3103 -4.1321 -0.0659 35 1 0.7341 -5.5876 -1.9658 36 1 -0.3836 -6.4614 -0.8882 37 1 -1.4206 -8.3361 -2.6440 38 1 3.3143 -6.4054 -1.8277 39 1 3.6185 -7.7273 -0.6728 40 1 4.3104 -5.4007 0.1387 41 1 3.1950 -6.2719 1.2205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608143682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:13 Heat of formation + Delta-G solvation = 17.437664 kcal Electronic energy + Delta-G solvation = -27353.105995 eV Core-core repulsion = 23272.094212 eV Total energy + Delta-G solvation = -4081.011783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.79420 -40.24737 -39.72575 -37.12931 -36.23747 -35.08160 -34.03137 -33.41846 -31.47866 -30.26947 -29.25857 -27.72856 -26.94103 -24.46282 -23.90968 -23.08475 -21.90491 -20.90795 -20.40657 -19.12647 -18.85722 -17.97638 -17.49261 -16.41305 -16.33471 -16.17429 -15.80653 -15.57037 -15.08527 -14.91564 -14.53306 -13.95754 -13.79086 -13.58505 -13.54785 -13.51335 -13.40699 -13.10067 -12.75742 -12.67973 -11.81174 -11.75149 -11.36016 -11.13013 -11.09676 -11.00797 -10.98869 -10.82825 -10.57466 -10.37519 -10.23750 -9.98755 -9.80113 -9.31062 -8.67518 -8.56851 -8.12862 -6.71778 -5.96917 -3.52144 0.97974 1.69392 1.93204 2.44779 3.01945 3.03586 3.26218 3.32978 3.34669 3.35939 3.79130 4.12573 4.33826 4.78881 4.83068 5.07477 5.08388 5.12747 5.22559 5.32815 5.59200 5.67351 5.72702 5.76767 5.81537 5.95114 6.03121 6.19555 6.21160 6.28397 6.46393 6.58036 6.74533 6.83760 6.89545 7.10648 7.24360 7.45322 7.62967 7.74951 7.90112 8.32671 8.52421 9.04394 9.61860 10.21864 11.09033 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.002676 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.911087 B =10460.865899 C =11232.373991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.376 5.376 3 N -0.231 5.231 4 C 0.050 3.950 5 C 0.573 3.427 6 O -0.494 6.494 7 O -0.503 6.503 8 C -0.224 4.224 9 C 0.335 3.665 10 N -0.663 5.663 11 C 0.710 3.290 12 O -0.568 6.568 13 N -0.603 5.603 14 C 0.081 3.919 15 C 0.154 3.846 16 N -0.592 5.592 17 C -0.257 4.257 18 H 0.067 0.933 19 C 0.011 3.989 20 N -0.906 5.906 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.277 1.277 25 C 0.130 3.870 26 C 0.112 3.888 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.415 0.585 31 H 0.189 0.811 32 H 0.409 0.591 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.114 0.886 37 H 0.257 0.743 38 H 0.026 0.974 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 16.270 5.401 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.167 5.167 3 N -0.061 5.061 4 C -0.114 4.114 5 C 0.413 3.587 6 O -0.379 6.379 7 O -0.314 6.314 8 C -0.256 4.256 9 C 0.115 3.885 10 N -0.316 5.316 11 C 0.412 3.588 12 O -0.444 6.444 13 N -0.339 5.339 14 C -0.044 4.044 15 C 0.028 3.972 16 N -0.315 5.315 17 C -0.387 4.387 18 H 0.085 0.915 19 C -0.188 4.188 20 N -0.550 5.550 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.203 1.203 25 C 0.003 3.997 26 C -0.012 4.012 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.273 0.727 31 H 0.206 0.794 32 H 0.248 0.752 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.132 0.868 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.644 16.872 5.229 17.676 hybrid contribution -0.204 -1.328 -0.077 1.346 sum 0.440 15.544 5.152 16.381 Atomic orbital electron populations 1.21989 0.73478 1.05167 1.03997 1.48742 1.06683 1.01920 1.59376 1.77841 1.00423 1.04894 1.22989 1.20654 0.90648 0.92996 1.07061 1.19274 0.86753 0.80418 0.72252 1.90952 1.25613 1.76052 1.45247 1.84641 1.42712 1.18471 1.85559 1.21527 0.96840 0.91874 1.15353 1.17598 0.89921 0.80089 1.00897 1.42192 1.10791 1.01356 1.77231 1.15540 0.84243 0.80570 0.78482 1.90847 1.14723 1.81981 1.56833 1.47286 1.08721 1.03442 1.74433 1.22835 0.78899 0.99354 1.03294 1.21458 0.97465 0.86466 0.91858 1.43888 0.98833 1.03152 1.85604 1.19179 1.11383 0.86413 1.21681 0.91546 1.25354 0.99288 0.97838 0.96342 1.69814 1.18664 1.33120 1.33390 0.86235 0.78378 0.84707 0.77091 1.21311 1.21483 1.20261 1.21362 0.87630 0.95805 0.94890 1.22225 0.91711 0.86841 1.00411 0.90035 0.88257 0.89406 0.72671 0.79399 0.75206 0.91271 0.92630 0.96016 0.86834 0.93282 0.95580 0.91208 0.89491 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.28 59.85 0.68 1.32 16 2 N -0.38 -4.47 4.04 -67.08 -0.27 -4.75 16 3 N -0.23 -3.18 12.61 33.32 0.42 -2.76 16 4 C 0.05 0.74 7.11 -82.94 -0.59 0.15 16 5 C 0.57 7.63 8.34 34.55 0.29 7.92 16 6 O -0.49 -7.72 17.69 -19.26 -0.34 -8.06 16 7 O -0.50 -4.87 13.43 -40.58 -0.55 -5.42 16 8 C -0.22 -3.56 9.41 -39.41 -0.37 -3.93 16 9 C 0.33 4.71 7.66 -152.59 -1.17 3.54 16 10 N -0.66 -8.86 5.33 -15.76 -0.08 -8.95 16 11 C 0.71 11.83 8.25 -86.92 -0.72 11.11 16 12 O -0.57 -10.94 12.90 5.29 0.07 -10.88 16 13 N -0.60 -10.03 2.94 -177.95 -0.52 -10.55 16 14 C 0.08 1.28 6.59 -3.37 -0.02 1.26 16 15 C 0.15 3.23 5.48 -3.37 -0.02 3.21 16 16 N -0.59 -13.55 2.97 -171.77 -0.51 -14.06 16 17 C -0.26 -6.48 9.55 -15.06 -0.14 -6.62 16 18 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 19 C 0.01 0.27 5.31 -17.43 -0.09 0.18 16 20 N -0.91 -24.05 10.66 55.49 0.59 -23.46 16 21 Si 0.91 20.26 29.55 -169.99 -5.02 15.23 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 C 0.13 2.56 6.67 -3.60 -0.02 2.54 16 26 C 0.11 1.91 6.60 -3.60 -0.02 1.89 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.45 7.50 -51.93 -0.39 0.06 16 30 H 0.41 1.76 9.11 45.56 0.42 2.18 16 31 H 0.19 3.40 5.82 -52.48 -0.31 3.09 16 32 H 0.41 4.29 5.44 -40.82 -0.22 4.07 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.68 5.62 -51.93 -0.29 0.39 16 35 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.11 2.65 5.89 -51.93 -0.31 2.34 16 37 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 1.31 7.94 -51.93 -0.41 0.90 16 40 H 0.09 1.45 6.99 -51.93 -0.36 1.09 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -33.30 344.99 -7.19 -40.48 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -3.96 Total: 5.42 kcal Atomic # 6 Polarization: 24.76 SS G_CDS: -2.21 Total: 22.55 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -0.38 Total: -64.53 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.82 Total: -24.36 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.30 -7.19 -40.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608143682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.920 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds