Wall clock time and date at job start Fri Apr 10 2020 18:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40061 * 125.95044 * 2 1 4 4 C 1.31917 * 108.25960 * 179.97438 * 3 2 1 5 5 C 1.47590 * 125.97181 * 180.25850 * 4 3 2 6 6 O 1.21492 * 119.99919 * 179.69625 * 5 4 3 7 7 O 1.34734 * 120.00183 * 359.69661 * 5 4 3 8 8 C 1.41064 * 108.05638 * 359.97438 * 4 3 2 9 9 C 1.35722 * 107.78895 * 0.02562 * 8 4 3 10 10 N 1.39542 * 126.09878 * 180.02562 * 9 8 4 11 11 C 1.34778 * 120.00205 * 359.96587 * 10 9 8 12 12 O 1.21589 * 119.99684 * 354.47565 * 11 10 9 13 13 N 1.34776 * 120.00081 * 174.47195 * 11 10 9 14 14 C 1.46965 * 120.59343 * 5.40542 * 13 11 10 15 15 C 1.53806 * 108.39978 * 124.75909 * 14 13 11 16 16 N 1.46971 * 108.57867 * 49.63190 * 15 14 13 17 17 C 1.36943 * 120.59184 * 124.62891 * 16 15 14 18 18 H 1.07994 * 119.99828 * 216.07979 * 17 16 15 19 19 C 1.38815 * 120.00110 * 36.07478 * 17 16 15 20 20 N 1.31623 * 119.99827 * 356.53203 * 19 17 16 21 21 Si 1.86797 * 120.00081 * 176.52975 * 19 17 16 22 22 H 1.48497 * 109.47008 * 90.00137 * 21 19 17 23 23 H 1.48500 * 109.47177 * 210.00283 * 21 19 17 24 24 H 1.48507 * 109.47107 * 330.00357 * 21 19 17 25 25 C 1.46965 * 118.81398 * 304.64948 * 16 15 14 26 26 C 1.46964 * 120.59352 * 185.68243 * 13 11 10 27 27 H 1.08996 * 109.47319 * 269.99750 * 1 2 3 28 28 H 1.08994 * 109.47229 * 30.00469 * 1 2 3 29 29 H 1.08998 * 109.46962 * 150.00404 * 1 2 3 30 30 H 0.96694 * 117.00138 * 180.02562 * 7 5 4 31 31 H 1.08004 * 126.09984 * 179.97438 * 8 4 3 32 32 H 0.97003 * 120.00114 * 179.97438 * 10 9 8 33 33 H 1.09004 * 109.60630 * 244.53574 * 14 13 11 34 34 H 1.08995 * 109.61165 * 5.04675 * 14 13 11 35 35 H 1.09008 * 109.74069 * 289.85076 * 15 14 13 36 36 H 1.08996 * 109.67708 * 169.38430 * 15 14 13 37 37 H 0.97001 * 120.00049 * 179.97438 * 20 19 17 38 38 H 1.08998 * 109.60564 * 295.47896 * 25 16 15 39 39 H 1.09002 * 109.75054 * 175.05473 * 25 16 15 40 40 H 1.09000 * 109.61103 * 354.94679 * 26 13 11 41 41 H 1.09003 * 109.61013 * 115.28769 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2873 1.1338 0.0000 4 6 3.5441 0.7330 0.0006 5 6 4.7330 1.6075 0.0062 6 8 5.8457 1.1198 0.0117 7 8 4.5843 2.9466 0.0051 8 6 3.5531 -0.6776 0.0015 9 6 2.2634 -1.1005 0.0010 10 7 1.8335 -2.4281 0.0021 11 6 2.7363 -3.4288 0.0032 12 8 3.9217 -3.1782 -0.0981 13 7 2.3250 -4.7073 0.1168 14 6 0.8922 -5.0345 0.1211 15 6 0.6258 -6.0631 -0.9909 16 7 1.6020 -7.1543 -0.8632 17 6 1.1841 -8.4532 -0.7470 18 1 1.7266 -9.1404 -0.1147 19 6 0.0633 -8.8865 -1.4418 20 7 -0.6376 -8.0332 -2.1581 21 14 -0.4504 -10.6806 -1.3602 22 1 -1.3857 -10.8765 -0.2236 23 1 -1.1248 -11.0606 -2.6275 24 1 0.7512 -11.5312 -1.1647 25 6 3.0346 -6.8264 -0.8620 26 6 3.3011 -5.7985 0.2444 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 5.3921 3.4780 0.0085 31 1 4.4298 -1.3084 0.0018 32 1 0.8848 -2.6307 0.0019 33 1 0.6165 -5.4569 1.0875 34 1 0.3103 -4.1321 -0.0659 35 1 0.7341 -5.5876 -1.9658 36 1 -0.3836 -6.4614 -0.8882 37 1 -1.4206 -8.3361 -2.6440 38 1 3.3143 -6.4054 -1.8277 39 1 3.6185 -7.7273 -0.6728 40 1 4.3104 -5.4007 0.1387 41 1 3.1950 -6.2719 1.2205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608143682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:12 Heat of formation + Delta-G solvation = -6.181834 kcal Electronic energy + Delta-G solvation = -27354.130213 eV Core-core repulsion = 23272.094212 eV Total energy + Delta-G solvation = -4082.036001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.87661 -41.44906 -40.79877 -38.64387 -37.17362 -36.30781 -35.66347 -34.32722 -33.18628 -31.81372 -30.43805 -28.58334 -28.52963 -25.74213 -25.26296 -24.54660 -23.24967 -21.94841 -21.75140 -20.47599 -20.00929 -19.10734 -18.73492 -17.94883 -17.41761 -17.18257 -17.09761 -16.70396 -16.62671 -16.12891 -15.73735 -15.44221 -15.22758 -15.17457 -15.01478 -14.63123 -14.47493 -14.31648 -13.67976 -13.43775 -13.36697 -12.98981 -12.79027 -12.69198 -12.47807 -12.33969 -12.25801 -12.17729 -12.07978 -12.00915 -11.92579 -11.68580 -11.21443 -10.54897 -10.27070 -9.97421 -9.32442 -8.53018 -7.87531 -5.45815 -0.06058 0.66246 0.80246 1.43288 1.49405 1.52606 1.59989 1.90750 2.05029 2.09316 2.49864 2.62002 3.22076 3.28928 3.61148 4.01723 4.16636 4.19527 4.25015 4.27083 4.35125 4.37907 4.55764 4.61236 4.63218 4.68907 4.72468 4.78773 4.86821 5.09733 5.24771 5.31233 5.34452 5.48334 5.63796 5.65588 5.73515 5.82403 6.17664 6.44566 6.66154 6.91007 7.16216 7.23393 7.79297 8.34994 9.15016 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.002676 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.911087 B =10460.865899 C =11232.373991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.361 5.361 3 N -0.230 5.230 4 C 0.036 3.964 5 C 0.580 3.420 6 O -0.526 6.526 7 O -0.492 6.492 8 C -0.250 4.250 9 C 0.333 3.667 10 N -0.645 5.645 11 C 0.711 3.289 12 O -0.595 6.595 13 N -0.606 5.606 14 C 0.096 3.904 15 C 0.159 3.841 16 N -0.610 5.610 17 C -0.265 4.265 18 H 0.068 0.932 19 C -0.038 4.038 20 N -0.931 5.931 21 Si 0.966 3.034 22 H -0.281 1.281 23 H -0.297 1.297 24 H -0.273 1.273 25 C 0.131 3.869 26 C 0.123 3.877 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.438 0.562 31 H 0.162 0.838 32 H 0.424 0.576 33 H 0.079 0.921 34 H 0.097 0.903 35 H -0.004 1.004 36 H 0.090 0.910 37 H 0.252 0.748 38 H 0.009 0.991 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 17.318 6.446 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.152 5.152 3 N -0.061 5.061 4 C -0.127 4.127 5 C 0.421 3.579 6 O -0.414 6.414 7 O -0.305 6.305 8 C -0.282 4.282 9 C 0.112 3.888 10 N -0.300 5.300 11 C 0.412 3.588 12 O -0.474 6.474 13 N -0.341 5.341 14 C -0.028 4.028 15 C 0.032 3.968 16 N -0.334 5.334 17 C -0.395 4.395 18 H 0.086 0.914 19 C -0.234 4.234 20 N -0.576 5.576 21 Si 0.794 3.206 22 H -0.208 1.208 23 H -0.223 1.223 24 H -0.198 1.198 25 C 0.005 3.995 26 C -0.002 4.002 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.301 0.699 31 H 0.179 0.821 32 H 0.266 0.734 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.015 0.985 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.636 17.981 6.292 19.061 hybrid contribution 0.164 -1.567 -0.431 1.634 sum -0.472 16.414 5.861 17.436 Atomic orbital electron populations 1.22537 0.70276 1.07075 1.06120 1.49097 1.08154 1.00551 1.57444 1.77784 1.00154 1.05654 1.22534 1.20758 0.91416 0.92761 1.07758 1.19141 0.85903 0.81293 0.71520 1.90937 1.26597 1.76841 1.46976 1.84587 1.44418 1.16865 1.84626 1.21365 0.97097 0.92581 1.17196 1.17455 0.89911 0.80613 1.00819 1.41839 1.11044 1.00573 1.76510 1.15599 0.84213 0.80864 0.78124 1.90858 1.16244 1.82412 1.57855 1.47262 1.08851 1.03452 1.74513 1.22625 0.78963 0.99713 1.01515 1.21264 0.95962 0.86997 0.92540 1.44144 1.00302 1.03084 1.85842 1.19452 1.11139 0.87579 1.21281 0.91440 1.26001 0.99757 1.01045 0.96606 1.69982 1.18949 1.34313 1.34352 0.85300 0.77935 0.80769 0.76555 1.20793 1.22338 1.19795 1.21402 0.86155 0.96845 0.95130 1.22037 0.92086 0.86307 0.99735 0.87754 0.86715 0.87272 0.69871 0.82050 0.73379 0.90309 0.88529 0.98536 0.89212 0.93810 0.97262 0.90631 0.89192 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 11.28 127.77 1.44 2.21 16 2 N -0.36 -7.69 4.04 -366.15 -1.48 -9.17 16 3 N -0.23 -5.92 12.61 -48.49 -0.61 -6.53 16 4 C 0.04 1.05 7.11 42.29 0.30 1.35 16 5 C 0.58 15.24 8.34 70.29 0.59 15.82 16 6 O -0.53 -16.70 17.69 19.86 0.35 -16.35 16 7 O -0.49 -8.75 13.43 -56.44 -0.76 -9.50 16 8 C -0.25 -7.98 9.41 22.38 0.21 -7.76 16 9 C 0.33 8.85 7.66 130.99 1.00 9.85 16 10 N -0.65 -15.87 5.33 -322.03 -1.72 -17.58 16 11 C 0.71 22.78 8.25 179.05 1.48 24.26 16 12 O -0.60 -22.98 12.90 -4.00 -0.05 -23.03 16 13 N -0.61 -19.21 2.94 -835.17 -2.46 -21.67 16 14 C 0.10 2.83 6.59 86.56 0.57 3.40 16 15 C 0.16 6.61 5.48 86.56 0.47 7.08 16 16 N -0.61 -27.90 2.97 -697.35 -2.07 -29.97 16 17 C -0.26 -13.29 9.55 84.03 0.80 -12.49 16 18 H 0.07 3.31 7.83 -2.91 -0.02 3.29 16 19 C -0.04 -1.95 5.31 84.86 0.45 -1.50 16 20 N -0.93 -49.98 10.66 21.65 0.23 -49.75 16 21 Si 0.97 41.63 29.55 68.60 2.03 43.66 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.30 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 C 0.13 5.15 6.67 86.41 0.58 5.72 16 26 C 0.12 4.06 6.60 86.41 0.57 4.63 16 27 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 0.65 7.50 -2.39 -0.02 0.63 16 30 H 0.44 2.90 9.11 -74.06 -0.67 2.22 16 31 H 0.16 6.09 5.82 -2.91 -0.02 6.07 16 32 H 0.42 7.42 5.44 -92.71 -0.50 6.92 16 33 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.10 2.03 5.62 -2.39 -0.01 2.02 16 35 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 36 H 0.09 4.21 5.89 -2.39 -0.01 4.19 16 37 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.08 2.82 7.94 -2.39 -0.02 2.80 16 40 H 0.09 2.95 6.99 -2.39 -0.02 2.94 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -73.59 344.99 1.86 -71.72 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -0.07 Total: 15.58 kcal Atomic # 6 Polarization: 44.11 SS G_CDS: 8.46 Total: 52.57 kcal Atomic # 7 Polarization: -126.56 SS G_CDS: -8.10 Total: -134.67 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -0.46 Total: -48.88 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -73.59 1.86 -71.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608143682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.542 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds