Wall clock time and date at job start Fri Apr 10 2020 18:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86806 * 119.99699 * 2 1 4 4 H 1.48492 * 109.47048 * 270.92289 * 3 2 1 5 5 H 1.48503 * 109.46946 * 30.92054 * 3 2 1 6 6 H 1.48505 * 109.47105 * 150.92188 * 3 2 1 7 7 C 1.38946 * 120.00438 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99686 * 3.35977 * 7 2 1 9 9 N 1.37096 * 120.00145 * 183.35041 * 7 2 1 10 10 C 1.34775 * 119.99904 * 185.04240 * 9 7 2 11 11 O 1.21294 * 119.99922 * 354.84498 * 10 9 7 12 12 C 1.50700 * 120.00235 * 174.84315 * 10 9 7 13 13 N 1.46899 * 109.47633 * 185.79383 * 12 10 9 14 14 C 1.46896 * 111.00143 * 178.84686 * 13 12 10 15 15 C 1.53000 * 115.55049 * 296.00639 * 14 13 12 16 16 N 1.46503 * 109.46949 * 323.65423 * 15 14 13 17 17 C 1.34775 * 119.99952 * 183.23594 * 16 15 14 18 18 O 1.21288 * 119.99835 * 5.07506 * 17 16 15 19 19 C 1.50698 * 120.00255 * 185.07454 * 17 16 15 20 20 C 1.53004 * 119.80407 * 257.70987 * 19 17 16 21 21 C 1.53009 * 60.64902 * 247.68403 * 20 19 17 22 22 H 1.09005 * 119.80530 * 112.31438 * 21 20 19 23 23 C 1.54475 * 118.54077 * 269.86730 * 21 20 19 24 24 O 1.44428 * 104.80139 * 86.83616 * 23 21 20 25 25 C 1.44428 * 105.26987 * 319.48173 * 24 23 21 26 26 C 1.53006 * 117.49949 * 150.33480 * 14 13 12 27 27 C 1.52997 * 117.49960 * 81.67640 * 14 13 12 28 28 H 0.97005 * 120.00402 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00159 * 5.04312 * 9 7 2 30 30 H 1.09002 * 109.46959 * 65.79001 * 12 10 9 31 31 H 1.09003 * 109.46720 * 305.79709 * 12 10 9 32 32 H 1.00896 * 110.99599 * 54.88666 * 13 12 10 33 33 H 1.08998 * 109.47261 * 83.65843 * 15 14 13 34 34 H 1.09006 * 109.46781 * 203.65811 * 15 14 13 35 35 H 0.97001 * 119.99946 * 3.23845 * 16 15 14 36 36 H 1.08995 * 117.43481 * 355.35954 * 20 19 17 37 37 H 1.08993 * 117.43285 * 140.01449 * 20 19 17 38 38 H 1.09008 * 110.37154 * 205.66166 * 23 21 20 39 39 H 1.08999 * 110.37738 * 328.00077 * 23 21 20 40 40 H 1.08992 * 110.37588 * 281.68049 * 25 24 23 41 41 H 1.09000 * 110.36852 * 159.34584 * 25 24 23 42 42 H 1.09000 * 117.49730 * 0.02562 * 26 14 13 43 43 H 1.08991 * 117.49954 * 145.01653 * 26 14 13 44 44 H 1.08995 * 117.50156 * 214.97936 * 27 14 13 45 45 H 1.09004 * 117.49983 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4759 2.0578 -1.3998 5 1 1.4552 2.6470 0.7194 6 1 3.5552 1.4348 0.6805 7 6 2.0089 -1.2033 0.0005 8 1 1.4703 -2.1378 -0.0539 9 7 3.3781 -1.2042 0.0699 10 6 4.0572 -2.3639 -0.0318 11 8 3.4559 -3.4156 -0.0908 12 6 5.5636 -2.3539 -0.0725 13 7 6.0558 -3.7150 -0.3238 14 6 7.5227 -3.7392 -0.3973 15 6 8.1386 -2.9484 -1.5532 16 7 7.2832 -3.0672 -2.7366 17 6 7.6612 -2.5032 -3.9008 18 8 8.7501 -1.9771 -3.9943 19 6 6.7312 -2.5261 -5.0863 20 6 6.9670 -3.5278 -6.2186 21 6 7.1628 -2.0341 -6.4859 22 1 8.1616 -1.6457 -6.6856 23 6 5.9552 -1.2086 -6.9825 24 8 5.2728 -0.7927 -5.7794 25 6 5.3139 -1.9398 -4.9029 26 6 8.2307 -5.0246 0.0357 27 6 8.2956 -3.7786 0.9225 28 1 -0.4851 0.8401 -0.0004 29 1 3.8581 -0.3702 0.1923 30 1 5.9505 -1.9982 0.8825 31 1 5.9011 -1.6924 -0.8703 32 1 5.6453 -4.0989 -1.1617 33 1 8.2245 -1.8992 -1.2707 34 1 9.1282 -3.3461 -1.7788 35 1 6.4446 -3.5517 -2.6822 36 1 7.8607 -4.1491 -6.1614 37 1 6.0909 -4.0057 -6.6568 38 1 6.2954 -0.3394 -7.5455 39 1 5.2997 -1.8265 -7.5962 40 1 4.5601 -2.6698 -5.1976 41 1 5.1614 -1.6324 -3.8683 42 1 7.6079 -5.8525 0.3747 43 1 9.1354 -5.3067 -0.5027 44 1 9.2431 -3.2416 0.9672 45 1 7.7156 -3.7862 1.8454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670785316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:21 Heat of formation + Delta-G solvation = -66.769270 kcal Electronic energy + Delta-G solvation = -28056.122432 eV Core-core repulsion = 24074.999505 eV Total energy + Delta-G solvation = -3981.122926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.99448 -40.68355 -40.00354 -39.02812 -36.06686 -35.74776 -35.35066 -34.17401 -33.69450 -30.27576 -28.59741 -28.03774 -26.49765 -25.73605 -24.14372 -23.28229 -22.13057 -21.33495 -21.07374 -20.44715 -20.26802 -18.83478 -17.93553 -17.40045 -17.19496 -16.88157 -16.79354 -16.44650 -16.19787 -16.05186 -15.67103 -15.51970 -15.25811 -14.94791 -14.90411 -14.45937 -14.35396 -14.09669 -14.05133 -13.71469 -13.62691 -13.09353 -13.04582 -12.85967 -12.41526 -12.32586 -12.28236 -12.01304 -11.91803 -11.60712 -11.54231 -11.38356 -11.10885 -10.88013 -10.66913 -10.46975 -10.24984 -10.22427 -9.58162 -8.43007 -6.02910 1.26030 1.30055 1.33215 1.39955 1.84578 1.90735 2.19359 2.25365 2.54962 2.81801 2.93929 3.13039 3.22367 3.26872 3.34444 3.52341 3.56884 3.87391 3.95987 3.99216 4.05321 4.13650 4.27700 4.32050 4.43803 4.47437 4.55764 4.61664 4.63370 4.64958 4.65287 4.70992 4.80542 4.83682 5.04884 5.08170 5.19288 5.35763 5.50686 5.61565 5.83297 5.97107 6.18080 6.30288 6.57236 6.86373 6.97554 7.37646 7.91590 8.74201 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.008636 B = 0.004751 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.388524 B = 5892.319734 C = 8206.100058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.234 1.234 7 C -0.324 4.324 8 H 0.061 0.939 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.606 6.606 12 C 0.065 3.935 13 N -0.633 5.633 14 C 0.003 3.997 15 C 0.135 3.865 16 N -0.715 5.715 17 C 0.564 3.436 18 O -0.573 6.573 19 C -0.231 4.231 20 C -0.081 4.081 21 C -0.156 4.156 22 H 0.126 0.874 23 C 0.066 3.934 24 O -0.397 6.397 25 C 0.086 3.914 26 C -0.140 4.140 27 C -0.142 4.142 28 H 0.279 0.721 29 H 0.387 0.613 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.344 0.656 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.404 0.596 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.875 -5.099 -10.159 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.158 1.158 7 C -0.453 4.453 8 H 0.079 0.921 9 N -0.233 5.233 10 C 0.239 3.761 11 O -0.490 6.490 12 C -0.068 4.068 13 N -0.266 5.266 14 C -0.090 4.090 15 C 0.009 3.991 16 N -0.367 5.367 17 C 0.351 3.649 18 O -0.452 6.452 19 C -0.235 4.235 20 C -0.118 4.118 21 C -0.175 4.175 22 H 0.144 0.856 23 C -0.009 4.009 24 O -0.316 6.316 25 C 0.009 3.991 26 C -0.177 4.177 27 C -0.180 4.180 28 H 0.089 0.911 29 H 0.223 0.777 30 H 0.129 0.871 31 H 0.082 0.918 32 H 0.165 0.835 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.241 0.759 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 20.894 -5.272 -9.527 23.561 hybrid contribution -0.487 1.193 -0.476 1.374 sum 20.406 -4.079 -10.004 23.090 Atomic orbital electron populations 1.69781 1.07920 1.29138 1.50200 1.25965 0.96323 1.02220 0.96205 0.85487 0.79543 0.77672 0.79602 1.18904 1.19783 1.15776 1.18987 0.81465 0.94956 1.49928 0.92124 1.42094 1.06118 1.08472 1.66661 1.20789 0.90489 0.83442 0.81423 1.90557 1.71452 1.32057 1.54954 1.21566 0.89940 0.91557 1.03697 1.59976 1.03552 1.19443 1.43599 1.21681 0.86361 1.04030 0.96906 1.21373 0.94227 1.00291 0.83211 1.45910 1.25277 1.55689 1.09865 1.19356 0.85741 0.76628 0.83211 1.90677 1.23797 1.46521 1.84243 1.23282 0.97231 1.12567 0.90395 1.23339 1.05277 0.90566 0.92628 1.24412 1.01544 0.97655 0.93863 0.85621 1.23214 0.90855 0.99679 0.87192 1.89224 1.78123 1.36075 1.28173 1.22817 0.92514 0.88246 0.95533 1.23230 1.01263 0.91201 1.01998 1.23162 1.01020 1.00981 0.92852 0.91144 0.77707 0.87071 0.91838 0.83468 0.91717 0.89741 0.75888 0.86278 0.85076 0.87052 0.89269 0.89154 0.90187 0.88411 0.86629 0.86433 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 13.96 21.66 0.30 -55.35 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 0.96 39.60 27.89 68.60 1.91 41.51 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.23 -8.22 6.32 99.48 0.63 -7.59 16 7 C -0.32 -18.67 10.16 84.04 0.85 -17.82 16 8 H 0.06 4.13 7.40 -2.91 -0.02 4.11 16 9 N -0.59 -27.54 5.07 -306.99 -1.56 -29.09 16 10 C 0.45 19.62 7.79 87.66 0.68 20.30 16 11 O -0.61 -31.95 15.85 -3.07 -0.05 -32.00 16 12 C 0.06 1.93 6.03 85.56 0.52 2.45 16 13 N -0.63 -16.90 6.00 -474.15 -2.85 -19.75 16 14 C 0.00 0.05 2.10 3.53 0.01 0.06 16 15 C 0.13 2.69 5.03 86.38 0.43 3.12 16 16 N -0.72 -15.41 5.29 -463.05 -2.45 -17.86 16 17 C 0.56 14.16 7.38 87.66 0.65 14.81 16 18 O -0.57 -18.10 16.86 -3.05 -0.05 -18.15 16 19 C -0.23 -4.86 2.82 -51.91 -0.15 -5.00 16 20 C -0.08 -1.11 9.91 30.60 0.30 -0.81 16 21 C -0.16 -2.79 6.89 -9.78 -0.07 -2.86 16 22 H 0.13 2.36 8.14 -2.38 -0.02 2.34 16 23 C 0.07 1.19 7.45 72.48 0.54 1.73 16 24 O -0.40 -10.76 11.65 -148.98 -1.74 -12.49 16 25 C 0.09 2.06 7.27 72.48 0.53 2.59 16 26 C -0.14 -2.22 10.11 30.62 0.31 -1.91 16 27 C -0.14 -2.32 10.18 30.62 0.31 -2.00 16 28 H 0.28 15.32 8.31 -92.70 -0.77 14.55 16 29 H 0.39 15.41 5.71 -92.71 -0.53 14.88 16 30 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.06 1.72 7.33 -2.39 -0.02 1.70 16 32 H 0.34 9.52 6.70 -89.70 -0.60 8.92 16 33 H 0.06 1.40 8.10 -2.39 -0.02 1.39 16 34 H 0.08 1.60 7.90 -2.38 -0.02 1.58 16 35 H 0.40 8.31 6.59 -92.71 -0.61 7.70 16 36 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 2.19 8.02 -2.39 -0.02 2.17 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.12 1.40 8.06 -2.39 -0.02 1.39 16 44 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -78.82 377.23 -1.86 -80.68 By element: Atomic # 1 Polarization: 48.59 SS G_CDS: -0.78 Total: 47.81 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 5.39 Total: 14.69 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.55 Total: -122.05 kcal Atomic # 8 Polarization: -60.81 SS G_CDS: -1.84 Total: -62.64 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.91 Total: 41.51 kcal Total: -78.82 -1.86 -80.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670785316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.911 kcal (2) G-P(sol) polarization free energy of solvation -78.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds