Wall clock time and date at job start Fri Apr 10 2020 18:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.47062 * 2 1 4 4 N 1.46497 * 109.47407 * 239.99574 * 2 1 3 5 5 C 1.36937 * 119.99860 * 84.99774 * 4 2 1 6 6 H 1.07997 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99817 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99925 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00168 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47159 * 90.00026 * 9 7 5 11 11 H 1.48498 * 109.47106 * 209.99786 * 9 7 5 12 12 H 1.48502 * 109.47116 * 330.00076 * 9 7 5 13 13 C 1.52997 * 109.47012 * 119.99045 * 2 1 3 14 14 H 1.09003 * 110.88446 * 63.89076 * 13 2 1 15 15 C 1.55153 * 111.00822 * 300.00464 * 13 2 1 16 16 C 1.54325 * 102.94051 * 206.38373 * 15 13 2 17 17 N 1.47017 * 107.27414 * 22.19241 * 16 15 13 18 18 C 1.34777 * 125.64923 * 181.02086 * 17 16 15 19 19 O 1.21580 * 119.99915 * 180.02562 * 18 17 16 20 20 C 1.47615 * 119.99924 * 0.02562 * 18 17 16 21 21 N 1.33055 * 120.53023 * 359.97438 * 20 18 17 22 22 N 1.28722 * 120.36677 * 179.74066 * 21 20 18 23 23 C 1.32940 * 121.54889 * 0.55917 * 22 21 20 24 24 O 1.35292 * 119.46998 * 179.70392 * 23 22 21 25 25 N 1.32464 * 121.06604 * 359.43400 * 23 22 21 26 26 C 1.32868 * 119.51319 * 0.27233 * 25 23 22 27 27 O 1.35292 * 120.71935 * 179.97438 * 26 25 23 28 28 C 1.47420 * 108.70038 * 1.28834 * 17 16 15 29 29 H 1.08994 * 109.46973 * 60.00616 * 1 2 3 30 30 H 1.08997 * 109.46539 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47122 * 300.00324 * 1 2 3 32 32 H 0.97003 * 119.99813 * 264.99965 * 4 2 1 33 33 H 0.97003 * 119.99658 * 180.02562 * 8 7 5 34 34 H 1.09000 * 110.72190 * 88.02300 * 15 13 2 35 35 H 1.09001 * 110.87508 * 324.81817 * 15 13 2 36 36 H 1.09004 * 109.88109 * 262.77083 * 16 15 13 37 37 H 1.09002 * 110.01224 * 141.68589 * 16 15 13 38 38 H 0.96700 * 114.00323 * 269.73546 * 24 23 22 39 39 H 0.96696 * 113.99435 * 89.99732 * 27 26 25 40 40 H 1.09001 * 110.37315 * 94.48201 * 28 17 16 41 41 H 1.09008 * 110.36760 * 216.80212 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6125 -0.6619 -3.5089 8 7 2.7386 -0.0053 -4.6426 9 14 3.0568 -2.4743 -3.4248 10 1 1.8598 -3.2928 -3.7448 11 1 4.1327 -2.7662 -4.4059 12 1 3.5312 -2.8048 -2.0570 13 6 2.0400 -0.7210 1.2493 14 1 1.7470 -1.7709 1.2389 15 6 1.5425 -0.0175 2.5396 16 6 2.6244 -0.3897 3.5753 17 7 3.8422 -0.7375 2.8287 18 6 5.0090 -1.1380 3.3716 19 8 5.9549 -1.4004 2.6542 20 6 5.1384 -1.2581 4.8371 21 7 4.1101 -0.9732 5.6320 22 7 4.2249 -1.0838 6.9094 23 6 5.3642 -1.4713 7.4744 24 8 5.4399 -1.5674 8.8218 25 7 6.4249 -1.7698 6.7392 26 6 6.3517 -1.6756 5.4159 27 8 7.4202 -1.9740 4.6416 28 6 3.5776 -0.5695 1.3882 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2492 -1.6318 -1.1524 33 1 3.0620 -0.4626 -5.4345 34 1 0.5701 -0.4070 2.8408 35 1 1.4974 1.0626 2.4003 36 1 2.2943 -1.2448 4.1652 37 1 2.8210 0.4588 4.2307 38 1 5.7296 -0.7548 9.2585 39 1 7.4634 -2.9015 4.3716 40 1 3.8951 0.4192 1.0568 41 1 4.0880 -1.3442 0.8158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672214795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:27 Heat of formation + Delta-G solvation = -33.616148 kcal Electronic energy + Delta-G solvation = -27372.606502 eV Core-core repulsion = 23289.380860 eV Total energy + Delta-G solvation = -4083.225643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.39468 -41.18418 -39.74905 -38.90548 -38.85677 -36.91827 -35.63765 -34.38115 -33.34809 -32.19031 -30.30984 -29.70611 -27.54067 -26.37880 -25.62449 -24.57867 -22.77565 -21.55235 -21.28836 -21.20963 -20.69829 -19.70377 -19.58578 -18.48238 -17.67861 -17.33860 -17.06139 -16.79147 -16.53781 -15.93737 -15.52241 -15.17526 -14.93618 -14.58372 -14.43562 -14.30571 -14.12938 -13.87622 -13.85722 -13.61442 -13.55920 -13.25779 -12.91099 -12.88228 -12.76521 -12.52302 -12.43387 -11.99389 -11.89460 -11.71747 -11.68290 -11.40913 -11.31624 -11.30175 -10.95224 -10.72805 -9.78950 -9.26493 -7.98183 -5.29695 -1.30696 -1.02712 1.17563 1.26755 1.39139 1.41860 1.48616 1.61011 1.71610 2.02371 2.35592 2.51290 3.05174 3.22057 3.33732 3.44954 3.63011 3.68140 3.81320 4.03003 4.16429 4.36498 4.45084 4.54595 4.65474 4.75424 4.86117 4.95707 5.01265 5.06178 5.12525 5.15969 5.24161 5.32900 5.44820 5.66457 5.83939 6.12514 6.18403 6.24645 6.26896 6.68771 6.83920 7.13609 7.91179 8.07866 9.23721 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020478 B = 0.003034 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.969791 B = 9225.014147 C =10254.723826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.183 3.817 3 H 0.047 0.953 4 N -0.753 5.753 5 C -0.216 4.216 6 H 0.059 0.941 7 C -0.067 4.067 8 N -0.987 5.987 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.302 1.302 12 H -0.254 1.254 13 C -0.096 4.096 14 H 0.089 0.911 15 C -0.114 4.114 16 C 0.107 3.893 17 N -0.594 5.594 18 C 0.585 3.415 19 O -0.544 6.544 20 C -0.057 4.057 21 N -0.102 5.102 22 N -0.292 5.292 23 C 0.492 3.508 24 O -0.446 6.446 25 N -0.517 5.517 26 C 0.429 3.571 27 O -0.451 6.451 28 C 0.118 3.882 29 H 0.029 0.971 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.363 0.637 33 H 0.255 0.745 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.446 0.554 39 H 0.440 0.560 40 H 0.066 0.934 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 -3.524 30.137 30.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.075 3.925 3 H 0.066 0.934 4 N -0.396 5.396 5 C -0.348 4.348 6 H 0.077 0.923 7 C -0.258 4.258 8 N -0.638 5.638 9 Si 0.777 3.223 10 H -0.205 1.205 11 H -0.229 1.229 12 H -0.178 1.178 13 C -0.116 4.116 14 H 0.108 0.892 15 C -0.152 4.152 16 C -0.015 4.015 17 N -0.325 5.325 18 C 0.370 3.630 19 O -0.421 6.421 20 C -0.209 4.209 21 N 0.039 4.961 22 N -0.156 5.156 23 C 0.188 3.812 24 O -0.253 6.253 25 N -0.261 5.261 26 C 0.232 3.768 27 O -0.262 6.262 28 C -0.004 4.004 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.196 0.804 33 H 0.064 0.936 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.314 0.686 39 H 0.308 0.692 40 H 0.084 0.916 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.597 -3.319 30.398 30.620 hybrid contribution 1.505 -1.145 -1.210 2.245 sum 3.103 -4.464 29.188 29.690 Atomic orbital electron populations 1.22270 0.96525 1.01538 1.01174 1.20380 0.93380 0.94924 0.83799 0.93442 1.42857 1.79974 1.09598 1.07182 1.19006 1.34172 0.94422 0.87166 0.92293 1.25425 1.02859 1.02075 0.95400 1.69879 1.55238 1.37528 1.01175 0.85494 0.77506 0.81469 0.77818 1.20533 1.22950 1.17848 1.22599 0.92270 1.01273 0.95454 0.89227 1.22776 0.99013 1.01999 0.91453 1.22432 0.82598 1.02027 0.94400 1.48467 1.11817 1.63319 1.08912 1.16875 0.82432 0.78807 0.84921 1.90882 1.38422 1.51582 1.61246 1.23669 0.93159 1.06754 0.97311 1.74184 1.22172 1.02760 0.97029 1.73898 1.22846 1.14906 1.03911 1.21983 0.84576 0.86387 0.88291 1.84668 1.88854 1.42751 1.08980 1.68321 1.32415 1.19074 1.06286 1.19879 0.84775 0.86377 0.85802 1.84637 1.40769 1.35949 1.64859 1.22300 0.97165 1.01464 0.79511 0.95212 0.92967 0.89883 0.80421 0.93622 0.86824 0.89254 0.89360 0.89530 0.68632 0.69210 0.91591 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 9.27 71.98 0.67 -3.82 16 2 C 0.18 6.01 2.43 44.99 0.11 6.12 16 3 H 0.05 1.68 8.01 -2.38 -0.02 1.66 16 4 N -0.75 -32.98 4.78 -322.94 -1.54 -34.52 16 5 C -0.22 -11.96 10.41 84.03 0.87 -11.09 16 6 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 7 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 8 N -0.99 -63.51 13.97 21.65 0.30 -63.21 16 9 Si 0.95 45.86 27.74 68.60 1.90 47.76 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 12 H -0.25 -11.13 6.52 99.48 0.65 -10.49 16 13 C -0.10 -2.41 2.67 -9.33 -0.02 -2.43 16 14 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.11 -1.91 5.28 31.78 0.17 -1.74 16 16 C 0.11 1.90 5.41 86.73 0.47 2.37 16 17 N -0.59 -14.73 3.32 -815.01 -2.71 -17.44 16 18 C 0.59 15.62 7.83 86.72 0.68 16.30 16 19 O -0.54 -17.90 15.52 16.46 0.26 -17.64 16 20 C -0.06 -1.21 6.81 42.05 0.29 -0.93 16 21 N -0.10 -1.97 8.23 -48.10 -0.40 -2.37 16 22 N -0.29 -5.23 11.60 -174.23 -2.02 -7.25 16 23 C 0.49 7.81 8.81 180.34 1.59 9.40 16 24 O -0.45 -4.43 13.63 -85.78 -1.17 -5.59 16 25 N -0.52 -9.45 10.57 -424.97 -4.49 -13.95 16 26 C 0.43 8.47 7.85 85.15 0.67 9.14 16 27 O -0.45 -8.48 11.76 -65.35 -0.77 -9.24 16 28 C 0.12 3.45 6.24 86.93 0.54 3.99 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.73 7.28 -2.39 -0.02 1.71 16 32 H 0.36 15.55 5.66 -92.71 -0.52 15.02 16 33 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.11 1.34 8.11 -2.39 -0.02 1.32 16 35 H 0.09 1.41 8.04 -2.39 -0.02 1.39 16 36 H 0.09 1.41 7.43 -2.38 -0.02 1.39 16 37 H 0.09 1.40 7.55 -2.39 -0.02 1.38 16 38 H 0.45 -0.69 9.06 -74.06 -0.67 -1.36 16 39 H 0.44 4.28 9.06 -74.06 -0.67 3.61 16 40 H 0.07 2.11 7.99 -2.39 -0.02 2.09 16 41 H 0.06 2.02 8.04 -2.38 -0.02 2.00 16 Total: -1.00 -78.54 347.38 -4.95 -83.50 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.81 Total: 16.09 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 6.49 Total: 23.88 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -10.86 Total: -138.75 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.68 Total: -32.48 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Total: -78.54 -4.95 -83.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672214795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.880 kcal (2) G-P(sol) polarization free energy of solvation -78.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds