Wall clock time and date at job start Fri Apr 10 2020 18:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47039 * 2 1 4 4 N 1.46494 * 109.46826 * 120.00434 * 2 1 3 5 5 C 1.36939 * 119.99773 * 274.99240 * 4 2 1 6 6 H 1.08002 * 120.00311 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99719 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00170 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99873 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47226 * 59.99498 * 9 7 5 11 11 H 1.48499 * 109.47285 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47123 * 299.99567 * 9 7 5 13 13 C 1.53003 * 109.46559 * 240.00083 * 2 1 3 14 14 H 1.08998 * 110.88634 * 302.42735 * 13 2 1 15 15 C 1.55162 * 111.00484 * 66.35400 * 13 2 1 16 16 C 1.54329 * 103.01863 * 153.37624 * 15 13 2 17 17 N 1.47018 * 107.26956 * 338.14129 * 16 15 13 18 18 C 1.34781 * 125.64787 * 178.85257 * 17 16 15 19 19 O 1.21578 * 119.99570 * 179.69389 * 18 17 16 20 20 C 1.47612 * 119.99852 * 359.68648 * 18 17 16 21 21 N 1.33053 * 120.53581 * 0.02569 * 20 18 17 22 22 N 1.28707 * 120.37370 * 179.97438 * 21 20 18 23 23 C 1.32949 * 121.55054 * 0.02562 * 22 21 20 24 24 O 1.35296 * 119.46832 * 180.02562 * 23 22 21 25 25 N 1.32461 * 121.06089 * 359.97438 * 23 22 21 26 26 C 1.32864 * 119.51612 * 0.02562 * 25 23 22 27 27 O 1.35284 * 120.71858 * 180.02562 * 26 25 23 28 28 C 1.47423 * 108.70041 * 358.58181 * 17 16 15 29 29 H 1.09002 * 109.47023 * 59.99621 * 1 2 3 30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46986 * 300.00265 * 1 2 3 32 32 H 0.97001 * 120.00351 * 95.00098 * 4 2 1 33 33 H 0.97000 * 120.00034 * 180.02562 * 8 7 5 34 34 H 1.09003 * 110.71771 * 271.93584 * 15 13 2 35 35 H 1.09004 * 110.71733 * 35.03233 * 15 13 2 36 36 H 1.09007 * 109.99078 * 218.66168 * 16 15 13 37 37 H 1.09007 * 109.77766 * 97.49744 * 16 15 13 38 38 H 0.96707 * 113.99445 * 269.99720 * 24 23 22 39 39 H 0.96703 * 113.99919 * 89.99661 * 27 26 25 40 40 H 1.09010 * 110.36499 * 143.19627 * 28 17 16 41 41 H 1.08995 * 110.36962 * 265.40661 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6123 -0.6619 3.5089 8 7 2.9252 -1.9390 3.4498 9 14 2.7902 0.2698 5.1183 10 1 1.4675 0.8058 5.5288 11 1 3.2991 -0.6487 6.1683 12 1 3.7448 1.3927 4.9372 13 6 2.0399 -0.7213 -1.2493 14 1 1.6545 -1.7399 -1.2944 15 6 1.6775 0.0689 -2.5345 16 6 2.7786 -0.3588 -3.5277 17 7 3.9163 -0.8465 -2.7345 18 6 5.0706 -1.3322 -3.2328 19 8 5.9493 -1.7038 -2.4792 20 6 5.2677 -1.4131 -4.6935 21 7 4.3133 -1.0091 -5.5278 22 7 4.4887 -1.0806 -6.8009 23 6 5.6158 -1.5553 -7.3223 24 8 5.7554 -1.6110 -8.6668 25 7 6.6045 -1.9737 -6.5465 26 6 6.4686 -1.9190 -5.2259 27 8 7.4630 -2.3394 -4.4108 28 6 3.5880 -0.7103 -1.3038 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6319 1.1525 33 1 3.2484 -2.3963 4.2418 34 1 0.6920 -0.2201 -2.8998 35 1 1.7200 1.1427 -2.3519 36 1 3.0868 0.4942 -4.1324 37 1 2.4059 -1.1563 -4.1706 38 1 5.4523 -2.4411 -9.0597 39 1 8.0951 -1.6474 -4.1723 40 1 3.9934 -1.5505 -0.7398 41 1 3.9764 0.2303 -0.9133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672214796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:30 Heat of formation + Delta-G solvation = -3.599740 kcal Electronic energy + Delta-G solvation = -27302.452740 eV Core-core repulsion = 23220.528706 eV Total energy + Delta-G solvation = -4081.924033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.55266 -40.06623 -38.88066 -38.14743 -37.68066 -35.26473 -34.79763 -32.80311 -32.11002 -30.49286 -28.65517 -28.21025 -26.64038 -25.49500 -23.96803 -23.49046 -21.54071 -20.54838 -20.49564 -19.79009 -19.65628 -18.95971 -17.63617 -16.98278 -16.82079 -16.28554 -15.94963 -15.76167 -14.94287 -14.49740 -14.22000 -13.84953 -13.70593 -13.55700 -13.37740 -13.07400 -12.90419 -12.72246 -12.67824 -12.18349 -12.08951 -12.03403 -11.94906 -11.50449 -11.32943 -10.87981 -10.74830 -10.60198 -10.55959 -10.46868 -10.23614 -10.22849 -9.89564 -9.87156 -9.61510 -8.90522 -8.62477 -6.96125 -5.75069 -3.04290 -0.47409 -0.18858 1.98327 2.17858 2.51790 2.65642 2.98748 3.28221 3.44899 3.49549 3.50584 3.92040 4.05265 4.37862 4.57943 4.71436 4.83021 4.94101 5.05081 5.39935 5.56142 5.58240 5.74783 5.88294 5.91587 5.92702 5.95086 6.09924 6.15419 6.22773 6.30198 6.38392 6.54239 6.57793 6.62861 6.75032 6.84923 7.07317 7.36880 7.60968 7.70539 7.89941 8.42939 9.54302 10.10878 10.45266 11.47303 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021834 B = 0.002830 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.119301 B = 9892.649268 C =10938.516858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.127 4.127 16 C 0.107 3.893 17 N -0.593 5.593 18 C 0.585 3.415 19 O -0.507 6.507 20 C -0.044 4.044 21 N -0.109 5.109 22 N -0.286 5.286 23 C 0.478 3.522 24 O -0.448 6.448 25 N -0.510 5.510 26 C 0.422 3.578 27 O -0.440 6.440 28 C 0.120 3.880 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.384 0.616 33 H 0.256 0.744 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.422 0.578 39 H 0.424 0.576 40 H 0.089 0.911 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.805 1.554 -23.316 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.165 4.165 16 C -0.016 4.016 17 N -0.326 5.326 18 C 0.368 3.632 19 O -0.382 6.382 20 C -0.197 4.197 21 N 0.032 4.968 22 N -0.148 5.148 23 C 0.173 3.827 24 O -0.250 6.250 25 N -0.253 5.253 26 C 0.224 3.776 27 O -0.248 6.248 28 C -0.001 4.001 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.284 0.716 39 H 0.288 0.712 40 H 0.107 0.893 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.723 1.725 -23.508 23.728 hybrid contribution 0.955 -0.280 1.132 1.507 sum 3.678 1.446 -22.376 22.722 Atomic orbital electron populations 1.22437 0.99024 1.00917 1.00030 1.20158 0.91969 0.95149 0.85257 0.93229 1.42420 1.78190 1.10724 1.05278 1.19148 1.36753 0.93800 0.87322 0.91280 1.24726 1.02124 0.95935 0.98002 1.69643 1.50686 1.08624 1.28996 0.86307 0.77713 0.78633 0.83740 1.21361 1.21764 1.21302 1.22694 0.93659 1.00525 0.95363 0.89949 1.22750 0.97959 1.01075 0.94730 1.22244 0.85927 0.99559 0.93884 1.48452 1.14620 1.59803 1.09689 1.16593 0.82629 0.79755 0.84204 1.90914 1.41492 1.48269 1.57487 1.24125 0.95208 1.01660 0.98711 1.74251 1.21862 1.04740 0.95916 1.73888 1.18746 1.16607 1.05539 1.21895 0.84845 0.88911 0.87042 1.84698 1.85480 1.43376 1.11471 1.68197 1.33702 1.18182 1.05269 1.19902 0.88698 0.83493 0.85466 1.84685 1.39056 1.38899 1.62149 1.22411 0.95611 1.03606 0.78472 0.94326 0.93507 0.92765 0.78252 0.93456 0.89848 0.90299 0.90744 0.90676 0.71627 0.71215 0.89303 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.34 37.16 0.35 -2.36 16 2 C 0.18 3.33 2.41 -67.93 -0.16 3.16 16 3 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 4 N -0.72 -17.10 4.82 -53.43 -0.26 -17.36 16 5 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 6 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 9 Si 0.90 22.16 29.55 -169.99 -5.02 17.14 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C -0.10 -1.51 2.63 -88.47 -0.23 -1.74 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.13 -1.41 5.59 -24.89 -0.14 -1.55 16 16 C 0.11 1.20 5.41 -3.06 -0.02 1.18 16 17 N -0.59 -8.30 3.33 -171.71 -0.57 -8.87 16 18 C 0.59 8.50 7.83 -12.43 -0.10 8.40 16 19 O -0.51 -8.75 15.52 -16.07 -0.25 -9.00 16 20 C -0.04 -0.53 6.81 -82.56 -0.56 -1.10 16 21 N -0.11 -1.25 8.24 33.45 0.28 -0.97 16 22 N -0.29 -3.07 11.60 29.21 0.34 -2.73 16 23 C 0.48 4.63 8.81 -90.58 -0.80 3.83 16 24 O -0.45 -3.08 13.63 -17.58 -0.24 -3.32 16 25 N -0.51 -5.42 10.57 -14.33 -0.15 -5.57 16 26 C 0.42 4.69 7.85 -16.15 -0.13 4.56 16 27 O -0.44 -4.56 11.76 -38.91 -0.46 -5.02 16 28 C 0.12 1.93 6.08 -2.53 -0.02 1.91 16 29 H 0.04 0.51 7.50 -51.93 -0.39 0.12 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 32 H 0.38 9.77 7.80 -40.82 -0.32 9.46 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 34 H 0.08 0.80 8.13 -51.93 -0.42 0.37 16 35 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 36 H 0.07 0.78 7.57 -51.93 -0.39 0.38 16 37 H 0.07 0.81 7.42 -51.93 -0.39 0.42 16 38 H 0.42 0.54 9.06 45.56 0.41 0.95 16 39 H 0.42 2.41 9.06 45.56 0.41 2.82 16 40 H 0.09 1.68 8.04 -51.92 -0.42 1.26 16 41 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -34.19 350.81 -5.94 -40.13 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.57 Total: 7.99 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -2.05 Total: 9.34 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.36 Total: -62.56 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.95 Total: -17.34 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.19 -5.94 -40.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672214796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.533 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds