Wall clock time and date at job start Fri Apr 10 2020 18:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47039 * 2 1 4 4 N 1.46494 * 109.46826 * 120.00434 * 2 1 3 5 5 C 1.36939 * 119.99773 * 274.99240 * 4 2 1 6 6 H 1.08002 * 120.00311 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99719 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00170 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99873 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47226 * 59.99498 * 9 7 5 11 11 H 1.48499 * 109.47285 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47123 * 299.99567 * 9 7 5 13 13 C 1.53003 * 109.46559 * 240.00083 * 2 1 3 14 14 H 1.08998 * 110.88634 * 302.42735 * 13 2 1 15 15 C 1.55162 * 111.00484 * 66.35400 * 13 2 1 16 16 C 1.54329 * 103.01863 * 153.37624 * 15 13 2 17 17 N 1.47018 * 107.26956 * 338.14129 * 16 15 13 18 18 C 1.34781 * 125.64787 * 178.85257 * 17 16 15 19 19 O 1.21578 * 119.99570 * 179.69389 * 18 17 16 20 20 C 1.47612 * 119.99852 * 359.68648 * 18 17 16 21 21 N 1.33053 * 120.53581 * 0.02569 * 20 18 17 22 22 N 1.28707 * 120.37370 * 179.97438 * 21 20 18 23 23 C 1.32949 * 121.55054 * 0.02562 * 22 21 20 24 24 O 1.35296 * 119.46832 * 180.02562 * 23 22 21 25 25 N 1.32461 * 121.06089 * 359.97438 * 23 22 21 26 26 C 1.32864 * 119.51612 * 0.02562 * 25 23 22 27 27 O 1.35284 * 120.71858 * 180.02562 * 26 25 23 28 28 C 1.47423 * 108.70041 * 358.58181 * 17 16 15 29 29 H 1.09002 * 109.47023 * 59.99621 * 1 2 3 30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46986 * 300.00265 * 1 2 3 32 32 H 0.97001 * 120.00351 * 95.00098 * 4 2 1 33 33 H 0.97000 * 120.00034 * 180.02562 * 8 7 5 34 34 H 1.09003 * 110.71771 * 271.93584 * 15 13 2 35 35 H 1.09004 * 110.71733 * 35.03233 * 15 13 2 36 36 H 1.09007 * 109.99078 * 218.66168 * 16 15 13 37 37 H 1.09007 * 109.77766 * 97.49744 * 16 15 13 38 38 H 0.96707 * 113.99445 * 269.99720 * 24 23 22 39 39 H 0.96703 * 113.99919 * 89.99661 * 27 26 25 40 40 H 1.09010 * 110.36499 * 143.19627 * 28 17 16 41 41 H 1.08995 * 110.36962 * 265.40661 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6123 -0.6619 3.5089 8 7 2.9252 -1.9390 3.4498 9 14 2.7902 0.2698 5.1183 10 1 1.4675 0.8058 5.5288 11 1 3.2991 -0.6487 6.1683 12 1 3.7448 1.3927 4.9372 13 6 2.0399 -0.7213 -1.2493 14 1 1.6545 -1.7399 -1.2944 15 6 1.6775 0.0689 -2.5345 16 6 2.7786 -0.3588 -3.5277 17 7 3.9163 -0.8465 -2.7345 18 6 5.0706 -1.3322 -3.2328 19 8 5.9493 -1.7038 -2.4792 20 6 5.2677 -1.4131 -4.6935 21 7 4.3133 -1.0091 -5.5278 22 7 4.4887 -1.0806 -6.8009 23 6 5.6158 -1.5553 -7.3223 24 8 5.7554 -1.6110 -8.6668 25 7 6.6045 -1.9737 -6.5465 26 6 6.4686 -1.9190 -5.2259 27 8 7.4630 -2.3394 -4.4108 28 6 3.5880 -0.7103 -1.3038 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6319 1.1525 33 1 3.2484 -2.3963 4.2418 34 1 0.6920 -0.2201 -2.8998 35 1 1.7200 1.1427 -2.3519 36 1 3.0868 0.4942 -4.1324 37 1 2.4059 -1.1563 -4.1706 38 1 5.4523 -2.4411 -9.0597 39 1 8.0951 -1.6474 -4.1723 40 1 3.9934 -1.5505 -0.7398 41 1 3.9764 0.2303 -0.9133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672214796.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:30 Heat of formation + Delta-G solvation = -36.220900 kcal Electronic energy + Delta-G solvation = -27303.867299 eV Core-core repulsion = 23220.528706 eV Total energy + Delta-G solvation = -4083.338593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.38766 -41.16034 -39.72783 -38.87328 -38.83350 -36.78462 -35.62789 -34.34189 -33.28380 -31.87249 -29.99847 -29.64031 -27.53376 -26.37635 -25.81751 -24.61089 -22.84738 -21.54730 -21.20909 -21.05319 -20.68212 -19.69395 -19.20980 -18.39290 -17.72556 -17.25526 -16.95812 -16.89310 -16.48098 -15.81291 -15.43410 -15.23165 -15.03591 -14.60716 -14.33966 -14.25801 -14.08661 -13.81727 -13.71544 -13.49965 -13.35160 -13.08088 -12.89428 -12.77105 -12.75157 -12.55925 -12.30183 -12.22371 -11.99668 -11.67142 -11.49471 -11.37676 -11.33778 -11.26299 -10.88674 -10.71995 -9.77084 -8.94404 -7.88498 -5.15561 -1.29938 -1.02084 1.18867 1.27733 1.49078 1.51334 1.57080 1.62616 1.72348 2.03550 2.36347 2.59969 3.06976 3.22801 3.44949 3.53443 3.68125 3.74140 3.90624 4.14897 4.23719 4.37958 4.48581 4.60188 4.69156 4.77981 4.91484 4.97395 5.03471 5.09237 5.15710 5.16665 5.25984 5.36886 5.46006 5.58136 5.69955 6.13869 6.18914 6.27549 6.33777 6.70464 6.85057 7.39898 8.18195 8.38975 9.34907 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021834 B = 0.002830 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.119301 B = 9892.649268 C =10938.516858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.180 3.820 3 H 0.050 0.950 4 N -0.737 5.737 5 C -0.229 4.229 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.971 5.971 9 Si 0.966 3.034 10 H -0.278 1.278 11 H -0.301 1.301 12 H -0.280 1.280 13 C -0.094 4.094 14 H 0.078 0.922 15 C -0.114 4.114 16 C 0.107 3.893 17 N -0.594 5.594 18 C 0.584 3.416 19 O -0.545 6.545 20 C -0.056 4.056 21 N -0.102 5.102 22 N -0.292 5.292 23 C 0.492 3.508 24 O -0.445 6.445 25 N -0.516 5.516 26 C 0.430 3.570 27 O -0.452 6.452 28 C 0.126 3.874 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.370 0.630 33 H 0.248 0.752 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.446 0.554 39 H 0.440 0.560 40 H 0.050 0.950 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.726 2.932 -25.931 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.071 3.929 3 H 0.068 0.932 4 N -0.377 5.377 5 C -0.362 4.362 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.622 5.622 9 Si 0.796 3.204 10 H -0.204 1.204 11 H -0.228 1.228 12 H -0.206 1.206 13 C -0.114 4.114 14 H 0.096 0.904 15 C -0.152 4.152 16 C -0.014 4.014 17 N -0.325 5.325 18 C 0.368 3.632 19 O -0.422 6.422 20 C -0.208 4.208 21 N 0.038 4.962 22 N -0.155 5.155 23 C 0.187 3.813 24 O -0.252 6.252 25 N -0.260 5.260 26 C 0.232 3.768 27 O -0.262 6.262 28 C 0.004 3.996 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.202 0.798 33 H 0.056 0.944 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.314 0.686 39 H 0.308 0.692 40 H 0.068 0.932 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.614 3.143 -26.199 26.436 hybrid contribution 1.303 -0.682 1.748 2.285 sum 2.917 2.461 -24.450 24.746 Atomic orbital electron populations 1.22282 0.97089 1.00896 1.01093 1.20416 0.93112 0.94869 0.84455 0.93217 1.42653 1.78448 1.10274 1.06367 1.19553 1.34207 0.94111 0.88281 0.90544 1.25481 1.03466 0.96791 1.01299 1.69809 1.52975 1.10217 1.29230 0.85317 0.77890 0.77302 0.79913 1.20429 1.22750 1.20607 1.22514 0.92293 1.00684 0.95874 0.90362 1.22779 0.99240 1.01149 0.92013 1.22426 0.84843 1.00395 0.93739 1.48494 1.15369 1.59697 1.08973 1.16906 0.82159 0.78939 0.85168 1.90885 1.42731 1.49862 1.58750 1.23659 0.96168 1.03814 0.97191 1.74177 1.21632 1.04103 0.96243 1.73893 1.19323 1.17333 1.04972 1.21984 0.84098 0.87267 0.87913 1.84671 1.85516 1.45252 1.09761 1.68318 1.34006 1.18782 1.04895 1.19867 0.88491 0.82706 0.85747 1.84636 1.39404 1.39993 1.62208 1.22130 0.96635 1.01208 0.79664 0.90083 0.94075 0.94805 0.79813 0.94356 0.87021 0.89056 0.89258 0.89609 0.68650 0.69184 0.93178 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 9.34 71.98 0.67 -4.08 16 2 C 0.18 6.31 2.41 44.99 0.11 6.41 16 3 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 4 N -0.74 -35.43 4.82 -322.94 -1.56 -36.98 16 5 C -0.23 -12.38 9.93 84.03 0.83 -11.54 16 6 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 7 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 8 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 9 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 C -0.09 -2.67 2.63 -9.40 -0.02 -2.70 16 14 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.11 -2.15 5.59 31.79 0.18 -1.97 16 16 C 0.11 2.14 5.41 86.73 0.47 2.61 16 17 N -0.59 -16.39 3.33 -815.43 -2.71 -19.10 16 18 C 0.58 17.09 7.83 86.72 0.68 17.77 16 19 O -0.55 -19.57 15.52 16.47 0.26 -19.31 16 20 C -0.06 -1.31 6.81 42.05 0.29 -1.02 16 21 N -0.10 -2.13 8.24 -48.10 -0.40 -2.53 16 22 N -0.29 -5.58 11.60 -174.22 -2.02 -7.60 16 23 C 0.49 8.35 8.81 180.33 1.59 9.93 16 24 O -0.45 -4.80 13.63 -85.82 -1.17 -5.97 16 25 N -0.52 -10.06 10.57 -424.98 -4.49 -14.56 16 26 C 0.43 9.16 7.85 85.15 0.67 9.83 16 27 O -0.45 -9.26 11.76 -65.26 -0.77 -10.03 16 28 C 0.13 4.15 6.08 86.86 0.53 4.68 16 29 H 0.08 1.82 7.50 -2.39 -0.02 1.80 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.37 19.60 7.80 -92.71 -0.72 18.88 16 33 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.11 1.57 8.13 -2.39 -0.02 1.55 16 35 H 0.09 1.56 8.01 -2.38 -0.02 1.54 16 36 H 0.09 1.58 7.57 -2.38 -0.02 1.56 16 37 H 0.09 1.58 7.42 -2.38 -0.02 1.56 16 38 H 0.45 -0.30 9.06 -74.05 -0.67 -0.97 16 39 H 0.44 4.97 9.06 -74.06 -0.67 4.30 16 40 H 0.05 2.03 8.04 -2.38 -0.02 2.01 16 41 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 Total: -1.00 -75.64 350.81 -5.04 -80.68 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.95 Total: 20.78 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 6.45 Total: 25.90 kcal Atomic # 7 Polarization: -129.49 SS G_CDS: -10.90 Total: -140.39 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.68 Total: -35.31 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -75.64 -5.04 -80.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672214796.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.458 kcal (2) G-P(sol) polarization free energy of solvation -75.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds