Wall clock time and date at job start Fri Apr 10 2020 18:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47404 * 2 1 4 4 N 1.46504 * 109.46800 * 239.99858 * 2 1 3 5 5 C 1.36940 * 120.00017 * 85.00803 * 4 2 1 6 6 H 1.07999 * 119.99495 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00211 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99740 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00173 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47181 * 59.99933 * 9 7 5 11 11 H 1.48501 * 109.47119 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47164 * 299.99389 * 9 7 5 13 13 C 1.52999 * 109.47033 * 120.00360 * 2 1 3 14 14 H 1.08998 * 110.88954 * 56.81752 * 13 2 1 15 15 C 1.55161 * 111.00649 * 180.70374 * 13 2 1 16 16 C 1.54314 * 102.94465 * 153.57232 * 15 13 2 17 17 N 1.47020 * 107.27241 * 337.80708 * 16 15 13 18 18 C 1.34775 * 125.64742 * 178.90470 * 17 16 15 19 19 O 1.21583 * 119.99776 * 180.02562 * 18 17 16 20 20 C 1.47623 * 120.00353 * 0.02771 * 18 17 16 21 21 N 1.33056 * 120.52643 * 0.02562 * 20 18 17 22 22 N 1.28707 * 120.36761 * 179.97438 * 21 20 18 23 23 C 1.32948 * 121.55425 * 0.02562 * 22 21 20 24 24 O 1.35288 * 119.47040 * 180.02562 * 23 22 21 25 25 N 1.32468 * 121.05952 * 359.97438 * 23 22 21 26 26 C 1.32859 * 119.51201 * 0.02562 * 25 23 22 27 27 O 1.35292 * 120.71660 * 180.02562 * 26 25 23 28 28 C 1.47424 * 108.70472 * 359.16626 * 17 16 15 29 29 H 1.08999 * 109.47481 * 185.27236 * 1 2 3 30 30 H 1.09005 * 109.47300 * 305.27247 * 1 2 3 31 31 H 1.09005 * 109.47453 * 65.26666 * 1 2 3 32 32 H 0.96998 * 120.00019 * 264.99691 * 4 2 1 33 33 H 0.97007 * 119.99871 * 179.97438 * 8 7 5 34 34 H 1.09001 * 110.71868 * 35.20193 * 15 13 2 35 35 H 1.09002 * 110.71859 * 271.93768 * 15 13 2 36 36 H 1.09002 * 109.88505 * 218.38880 * 16 15 13 37 37 H 1.09000 * 110.00898 * 97.29694 * 16 15 13 38 38 H 0.96704 * 114.00235 * 269.97950 * 24 23 22 39 39 H 0.96697 * 114.00303 * 89.99681 * 27 26 25 40 40 H 1.08993 * 110.36580 * 142.73608 * 28 17 16 41 41 H 1.08998 * 110.37081 * 265.06660 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8920 1.0403 -2.4243 7 6 2.6112 -0.6620 -3.5093 8 7 2.9241 -1.9391 -3.4502 9 14 2.7891 0.2697 -5.1185 10 1 3.7445 1.3920 -4.9377 11 1 3.2981 -0.6487 -6.1686 12 1 1.4666 0.8065 -5.5285 13 6 2.0399 -0.7213 1.2492 14 1 1.6440 -1.7355 1.3012 15 6 3.5909 -0.7267 1.2941 16 6 3.8926 -0.8280 2.8041 17 7 2.7039 -0.3426 3.5203 18 6 2.5606 -0.2903 4.8594 19 8 1.5285 0.1314 5.3443 20 6 3.6567 -0.7451 5.7374 21 7 4.7909 -1.2080 5.2181 22 7 5.7448 -1.6033 5.9865 23 6 5.6329 -1.5645 7.3107 24 8 6.6623 -1.9901 8.0784 25 7 4.5300 -1.1147 7.8905 26 6 3.5187 -0.6960 7.1374 27 8 2.3813 -0.2314 7.7038 28 6 1.6924 0.0718 2.5311 29 1 -0.3634 -1.0233 0.0944 30 1 -0.3634 0.5935 0.8390 31 1 -0.3634 0.4300 -0.9334 32 1 2.2489 -1.6318 -1.1526 33 1 3.2467 -2.3966 -4.2424 34 1 3.9918 0.1992 0.8819 35 1 3.9890 -1.5910 0.7625 36 1 4.7540 -0.2080 3.0525 37 1 4.0915 -1.8647 3.0760 38 1 6.6266 -2.9313 8.2975 39 1 2.3862 0.7207 7.8723 40 1 0.6928 -0.1882 2.8792 41 1 1.7628 1.1430 2.3424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672214797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:33 Heat of formation + Delta-G solvation = -4.098109 kcal Electronic energy + Delta-G solvation = -27183.656947 eV Core-core repulsion = 23101.711303 eV Total energy + Delta-G solvation = -4081.945644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.59219 -40.15650 -38.92812 -38.18193 -37.73756 -35.29947 -34.83601 -32.82808 -32.09399 -30.47082 -29.26507 -27.59704 -26.70487 -25.55352 -24.42646 -23.16357 -21.48281 -20.63498 -20.53565 -19.87347 -19.66960 -19.00559 -17.61793 -17.06403 -16.89008 -16.35001 -16.10432 -15.83526 -15.01645 -14.45248 -14.17851 -13.84154 -13.63590 -13.52056 -13.34121 -13.22659 -13.00048 -12.74115 -12.50192 -12.42479 -12.17539 -12.08264 -11.98487 -11.65333 -11.21868 -10.88465 -10.71159 -10.61271 -10.52901 -10.39927 -10.31753 -10.24295 -9.91694 -9.87939 -9.64747 -8.92195 -8.74316 -6.97743 -5.77746 -3.06299 -0.51784 -0.21834 1.94230 2.11208 2.46569 2.57336 2.91005 3.23361 3.43236 3.48256 3.48732 3.86593 4.00415 4.34266 4.55205 4.76020 4.82913 4.92789 5.12558 5.39089 5.52264 5.57357 5.70030 5.86088 5.88748 5.92658 5.95285 6.06207 6.11006 6.22435 6.40431 6.43126 6.56336 6.59831 6.62855 6.67155 6.84978 7.08393 7.25249 7.57546 7.68765 7.77954 8.40793 9.52268 10.09101 10.44029 11.44747 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.002634 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.468316 B =10626.258080 C =11595.623046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.721 5.721 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.104 4.104 14 H 0.082 0.918 15 C -0.117 4.117 16 C 0.103 3.897 17 N -0.590 5.590 18 C 0.588 3.412 19 O -0.517 6.517 20 C -0.047 4.047 21 N -0.105 5.105 22 N -0.283 5.283 23 C 0.479 3.521 24 O -0.447 6.447 25 N -0.510 5.510 26 C 0.422 3.578 27 O -0.441 6.441 28 C 0.114 3.886 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.423 0.577 39 H 0.423 0.577 40 H 0.082 0.918 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 1.280 22.967 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.124 4.124 14 H 0.100 0.900 15 C -0.155 4.155 16 C -0.020 4.020 17 N -0.322 5.322 18 C 0.372 3.628 19 O -0.392 6.392 20 C -0.200 4.200 21 N 0.036 4.964 22 N -0.145 5.145 23 C 0.175 3.825 24 O -0.250 6.250 25 N -0.253 5.253 26 C 0.223 3.777 27 O -0.249 6.249 28 C -0.008 4.008 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.285 0.715 39 H 0.287 0.713 40 H 0.100 0.900 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.824 1.262 22.863 23.215 hybrid contribution -0.409 0.281 -0.246 0.554 sum 3.415 1.543 22.617 22.925 Atomic orbital electron populations 1.22503 0.99234 1.00637 1.00478 1.20121 0.91780 0.95168 0.85395 0.93217 1.42350 1.78169 1.10674 1.05075 1.19160 1.36559 0.93816 0.87288 0.91289 1.24710 1.02211 0.95943 0.97969 1.69646 1.50892 1.08611 1.28959 0.86302 0.77746 0.78614 0.83711 1.21311 1.21770 1.21359 1.22675 0.95740 1.00048 0.93915 0.89987 1.22637 0.95823 1.04490 0.92538 1.22392 0.86824 1.00128 0.92626 1.48431 1.18798 1.60925 1.04022 1.16590 0.85147 0.80129 0.80955 1.90870 1.27298 1.47051 1.74003 1.24052 0.97336 1.04339 0.94272 1.74315 0.95374 0.99616 1.27081 1.73936 1.21892 1.15611 1.03039 1.21921 0.84404 0.89725 0.86485 1.84695 1.39616 1.32525 1.68139 1.68195 1.00249 1.14416 1.42487 1.19875 0.84273 0.87291 0.86214 1.84679 1.28322 1.30379 1.81512 1.22413 0.91751 0.99513 0.87122 0.93564 0.94399 0.92524 0.78250 0.93492 0.90057 0.89208 0.90662 0.90588 0.71539 0.71350 0.90004 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.27 37.15 0.34 -2.50 16 2 C 0.19 3.33 2.41 -67.93 -0.16 3.17 16 3 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 4 N -0.72 -16.70 4.80 -53.43 -0.26 -16.96 16 5 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 6 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 9 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 C -0.10 -1.53 2.61 -88.58 -0.23 -1.76 16 14 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.12 -1.65 6.11 -24.90 -0.15 -1.80 16 16 C 0.10 1.26 5.41 -3.07 -0.02 1.24 16 17 N -0.59 -7.60 3.33 -171.86 -0.57 -8.17 16 18 C 0.59 7.66 7.83 -12.43 -0.10 7.57 16 19 O -0.52 -7.60 15.52 -16.08 -0.25 -7.85 16 20 C -0.05 -0.54 6.81 -82.56 -0.56 -1.10 16 21 N -0.11 -1.22 8.23 33.45 0.28 -0.94 16 22 N -0.28 -3.11 11.60 29.21 0.34 -2.78 16 23 C 0.48 4.60 8.81 -90.57 -0.80 3.80 16 24 O -0.45 -3.08 13.63 -17.56 -0.24 -3.32 16 25 N -0.51 -5.17 10.57 -14.33 -0.15 -5.33 16 26 C 0.42 4.33 7.85 -16.16 -0.13 4.21 16 27 O -0.44 -3.99 11.76 -38.94 -0.46 -4.45 16 28 C 0.11 1.50 5.67 -2.64 -0.01 1.48 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.53 7.70 -51.93 -0.40 0.13 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.38 9.50 7.80 -40.82 -0.32 9.18 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 0.88 7.56 -51.93 -0.39 0.49 16 37 H 0.08 0.91 7.42 -51.93 -0.39 0.53 16 38 H 0.42 0.56 9.06 45.56 0.41 0.97 16 39 H 0.42 1.80 9.06 45.56 0.41 2.22 16 40 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 41 H 0.08 0.97 7.99 -51.93 -0.41 0.55 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -33.24 350.98 -5.96 -39.20 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -3.57 Total: 7.51 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -2.06 Total: 7.47 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.36 Total: -60.65 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.95 Total: -15.62 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.24 -5.96 -39.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672214797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.102 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds