Wall clock time and date at job start Fri Apr 10 2020 18:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47404 * 2 1 4 4 N 1.46504 * 109.46800 * 239.99858 * 2 1 3 5 5 C 1.36940 * 120.00017 * 85.00803 * 4 2 1 6 6 H 1.07999 * 119.99495 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00211 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99740 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00173 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47181 * 59.99933 * 9 7 5 11 11 H 1.48501 * 109.47119 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47164 * 299.99389 * 9 7 5 13 13 C 1.52999 * 109.47033 * 120.00360 * 2 1 3 14 14 H 1.08998 * 110.88954 * 56.81752 * 13 2 1 15 15 C 1.55161 * 111.00649 * 180.70374 * 13 2 1 16 16 C 1.54314 * 102.94465 * 153.57232 * 15 13 2 17 17 N 1.47020 * 107.27241 * 337.80708 * 16 15 13 18 18 C 1.34775 * 125.64742 * 178.90470 * 17 16 15 19 19 O 1.21583 * 119.99776 * 180.02562 * 18 17 16 20 20 C 1.47623 * 120.00353 * 0.02771 * 18 17 16 21 21 N 1.33056 * 120.52643 * 0.02562 * 20 18 17 22 22 N 1.28707 * 120.36761 * 179.97438 * 21 20 18 23 23 C 1.32948 * 121.55425 * 0.02562 * 22 21 20 24 24 O 1.35288 * 119.47040 * 180.02562 * 23 22 21 25 25 N 1.32468 * 121.05952 * 359.97438 * 23 22 21 26 26 C 1.32859 * 119.51201 * 0.02562 * 25 23 22 27 27 O 1.35292 * 120.71660 * 180.02562 * 26 25 23 28 28 C 1.47424 * 108.70472 * 359.16626 * 17 16 15 29 29 H 1.08999 * 109.47481 * 185.27236 * 1 2 3 30 30 H 1.09005 * 109.47300 * 305.27247 * 1 2 3 31 31 H 1.09005 * 109.47453 * 65.26666 * 1 2 3 32 32 H 0.96998 * 120.00019 * 264.99691 * 4 2 1 33 33 H 0.97007 * 119.99871 * 179.97438 * 8 7 5 34 34 H 1.09001 * 110.71868 * 35.20193 * 15 13 2 35 35 H 1.09002 * 110.71859 * 271.93768 * 15 13 2 36 36 H 1.09002 * 109.88505 * 218.38880 * 16 15 13 37 37 H 1.09000 * 110.00898 * 97.29694 * 16 15 13 38 38 H 0.96704 * 114.00235 * 269.97950 * 24 23 22 39 39 H 0.96697 * 114.00303 * 89.99681 * 27 26 25 40 40 H 1.08993 * 110.36580 * 142.73608 * 28 17 16 41 41 H 1.08998 * 110.37081 * 265.06660 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8920 1.0403 -2.4243 7 6 2.6112 -0.6620 -3.5093 8 7 2.9241 -1.9391 -3.4502 9 14 2.7891 0.2697 -5.1185 10 1 3.7445 1.3920 -4.9377 11 1 3.2981 -0.6487 -6.1686 12 1 1.4666 0.8065 -5.5285 13 6 2.0399 -0.7213 1.2492 14 1 1.6440 -1.7355 1.3012 15 6 3.5909 -0.7267 1.2941 16 6 3.8926 -0.8280 2.8041 17 7 2.7039 -0.3426 3.5203 18 6 2.5606 -0.2903 4.8594 19 8 1.5285 0.1314 5.3443 20 6 3.6567 -0.7451 5.7374 21 7 4.7909 -1.2080 5.2181 22 7 5.7448 -1.6033 5.9865 23 6 5.6329 -1.5645 7.3107 24 8 6.6623 -1.9901 8.0784 25 7 4.5300 -1.1147 7.8905 26 6 3.5187 -0.6960 7.1374 27 8 2.3813 -0.2314 7.7038 28 6 1.6924 0.0718 2.5311 29 1 -0.3634 -1.0233 0.0944 30 1 -0.3634 0.5935 0.8390 31 1 -0.3634 0.4300 -0.9334 32 1 2.2489 -1.6318 -1.1526 33 1 3.2467 -2.3966 -4.2424 34 1 3.9918 0.1992 0.8819 35 1 3.9890 -1.5910 0.7625 36 1 4.7540 -0.2080 3.0525 37 1 4.0915 -1.8647 3.0760 38 1 6.6266 -2.9313 8.2975 39 1 2.3862 0.7207 7.8723 40 1 0.6928 -0.1882 2.8792 41 1 1.7628 1.1430 2.3424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672214797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:33 Heat of formation + Delta-G solvation = -35.160888 kcal Electronic energy + Delta-G solvation = -27185.003930 eV Core-core repulsion = 23101.711303 eV Total energy + Delta-G solvation = -4083.292628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.38038 -41.17406 -39.71964 -38.86939 -38.82182 -36.77879 -35.61533 -34.30354 -33.27141 -31.73380 -30.77486 -28.90533 -27.57442 -26.45145 -25.95885 -24.52115 -22.78654 -21.59469 -21.20366 -21.05956 -20.69647 -19.67959 -19.14181 -18.44513 -17.74902 -17.31382 -16.95260 -16.89717 -16.44575 -15.82254 -15.41241 -15.10455 -14.84989 -14.66956 -14.50291 -14.23732 -13.91412 -13.84481 -13.78189 -13.52913 -13.41556 -13.14460 -12.87897 -12.78044 -12.74174 -12.69941 -12.25074 -12.19772 -11.95446 -11.60261 -11.50759 -11.38127 -11.33874 -11.27269 -10.86540 -10.70034 -9.77913 -8.92722 -7.86902 -5.13360 -1.28544 -1.00186 1.19463 1.27977 1.51773 1.53107 1.58871 1.62845 1.73676 2.04770 2.37871 2.61581 3.05413 3.24802 3.46405 3.52264 3.68281 3.71407 3.89934 4.17368 4.27515 4.36051 4.41918 4.57648 4.66574 4.72738 4.84735 4.95565 5.02823 5.07983 5.14341 5.17542 5.25892 5.36782 5.44167 5.59494 5.67177 6.17008 6.18512 6.23425 6.35667 6.69416 6.86467 7.42564 8.19627 8.42381 9.36286 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.002634 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.468316 B =10626.258080 C =11595.623046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.050 0.950 4 N -0.731 5.731 5 C -0.230 4.230 6 H 0.074 0.926 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.964 3.036 10 H -0.279 1.279 11 H -0.300 1.300 12 H -0.282 1.282 13 C -0.095 4.095 14 H 0.078 0.922 15 C -0.113 4.113 16 C 0.116 3.884 17 N -0.592 5.592 18 C 0.592 3.408 19 O -0.535 6.535 20 C -0.058 4.058 21 N -0.110 5.110 22 N -0.298 5.298 23 C 0.491 3.509 24 O -0.446 6.446 25 N -0.516 5.516 26 C 0.433 3.567 27 O -0.448 6.448 28 C 0.121 3.879 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.373 0.627 33 H 0.248 0.752 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.446 0.554 39 H 0.441 0.559 40 H 0.085 0.915 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.528 2.112 24.692 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 H 0.068 0.932 4 N -0.371 5.371 5 C -0.362 4.362 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.794 3.206 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.209 1.209 13 C -0.115 4.115 14 H 0.097 0.903 15 C -0.151 4.151 16 C -0.007 4.007 17 N -0.324 5.324 18 C 0.376 3.624 19 O -0.412 6.412 20 C -0.211 4.211 21 N 0.031 4.969 22 N -0.161 5.161 23 C 0.187 3.813 24 O -0.253 6.253 25 N -0.260 5.260 26 C 0.235 3.765 27 O -0.259 6.259 28 C -0.001 4.001 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.205 0.795 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.313 0.687 39 H 0.309 0.691 40 H 0.104 0.896 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.904 2.124 24.645 25.043 hybrid contribution -0.430 0.038 -0.624 0.759 sum 3.474 2.162 24.021 24.367 Atomic orbital electron populations 1.22370 0.97975 1.00931 1.00728 1.20308 0.92464 0.94972 0.84865 0.93216 1.42518 1.78337 1.10304 1.05943 1.19520 1.34299 0.94058 0.88283 0.90808 1.25414 1.03438 0.96774 1.01025 1.69794 1.52929 1.10030 1.29203 0.85347 0.77757 0.77387 0.80087 1.20529 1.22645 1.20855 1.22467 0.96035 0.99699 0.93324 0.90331 1.22535 0.95315 1.03391 0.93895 1.22262 0.86875 1.00608 0.90925 1.48414 1.18738 1.61071 1.04165 1.16706 0.85241 0.79576 0.80830 1.90855 1.28141 1.47926 1.74276 1.23795 0.97104 1.05723 0.94519 1.74221 0.95480 0.99482 1.27723 1.73916 1.21852 1.16578 1.03774 1.21985 0.84463 0.88539 0.86327 1.84664 1.38515 1.34685 1.67469 1.68323 1.00441 1.14990 1.42222 1.19832 0.84371 0.86488 0.85850 1.84636 1.27839 1.32141 1.81251 1.22292 0.92021 0.99580 0.86186 0.93844 0.91136 0.94624 0.79482 0.94287 0.90898 0.90611 0.89784 0.90175 0.68685 0.69079 0.89639 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.21 9.27 71.98 0.67 -4.55 16 2 C 0.18 6.42 2.41 44.99 0.11 6.53 16 3 H 0.05 1.77 8.03 -2.39 -0.02 1.75 16 4 N -0.73 -34.02 4.80 -322.95 -1.55 -35.57 16 5 C -0.23 -12.08 9.93 84.03 0.83 -11.25 16 6 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 7 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 8 N -0.97 -57.55 13.06 21.65 0.28 -57.27 16 9 Si 0.96 45.16 29.55 68.60 2.03 47.19 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 C -0.10 -2.73 2.61 -9.47 -0.02 -2.75 16 14 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.11 -3.16 6.11 31.78 0.19 -2.96 16 16 C 0.12 2.69 5.41 86.73 0.47 3.16 16 17 N -0.59 -14.35 3.33 -815.90 -2.72 -17.06 16 18 C 0.59 14.50 7.83 86.72 0.68 15.18 16 19 O -0.54 -14.85 15.52 16.46 0.26 -14.60 16 20 C -0.06 -1.25 6.81 42.05 0.29 -0.96 16 21 N -0.11 -2.40 8.23 -48.09 -0.40 -2.80 16 22 N -0.30 -6.11 11.60 -174.23 -2.02 -8.13 16 23 C 0.49 8.47 8.81 180.33 1.59 10.06 16 24 O -0.45 -5.12 13.63 -85.74 -1.17 -6.29 16 25 N -0.52 -9.46 10.57 -424.98 -4.49 -13.96 16 26 C 0.43 8.14 7.85 85.15 0.67 8.81 16 27 O -0.45 -7.28 11.76 -65.35 -0.77 -8.05 16 28 C 0.12 2.97 5.67 86.78 0.49 3.46 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.83 7.70 -2.38 -0.02 1.81 16 31 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.37 18.83 7.80 -92.71 -0.72 18.11 16 33 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 34 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.08 1.85 7.56 -2.39 -0.02 1.83 16 37 H 0.08 1.84 7.42 -2.39 -0.02 1.82 16 38 H 0.45 0.04 9.06 -74.05 -0.67 -0.63 16 39 H 0.44 2.93 9.06 -74.06 -0.67 2.26 16 40 H 0.09 2.07 8.04 -2.39 -0.02 2.05 16 41 H 0.08 1.95 7.99 -2.39 -0.02 1.93 16 Total: -1.00 -70.21 350.98 -5.06 -75.27 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -0.95 Total: 20.18 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 6.43 Total: 21.07 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -10.89 Total: -134.78 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -1.68 Total: -28.94 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -70.21 -5.06 -75.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672214797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.113 kcal (2) G-P(sol) polarization free energy of solvation -70.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds