Wall clock time and date at job start Fri Apr 10 2020 18:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47542 * 51.14585 * 3 2 1 5 5 C 1.47957 * 110.99978 * 189.99977 * 4 3 2 6 6 C 1.53936 * 86.18106 * 222.41217 * 5 4 3 7 7 N 1.46904 * 113.73302 * 138.07467 * 6 5 4 8 8 C 1.46895 * 111.00495 * 301.20695 * 7 6 5 9 9 C 1.53228 * 109.34167 * 172.74386 * 8 7 6 10 10 N 1.47083 * 108.52212 * 53.83090 * 9 8 7 11 11 C 1.34776 * 120.88284 * 128.79018 * 10 9 8 12 12 O 1.21278 * 120.00426 * 180.02562 * 11 10 9 13 13 C 1.50702 * 119.99766 * 0.02718 * 11 10 9 14 14 S 1.81005 * 109.46871 * 179.97438 * 13 11 10 15 15 C 1.76205 * 99.99745 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00076 * 0.02562 * 15 14 13 17 17 C 1.38802 * 119.99692 * 180.02562 * 15 14 13 18 18 N 1.31626 * 120.00270 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99745 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47343 * 59.99863 * 19 17 15 21 21 H 1.48498 * 109.46707 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46748 * 299.99418 * 19 17 15 23 23 C 1.47072 * 118.23733 * 308.81485 * 10 9 8 24 24 C 1.46906 * 110.99831 * 176.90377 * 7 6 5 25 25 C 1.48187 * 111.07308 * 90.56520 * 4 3 2 26 26 H 4.40886 * 5.52207 * 180.02562 * 4 1 2 27 27 H 1.09006 * 109.47377 * 291.14297 * 3 2 1 28 28 H 1.09000 * 109.47267 * 171.14573 * 3 2 1 29 29 H 1.09000 * 113.76247 * 108.10194 * 5 4 3 30 30 H 1.09002 * 113.86419 * 336.74300 * 5 4 3 31 31 H 1.09001 * 113.73830 * 269.25916 * 6 5 4 32 32 H 1.08997 * 109.49089 * 292.70978 * 8 7 6 33 33 H 1.09007 * 109.49281 * 52.78116 * 8 7 6 34 34 H 1.08995 * 109.63228 * 294.12148 * 9 8 7 35 35 H 1.09002 * 109.63099 * 173.54032 * 9 8 7 36 36 H 1.09004 * 109.47000 * 299.99595 * 13 11 10 37 37 H 1.09000 * 109.47613 * 59.99780 * 13 11 10 38 38 H 0.97001 * 120.00433 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.62875 * 291.47435 * 23 10 9 40 40 H 1.09006 * 109.78964 * 170.98862 * 23 10 9 41 41 H 1.08997 * 109.49116 * 307.21603 * 24 7 6 42 42 H 1.08996 * 109.49290 * 67.29548 * 24 7 6 43 43 H 1.08996 * 113.75716 * 23.23731 * 25 4 3 44 44 H 1.09003 * 113.82406 * 251.81425 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1361 -0.8679 -1.0785 5 6 4.5954 -1.0832 -0.9641 6 6 4.6395 -0.8910 -2.4908 7 7 5.7686 -0.0718 -2.9513 8 6 5.7328 1.2643 -2.3420 9 6 7.0157 2.0209 -2.7021 10 7 7.1706 2.0084 -4.1646 11 6 7.3891 3.1499 -4.8470 12 8 7.5140 3.1212 -6.0530 13 6 7.4780 4.4622 -4.1113 14 16 7.7756 5.7986 -5.2953 15 6 7.8329 7.1742 -4.1958 16 1 7.7001 7.0233 -3.1347 17 6 8.0487 8.4519 -4.6934 18 7 8.2110 8.6358 -5.9867 19 14 8.1102 9.9103 -3.5277 20 1 9.2102 9.7158 -2.5492 21 1 8.3506 11.1538 -4.3030 22 1 6.8180 10.0205 -2.8044 23 6 7.0804 0.7171 -4.8629 24 6 5.7948 0.0118 -4.4177 25 6 3.3263 -0.1034 -2.3336 26 1 -1.0499 0.0000 -0.0004 27 1 3.0095 -0.3699 0.9585 28 1 3.0088 1.0162 -0.1582 29 1 4.8672 -2.0878 -0.6401 30 1 5.1141 -0.3022 -0.4081 31 1 4.5302 -1.8184 -3.0531 32 1 4.8692 1.8127 -2.7184 33 1 5.6590 1.1682 -1.2587 34 1 7.8720 1.5308 -2.2390 35 1 6.9448 3.0501 -2.3502 36 1 6.5428 4.6463 -3.5824 37 1 8.2987 4.4224 -3.3951 38 1 8.3622 9.5286 -6.3345 39 1 7.9430 0.1016 -4.6074 40 1 7.0538 0.8811 -5.9402 41 1 5.7662 -0.9927 -4.8398 42 1 4.9305 0.5776 -4.7653 43 1 3.4712 0.9658 -2.1788 44 1 2.5856 -0.3265 -3.1016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674039416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:54 Heat of formation + Delta-G solvation = 83.619827 kcal Electronic energy + Delta-G solvation = -24674.756641 eV Core-core repulsion = 21142.907946 eV Total energy + Delta-G solvation = -3531.848695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15294 -39.56666 -37.32412 -34.63904 -33.42859 -32.45093 -31.67722 -30.00751 -29.11252 -26.78842 -26.63078 -25.49552 -24.04350 -23.89140 -21.71529 -19.85809 -18.81592 -18.63032 -17.70741 -17.12673 -16.45632 -16.23044 -15.70335 -15.63031 -15.42001 -15.25379 -14.82525 -14.57614 -14.17116 -13.98128 -13.63781 -13.40736 -13.29761 -13.07060 -12.71070 -12.60171 -12.36589 -11.95870 -11.81917 -11.45287 -11.42943 -11.37819 -11.15930 -11.06020 -11.05866 -10.78630 -10.61268 -10.46046 -9.83711 -9.40543 -9.36008 -9.08177 -8.84501 -8.42068 -8.25683 -6.52806 -6.23550 -3.94612 2.36745 2.52737 2.86577 3.00988 3.21568 3.22428 3.27048 3.35237 3.56429 3.67847 3.98450 4.15325 4.18093 4.31584 4.52283 4.68473 4.71770 4.81091 4.86266 4.87854 4.98351 5.06243 5.10431 5.11687 5.18364 5.23068 5.32979 5.35910 5.46286 5.48993 5.55792 5.61562 5.69518 5.76325 5.82184 5.83621 5.91668 6.07084 6.42566 6.53667 6.63270 6.67895 7.30951 7.52766 7.57004 8.32589 8.52232 9.21452 10.83801 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.002714 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.970519 B =10312.800229 C =11749.526628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.180 4.180 3 C 0.128 3.872 4 N -0.474 5.474 5 C 0.009 3.991 6 C 0.064 3.936 7 N -0.525 5.525 8 C 0.033 3.967 9 C 0.115 3.885 10 N -0.622 5.622 11 C 0.535 3.465 12 O -0.516 6.516 13 C -0.150 4.150 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.118 3.882 24 C 0.044 3.956 25 C -0.037 4.037 26 H 0.217 0.783 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.082 -20.928 12.330 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.180 4.180 3 C 0.001 3.999 4 N -0.197 5.197 5 C -0.120 4.120 6 C -0.046 4.046 7 N -0.248 5.248 8 C -0.096 4.096 9 C -0.009 4.009 10 N -0.359 5.359 11 C 0.323 3.677 12 O -0.391 6.391 13 C -0.301 4.301 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.005 4.005 24 C -0.085 4.085 25 C -0.168 4.168 26 H 0.234 0.766 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.835 -21.601 10.544 25.609 hybrid contribution -0.717 2.098 2.143 3.083 sum -9.552 -19.503 12.686 25.151 Atomic orbital electron populations 1.24906 0.95924 1.00649 0.99992 1.22728 0.94070 1.00391 1.00852 1.19592 0.86084 0.97002 0.97221 1.68484 1.14687 1.34348 1.02157 1.24171 0.88222 1.03352 0.96206 1.23653 0.87240 0.97506 0.96179 1.61934 1.41735 1.13432 1.07737 1.22669 0.97955 0.89107 0.99837 1.21779 0.97145 1.01315 0.80682 1.48154 1.73734 1.06788 1.07245 1.20339 0.75166 0.84521 0.87651 1.90692 1.48212 1.86087 1.14062 1.23548 1.04623 0.97159 1.04762 1.85420 1.93854 0.95304 1.08797 1.22810 1.57441 0.93168 0.95007 0.91012 1.24991 0.94527 0.98414 0.95614 1.70003 1.45412 1.23071 1.11762 0.86229 0.78756 0.80427 0.80119 1.19908 1.20791 1.19954 1.21602 0.96771 0.83536 0.98612 1.22494 0.97961 1.01077 0.86945 1.24899 0.99340 0.98181 0.94368 0.76580 0.88485 0.91403 0.88446 0.90295 0.86655 0.93587 0.89678 0.90613 0.88872 0.89442 0.89230 0.92098 0.91035 0.88505 0.89420 0.93982 0.90110 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.69 19.25 29.55 0.57 -1.12 16 2 C -0.18 -1.72 13.65 -37.12 -0.51 -2.23 16 3 C 0.13 0.99 5.28 -6.61 -0.03 0.96 16 4 N -0.47 -3.84 6.12 -241.75 -1.48 -5.32 16 5 C 0.01 0.06 7.43 -2.76 -0.02 0.04 16 6 C 0.06 0.46 4.03 -69.40 -0.28 0.18 16 7 N -0.53 -4.39 4.76 -227.75 -1.08 -5.47 16 8 C 0.03 0.28 4.47 -3.71 -0.02 0.27 16 9 C 0.11 1.20 6.50 -3.61 -0.02 1.18 16 10 N -0.62 -8.63 3.01 -172.47 -0.52 -9.14 16 11 C 0.54 10.04 7.73 -10.98 -0.08 9.96 16 12 O -0.52 -11.70 15.32 5.56 0.09 -11.61 16 13 C -0.15 -3.01 4.52 36.01 0.16 -2.84 16 14 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 15 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 16 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 19 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.12 1.38 6.59 -3.61 -0.02 1.36 16 24 C 0.04 0.40 5.61 -3.70 -0.02 0.38 16 25 C -0.04 -0.30 7.25 -2.63 -0.02 -0.32 16 26 H 0.22 1.13 7.80 -54.10 -0.42 0.71 16 27 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.07 0.48 7.39 -51.93 -0.38 0.10 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.46 6.01 -51.93 -0.31 0.15 16 31 H 0.12 0.80 8.04 -51.93 -0.42 0.38 16 32 H 0.05 0.45 6.45 -51.93 -0.33 0.11 16 33 H 0.09 0.58 6.06 -51.93 -0.31 0.27 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.98 6.02 -51.93 -0.31 0.67 16 36 H 0.09 1.61 7.66 -51.91 -0.40 1.21 16 37 H 0.09 1.66 8.00 -51.92 -0.42 1.24 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.29 7.07 -51.93 -0.37 0.92 16 41 H 0.09 0.65 8.04 -51.93 -0.42 0.24 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.68 4.99 -51.93 -0.26 0.42 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -34.60 369.61 -10.46 -45.06 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.43 Total: -1.10 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.10 Total: -5.02 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -2.35 Total: -45.24 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.60 -10.46 -45.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674039416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.679 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds