Wall clock time and date at job start Fri Apr 10 2020 18:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47542 * 51.14585 * 3 2 1 5 5 C 1.47957 * 110.99978 * 189.99977 * 4 3 2 6 6 C 1.53936 * 86.18106 * 222.41217 * 5 4 3 7 7 N 1.46904 * 113.73302 * 138.07467 * 6 5 4 8 8 C 1.46895 * 111.00495 * 301.20695 * 7 6 5 9 9 C 1.53228 * 109.34167 * 172.74386 * 8 7 6 10 10 N 1.47083 * 108.52212 * 53.83090 * 9 8 7 11 11 C 1.34776 * 120.88284 * 128.79018 * 10 9 8 12 12 O 1.21278 * 120.00426 * 180.02562 * 11 10 9 13 13 C 1.50702 * 119.99766 * 0.02718 * 11 10 9 14 14 S 1.81005 * 109.46871 * 179.97438 * 13 11 10 15 15 C 1.76205 * 99.99745 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00076 * 0.02562 * 15 14 13 17 17 C 1.38802 * 119.99692 * 180.02562 * 15 14 13 18 18 N 1.31626 * 120.00270 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99745 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47343 * 59.99863 * 19 17 15 21 21 H 1.48498 * 109.46707 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46748 * 299.99418 * 19 17 15 23 23 C 1.47072 * 118.23733 * 308.81485 * 10 9 8 24 24 C 1.46906 * 110.99831 * 176.90377 * 7 6 5 25 25 C 1.48187 * 111.07308 * 90.56520 * 4 3 2 26 26 H 4.40886 * 5.52207 * 180.02562 * 4 1 2 27 27 H 1.09006 * 109.47377 * 291.14297 * 3 2 1 28 28 H 1.09000 * 109.47267 * 171.14573 * 3 2 1 29 29 H 1.09000 * 113.76247 * 108.10194 * 5 4 3 30 30 H 1.09002 * 113.86419 * 336.74300 * 5 4 3 31 31 H 1.09001 * 113.73830 * 269.25916 * 6 5 4 32 32 H 1.08997 * 109.49089 * 292.70978 * 8 7 6 33 33 H 1.09007 * 109.49281 * 52.78116 * 8 7 6 34 34 H 1.08995 * 109.63228 * 294.12148 * 9 8 7 35 35 H 1.09002 * 109.63099 * 173.54032 * 9 8 7 36 36 H 1.09004 * 109.47000 * 299.99595 * 13 11 10 37 37 H 1.09000 * 109.47613 * 59.99780 * 13 11 10 38 38 H 0.97001 * 120.00433 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.62875 * 291.47435 * 23 10 9 40 40 H 1.09006 * 109.78964 * 170.98862 * 23 10 9 41 41 H 1.08997 * 109.49116 * 307.21603 * 24 7 6 42 42 H 1.08996 * 109.49290 * 67.29548 * 24 7 6 43 43 H 1.08996 * 113.75716 * 23.23731 * 25 4 3 44 44 H 1.09003 * 113.82406 * 251.81425 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1361 -0.8679 -1.0785 5 6 4.5954 -1.0832 -0.9641 6 6 4.6395 -0.8910 -2.4908 7 7 5.7686 -0.0718 -2.9513 8 6 5.7328 1.2643 -2.3420 9 6 7.0157 2.0209 -2.7021 10 7 7.1706 2.0084 -4.1646 11 6 7.3891 3.1499 -4.8470 12 8 7.5140 3.1212 -6.0530 13 6 7.4780 4.4622 -4.1113 14 16 7.7756 5.7986 -5.2953 15 6 7.8329 7.1742 -4.1958 16 1 7.7001 7.0233 -3.1347 17 6 8.0487 8.4519 -4.6934 18 7 8.2110 8.6358 -5.9867 19 14 8.1102 9.9103 -3.5277 20 1 9.2102 9.7158 -2.5492 21 1 8.3506 11.1538 -4.3030 22 1 6.8180 10.0205 -2.8044 23 6 7.0804 0.7171 -4.8629 24 6 5.7948 0.0118 -4.4177 25 6 3.3263 -0.1034 -2.3336 26 1 -1.0499 0.0000 -0.0004 27 1 3.0095 -0.3699 0.9585 28 1 3.0088 1.0162 -0.1582 29 1 4.8672 -2.0878 -0.6401 30 1 5.1141 -0.3022 -0.4081 31 1 4.5302 -1.8184 -3.0531 32 1 4.8692 1.8127 -2.7184 33 1 5.6590 1.1682 -1.2587 34 1 7.8720 1.5308 -2.2390 35 1 6.9448 3.0501 -2.3502 36 1 6.5428 4.6463 -3.5824 37 1 8.2987 4.4224 -3.3951 38 1 8.3622 9.5286 -6.3345 39 1 7.9430 0.1016 -4.6074 40 1 7.0538 0.8811 -5.9402 41 1 5.7662 -0.9927 -4.8398 42 1 4.9305 0.5776 -4.7653 43 1 3.4712 0.9658 -2.1788 44 1 2.5856 -0.3265 -3.1016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674039416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:53 Heat of formation + Delta-G solvation = 57.594403 kcal Electronic energy + Delta-G solvation = -24675.885188 eV Core-core repulsion = 21142.907946 eV Total energy + Delta-G solvation = -3532.977242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84954 -40.75324 -38.35752 -35.55209 -34.59041 -34.19885 -32.61041 -30.98762 -30.20832 -27.85792 -27.49149 -27.19817 -24.89573 -24.57857 -22.68024 -20.77465 -20.01012 -19.38142 -19.18950 -18.26786 -17.23569 -17.13785 -16.88843 -16.80528 -16.68033 -16.31593 -15.96118 -15.83504 -15.35489 -14.86324 -14.69301 -14.48707 -14.40319 -14.19810 -13.81142 -13.51388 -13.29656 -13.18552 -13.15377 -12.87035 -12.66162 -12.61502 -12.27611 -12.17098 -12.02753 -11.85559 -11.73105 -11.26711 -11.13317 -11.07732 -10.89839 -10.27801 -9.96805 -9.81223 -9.28117 -8.68515 -8.34881 -6.13683 1.24315 1.43762 1.45111 1.54767 1.54854 1.72826 1.87656 2.06009 2.27015 2.66416 2.99219 3.08700 3.23589 3.42635 3.56735 3.61958 3.71621 3.90618 4.01909 4.07377 4.19337 4.20900 4.23508 4.29906 4.33707 4.37329 4.43333 4.49114 4.54957 4.66783 4.71839 4.77698 4.82135 4.88531 4.99061 5.03442 5.11832 5.27655 5.40854 5.47954 5.84702 5.93968 5.97949 6.18982 6.28292 6.67579 7.06085 7.11400 8.74129 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.002714 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.970519 B =10312.800229 C =11749.526628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.214 4.214 3 C 0.126 3.874 4 N -0.487 5.487 5 C 0.017 3.983 6 C 0.069 3.931 7 N -0.521 5.521 8 C 0.037 3.963 9 C 0.107 3.893 10 N -0.610 5.610 11 C 0.533 3.467 12 O -0.567 6.567 13 C -0.123 4.123 14 S -0.154 6.154 15 C -0.545 4.545 16 H 0.084 0.916 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.262 1.262 23 C 0.115 3.885 24 C 0.052 3.948 25 C -0.038 4.038 26 H 0.241 0.759 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.035 0.965 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.271 0.729 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.027 0.973 43 H 0.077 0.923 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.401 -22.014 15.446 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.214 4.214 3 C -0.001 4.001 4 N -0.210 5.210 5 C -0.111 4.111 6 C -0.041 4.041 7 N -0.244 5.244 8 C -0.091 4.091 9 C -0.015 4.015 10 N -0.344 5.344 11 C 0.321 3.679 12 O -0.445 6.445 13 C -0.274 4.274 14 S 0.074 5.926 15 C -0.693 4.693 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.185 1.185 21 H -0.205 1.205 22 H -0.186 1.186 23 C -0.007 4.007 24 C -0.076 4.076 25 C -0.168 4.168 26 H 0.258 0.742 27 H 0.129 0.871 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.053 0.947 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.129 0.871 42 H 0.045 0.955 43 H 0.095 0.905 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.167 -22.743 13.713 28.095 hybrid contribution -0.679 2.266 1.223 2.663 sum -9.845 -20.477 14.935 27.190 Atomic orbital electron populations 1.25697 0.96955 0.99941 0.99294 1.23413 0.95253 1.01153 1.01605 1.19701 0.85311 0.97350 0.97732 1.68469 1.15849 1.34469 1.02172 1.24196 0.87220 1.04317 0.95361 1.23670 0.86185 0.97196 0.97017 1.61960 1.42269 1.13294 1.06862 1.22652 0.96252 0.88869 1.01319 1.22091 0.99034 1.02192 0.78192 1.48172 1.71402 1.06035 1.08824 1.20140 0.75402 0.85386 0.87022 1.90675 1.51026 1.86809 1.16036 1.23356 1.06104 0.95058 1.02845 1.85620 1.94370 0.99138 1.13512 1.23154 1.57279 0.93488 0.95380 0.89811 1.26142 0.93749 1.01847 0.97437 1.70178 1.46640 1.23864 1.14139 0.85003 0.79489 0.75862 0.77647 1.18529 1.20496 1.18613 1.21762 0.98903 0.82628 0.97443 1.22400 0.95713 1.01665 0.87835 1.24853 0.99534 0.98070 0.94392 0.74207 0.87100 0.90868 0.87461 0.89190 0.86050 0.94723 0.87086 0.88666 0.88723 0.87607 0.87332 0.91994 0.89366 0.90653 0.87126 0.95482 0.90494 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.21 19.25 74.32 1.43 -1.78 16 2 C -0.21 -3.85 13.65 31.12 0.42 -3.42 16 3 C 0.13 1.72 5.28 84.50 0.45 2.17 16 4 N -0.49 -6.87 6.12 -918.75 -5.62 -12.50 16 5 C 0.02 0.17 7.43 86.41 0.64 0.81 16 6 C 0.07 0.81 4.03 46.48 0.19 1.00 16 7 N -0.52 -7.23 4.76 -874.46 -4.16 -11.39 16 8 C 0.04 0.54 4.47 86.38 0.39 0.92 16 9 C 0.11 1.96 6.50 86.34 0.56 2.52 16 10 N -0.61 -16.18 3.01 -817.96 -2.46 -18.64 16 11 C 0.53 20.09 7.73 87.66 0.68 20.76 16 12 O -0.57 -26.68 15.32 -3.02 -0.05 -26.72 16 13 C -0.12 -4.86 4.52 71.24 0.32 -4.54 16 14 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 15 C -0.55 -30.91 9.50 67.96 0.65 -30.27 16 16 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 17 C 0.01 0.74 5.49 84.86 0.47 1.20 16 18 N -0.91 -56.03 13.22 21.65 0.29 -55.74 16 19 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 23 C 0.12 2.57 6.59 86.35 0.57 3.14 16 24 C 0.05 0.87 5.61 86.38 0.49 1.36 16 25 C -0.04 -0.55 7.25 86.37 0.63 0.07 16 26 H 0.24 2.10 7.80 -4.42 -0.03 2.07 16 27 H 0.11 1.14 8.08 -2.38 -0.02 1.12 16 28 H 0.07 0.89 7.39 -2.39 -0.02 0.87 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.69 6.01 -2.39 -0.01 0.67 16 31 H 0.12 1.34 8.04 -2.39 -0.02 1.32 16 32 H 0.03 0.60 6.45 -2.39 -0.02 0.59 16 33 H 0.11 1.08 6.06 -2.38 -0.01 1.06 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.72 6.02 -2.39 -0.01 1.71 16 36 H 0.11 3.79 7.66 -2.39 -0.02 3.77 16 37 H 0.11 3.87 8.00 -2.40 -0.02 3.86 16 38 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 2.05 7.07 -2.38 -0.02 2.03 16 41 H 0.11 1.38 8.04 -2.39 -0.02 1.36 16 42 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.08 1.18 4.99 -2.39 -0.01 1.17 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -77.88 369.61 -2.27 -80.15 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 1.00 Total: 15.39 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 7.87 Total: -6.04 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -11.96 Total: -98.26 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.72 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -77.88 -2.27 -80.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674039416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.745 kcal (2) G-P(sol) polarization free energy of solvation -77.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds