Wall clock time and date at job start Fri Apr 10 2020 18:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46739 * 2 1 4 4 N 1.33696 * 126.27150 * 270.13130 * 3 2 1 5 5 C 1.30618 * 108.99058 * 180.26175 * 4 3 2 6 6 O 1.33662 * 109.15897 * 359.77037 * 5 4 3 7 7 C 1.35343 * 107.68353 * 359.97438 * 6 5 4 8 8 C 1.46717 * 126.64623 * 179.97438 * 7 6 5 9 9 O 1.21684 * 120.00495 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99839 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99795 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53009 * 109.55147 * 60.13157 * 12 11 10 14 14 C 1.53290 * 109.51589 * 180.25438 * 12 11 10 15 15 N 1.47232 * 108.40967 * 172.23172 * 14 12 11 16 16 C 1.36937 * 121.03256 * 129.46000 * 15 14 12 17 17 H 1.07999 * 119.99830 * 333.77469 * 16 15 14 18 18 C 1.38814 * 119.99671 * 153.77042 * 16 15 14 19 19 N 1.31617 * 119.99660 * 160.02496 * 18 16 15 20 20 Si 1.86793 * 120.00266 * 340.02129 * 18 16 15 21 21 H 1.48503 * 109.46760 * 91.88567 * 20 18 16 22 22 H 1.48497 * 109.47347 * 211.88792 * 20 18 16 23 23 H 1.48498 * 109.47201 * 331.89168 * 20 18 16 24 24 C 1.47155 * 117.98347 * 309.49012 * 15 14 12 25 25 C 1.53294 * 108.41729 * 50.51829 * 24 15 14 26 26 O 1.42960 * 109.51742 * 300.00673 * 12 11 10 27 27 H 1.08997 * 109.47288 * 300.00482 * 1 2 3 28 28 H 1.09003 * 109.46817 * 60.00238 * 1 2 3 29 29 H 1.09000 * 109.47103 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47055 * 240.00015 * 2 1 3 31 31 H 1.09003 * 109.46817 * 119.99762 * 2 1 3 32 32 H 1.08009 * 125.41796 * 179.74669 * 5 4 3 33 33 H 0.96992 * 120.00110 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47116 * 60.00866 * 11 10 8 35 35 H 1.08996 * 109.47601 * 300.00641 * 11 10 8 36 36 H 1.08996 * 109.46656 * 299.86994 * 13 12 11 37 37 H 1.08998 * 109.46877 * 59.87220 * 13 12 11 38 38 H 1.09001 * 109.46700 * 179.87487 * 13 12 11 39 39 H 1.09001 * 109.68378 * 291.95518 * 14 12 11 40 40 H 1.09000 * 109.68200 * 52.50646 * 14 12 11 41 41 H 0.97002 * 120.00062 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.68049 * 290.77118 * 24 15 14 43 43 H 1.09003 * 109.67731 * 170.25941 * 24 15 14 44 44 H 1.08998 * 109.51349 * 67.59796 * 25 24 15 45 45 H 1.08996 * 109.51070 * 187.70400 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2936 2.1674 -1.0779 5 6 2.7154 3.3412 -0.6899 6 8 2.7317 3.3819 0.6460 7 6 2.3007 2.1816 1.0992 8 6 2.1570 1.7753 2.5016 9 8 1.7564 0.6589 2.7737 10 7 2.4685 2.6386 3.4887 11 6 2.3244 2.2330 4.8890 12 6 2.7406 3.3894 5.8002 13 6 1.8471 4.6017 5.5297 14 6 2.5963 2.9640 7.2658 15 7 3.1760 4.0178 8.1151 16 6 2.4761 4.5386 9.1706 17 1 1.3962 4.5237 9.1623 18 6 3.1546 5.0854 10.2511 19 7 2.5382 5.9198 11.0612 20 14 4.9422 4.6372 10.5554 21 1 5.8219 5.6209 9.8743 22 1 5.2157 4.6557 12.0148 23 1 5.2102 3.2788 10.0187 24 6 4.5307 4.4952 7.7951 25 6 4.5807 4.8461 6.3037 26 8 4.1038 3.7340 5.5422 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0053 4.1499 -1.3444 33 1 2.7874 3.5285 3.2718 34 1 2.9600 1.3693 5.0844 35 1 1.2849 1.9713 5.0864 36 1 1.9537 4.9064 4.4886 37 1 0.8079 4.3382 5.7266 38 1 2.1433 5.4239 6.1811 39 1 1.5414 2.8360 7.5088 40 1 3.1277 2.0266 7.4301 41 1 3.0122 6.3017 11.8165 42 1 5.2568 3.7119 8.0125 43 1 4.7574 5.3809 8.3885 44 1 3.9509 5.7149 6.1127 45 1 5.6080 5.0710 6.0169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108201563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:04 Heat of formation + Delta-G solvation = -27.850581 kcal Electronic energy + Delta-G solvation = -28171.686534 eV Core-core repulsion = 24192.251249 eV Total energy + Delta-G solvation = -3979.435285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.73751 -40.01721 -39.03125 -36.14526 -35.22544 -34.51475 -33.20961 -32.30218 -31.48905 -29.98232 -28.47282 -26.89426 -26.13776 -24.48496 -23.78690 -23.22541 -21.98136 -21.21325 -20.68466 -19.24322 -18.43515 -17.16961 -17.06169 -16.78215 -16.41970 -15.80401 -15.61868 -15.16444 -14.94316 -14.71598 -14.41279 -14.20732 -14.03514 -13.91017 -13.63774 -13.52860 -12.96002 -12.85834 -12.48169 -12.38663 -11.94157 -11.77791 -11.66601 -11.51780 -11.40896 -11.29918 -11.14515 -11.09148 -10.88783 -10.46385 -10.35339 -10.26536 -9.75339 -9.59196 -9.47848 -9.40220 -9.05190 -8.64399 -7.09416 -6.04815 -3.42458 0.55751 2.13533 2.18698 2.89452 3.03038 3.22899 3.42067 3.44548 3.71086 3.94165 4.38760 4.42944 4.52468 4.65584 4.98859 5.07992 5.10542 5.13535 5.18031 5.23043 5.24416 5.31514 5.45063 5.61749 5.71141 5.73374 5.75069 5.76969 5.82156 5.90535 5.95797 5.99788 6.06797 6.14621 6.16453 6.26297 6.40620 6.42365 6.51072 6.67158 7.12736 7.36684 7.53866 7.77721 7.88845 8.20380 8.77999 9.59125 9.94706 11.10693 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028313 B = 0.002785 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.690310 B =10052.679174 C =10415.251768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C 0.080 3.920 4 N -0.492 5.492 5 C 0.199 3.801 6 O -0.190 6.190 7 C -0.109 4.109 8 C 0.605 3.395 9 O -0.515 6.515 10 N -0.703 5.703 11 C 0.137 3.863 12 C 0.086 3.914 13 C -0.168 4.168 14 C 0.131 3.869 15 N -0.603 5.603 16 C -0.261 4.261 17 H 0.089 0.911 18 C 0.024 3.976 19 N -0.906 5.906 20 Si 0.884 3.116 21 H -0.288 1.288 22 H -0.302 1.302 23 H -0.270 1.270 24 C 0.089 3.911 25 C 0.046 3.954 26 O -0.380 6.380 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.256 0.744 33 H 0.409 0.591 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.034 0.966 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 -5.137 -22.375 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C -0.044 4.044 4 N -0.221 5.221 5 C -0.026 4.026 6 O -0.076 6.076 7 C -0.164 4.164 8 C 0.389 3.611 9 O -0.393 6.393 10 N -0.354 5.354 11 C 0.014 3.986 12 C 0.045 3.955 13 C -0.226 4.226 14 C 0.005 3.995 15 N -0.328 5.328 16 C -0.389 4.389 17 H 0.106 0.894 18 C -0.175 4.175 19 N -0.549 5.549 20 Si 0.714 3.286 21 H -0.216 1.216 22 H -0.230 1.230 23 H -0.195 1.195 24 C -0.037 4.037 25 C -0.032 4.032 26 O -0.300 6.300 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.272 0.728 33 H 0.245 0.755 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.192 -6.037 -22.666 23.457 hybrid contribution 1.319 0.966 0.947 1.889 sum 1.127 -5.071 -21.719 22.332 Atomic orbital electron populations 1.21638 0.93744 1.02333 1.02015 1.20171 0.96708 0.87693 1.04416 1.22071 0.97787 0.98209 0.86309 1.70346 1.17036 1.03279 1.31463 1.28338 0.97196 0.97631 0.79449 1.84512 1.64414 1.34184 1.24448 1.23002 1.11724 0.85266 0.96407 1.16308 0.78530 0.84900 0.81318 1.90866 1.47097 1.19575 1.81809 1.45844 1.65918 1.17385 1.06227 1.21476 1.02113 0.97027 0.78000 1.22243 0.83039 0.93992 0.96263 1.22272 0.99954 0.99440 1.00887 1.21469 0.99129 0.91351 0.87599 1.44319 1.14372 1.41268 1.32846 1.18887 0.91739 1.33894 0.94376 0.89362 1.25240 0.97748 0.98313 0.96182 1.69816 1.37392 1.29866 1.17818 0.86974 0.86163 0.79303 0.76116 1.21625 1.23045 1.19532 1.22033 0.88088 0.99077 0.94490 1.23098 0.98624 0.88755 0.92731 1.87840 1.26333 1.51121 1.64681 0.92286 0.92785 0.91637 0.90113 0.88096 0.72835 0.75525 0.90208 0.89450 0.93400 0.91641 0.90075 0.90702 0.94731 0.92625 0.94776 0.90061 0.92527 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.89 37.16 0.37 -0.94 16 2 C -0.05 -0.54 5.92 -27.88 -0.17 -0.70 16 3 C 0.08 0.93 6.41 -82.46 -0.53 0.40 16 4 N -0.49 -5.25 11.26 -10.88 -0.12 -5.37 16 5 C 0.20 1.56 13.21 52.25 0.69 2.25 16 6 O -0.19 -1.91 10.57 4.43 0.05 -1.87 16 7 C -0.11 -1.30 7.18 -36.84 -0.26 -1.57 16 8 C 0.60 8.01 7.79 -12.83 -0.10 7.91 16 9 O -0.52 -7.77 14.80 5.20 0.08 -7.69 16 10 N -0.70 -8.82 5.15 -61.61 -0.32 -9.14 16 11 C 0.14 1.85 4.82 -4.04 -0.02 1.83 16 12 C 0.09 1.33 0.76 -90.47 -0.07 1.26 16 13 C -0.17 -2.48 7.92 37.16 0.29 -2.18 16 14 C 0.13 2.44 5.41 -3.49 -0.02 2.42 16 15 N -0.60 -13.59 2.35 -171.76 -0.40 -14.00 16 16 C -0.26 -6.95 10.10 -15.06 -0.15 -7.10 16 17 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 18 C 0.02 0.68 5.26 -17.43 -0.09 0.59 16 19 N -0.91 -26.95 13.97 55.49 0.78 -26.17 16 20 Si 0.88 21.77 24.28 -169.99 -4.13 17.65 16 21 H -0.29 -6.78 6.58 56.52 0.37 -6.41 16 22 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 23 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 24 C 0.09 1.85 4.38 -3.53 -0.02 1.83 16 25 C 0.05 0.77 6.60 37.31 0.25 1.02 16 26 O -0.38 -6.29 9.97 -35.23 -0.35 -6.64 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 1.13 6.48 -51.93 -0.34 0.80 16 32 H 0.26 0.57 8.06 -52.48 -0.42 0.15 16 33 H 0.41 4.81 7.00 -40.82 -0.29 4.52 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.60 6.88 -51.93 -0.36 0.25 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.41 6.11 -51.93 -0.32 1.09 16 39 H 0.07 1.35 7.96 -51.93 -0.41 0.93 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.03 0.73 6.86 -51.93 -0.36 0.37 16 43 H 0.08 1.83 4.60 -51.93 -0.24 1.59 16 44 H 0.06 0.94 6.25 -51.93 -0.32 0.62 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -32.26 358.08 -5.33 -37.59 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.48 Total: 3.23 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 0.17 Total: 7.03 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.07 Total: -54.69 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.23 Total: -16.20 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.13 Total: 17.65 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.26 -5.33 -37.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108201563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.738 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds