Wall clock time and date at job start Fri Apr 10 2020 18:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35275 * 126.71018 * 2 1 4 4 C 1.41925 * 103.96067 * 180.02562 * 3 2 1 5 5 O 1.35708 * 126.88007 * 179.97438 * 4 3 2 6 6 C 1.42896 * 117.00234 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47362 * 179.97438 * 6 5 4 8 8 O 1.21276 * 119.99463 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00157 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99631 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.50189 * 325.06253 * 10 9 7 12 12 C 1.53045 * 109.49510 * 204.99877 * 10 9 7 13 13 C 1.53043 * 109.53611 * 178.68488 * 12 10 9 14 14 C 1.53189 * 109.31169 * 61.36870 * 13 12 10 15 15 H 1.09004 * 109.59041 * 65.14830 * 14 13 12 16 16 C 1.53002 * 109.58641 * 185.43253 * 14 13 12 17 17 N 1.46930 * 108.77615 * 305.36400 * 14 13 12 18 18 C 1.36938 * 120.62941 * 233.59058 * 17 14 13 19 19 H 1.08003 * 120.00074 * 28.66025 * 18 17 14 20 20 C 1.38806 * 120.00009 * 208.66147 * 18 17 14 21 21 N 1.31618 * 120.00330 * 14.69834 * 20 18 17 22 22 Si 1.86808 * 119.99950 * 194.70269 * 20 18 17 23 23 H 1.48493 * 109.47241 * 59.99840 * 22 20 18 24 24 H 1.48501 * 109.46673 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47000 * 299.99393 * 22 20 18 26 26 C 1.46922 * 118.74242 * 53.60581 * 17 14 13 27 27 N 1.30621 * 106.24270 * 0.23529 * 4 3 2 28 28 O 1.20913 * 111.49843 * 359.57467 * 27 4 3 29 29 H 1.09005 * 109.46987 * 90.00490 * 1 2 3 30 30 H 1.09004 * 109.47276 * 210.00344 * 1 2 3 31 31 H 1.08997 * 109.47161 * 330.00456 * 1 2 3 32 32 H 1.07998 * 128.01411 * 0.03127 * 3 2 1 33 33 H 1.08998 * 109.47710 * 59.99564 * 6 5 4 34 34 H 1.09007 * 109.46851 * 299.99171 * 6 5 4 35 35 H 0.97000 * 119.99837 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.45816 * 298.70581 * 12 10 9 37 37 H 1.09005 * 109.45814 * 58.66581 * 12 10 9 38 38 H 1.09002 * 109.49233 * 181.31572 * 13 12 10 39 39 H 1.08995 * 109.49646 * 301.38280 * 13 12 10 40 40 H 1.09001 * 109.46984 * 60.00025 * 16 14 13 41 41 H 1.08996 * 109.47239 * 179.97438 * 16 14 13 42 42 H 1.09000 * 109.47044 * 299.99748 * 16 14 13 43 43 H 0.96995 * 120.00650 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.59382 * 186.60504 * 26 17 14 45 45 H 1.09001 * 109.58250 * 66.17676 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6244 0.5356 -0.0006 5 8 4.7953 1.2218 -0.0013 6 6 5.9988 0.4513 -0.0024 7 6 7.1880 1.3770 -0.0037 8 8 7.0212 2.5783 -0.0042 9 7 8.4367 0.8700 -0.0044 10 6 9.5927 1.7700 -0.0062 11 1 9.3618 2.6576 -0.5952 12 6 10.7984 1.0515 -0.6164 13 6 11.9977 2.0016 -0.6488 14 6 12.3549 2.4157 0.7822 15 1 12.6953 1.5437 1.3408 16 6 13.4642 3.4690 0.7496 17 7 11.1584 2.9760 1.4250 18 6 11.1945 4.2152 2.0067 19 1 11.8763 4.9662 1.6358 20 6 10.3548 4.5060 3.0730 21 7 9.7404 3.5327 3.7114 22 14 10.0965 6.2789 3.6019 23 1 9.5236 7.0540 2.4723 24 1 9.1613 6.3203 4.7547 25 1 11.3988 6.8717 3.9989 26 6 9.9225 2.1815 1.4320 27 7 3.4764 -0.7622 -0.0061 28 8 2.3085 -1.0750 -0.0004 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 2.0311 2.1263 0.0005 33 1 6.0271 -0.1772 -0.8925 34 1 6.0284 -0.1775 0.8875 35 1 8.5700 -0.0908 -0.0044 36 1 11.0437 0.1775 -0.0131 37 1 10.5576 0.7359 -1.6315 38 1 12.8495 1.4968 -1.1048 39 1 11.7447 2.8871 -1.2319 40 1 13.1201 4.3420 0.1950 41 1 13.7165 3.7625 1.7685 42 1 14.3459 3.0531 0.2620 43 1 9.1533 3.7359 4.4563 44 1 9.1062 2.7790 1.8375 45 1 10.0646 1.2904 2.0435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132116804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:44 Heat of formation + Delta-G solvation = 15.113980 kcal Electronic energy + Delta-G solvation = -27494.726123 eV Core-core repulsion = 23517.153921 eV Total energy + Delta-G solvation = -3977.572202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.05593 -39.88459 -38.61419 -37.43322 -34.44267 -34.05876 -32.82838 -32.69249 -31.01113 -29.87048 -28.63009 -27.91860 -25.83626 -24.85416 -23.57788 -22.31406 -21.74455 -20.66341 -20.10294 -19.25340 -18.09932 -18.01432 -17.03253 -16.73503 -16.43789 -16.08709 -15.51262 -15.08184 -14.40673 -14.12339 -14.06463 -13.84824 -13.78656 -13.64509 -13.55939 -13.36883 -12.98384 -12.77074 -12.69185 -12.39658 -11.90672 -11.79712 -11.42647 -11.27893 -11.12631 -10.87841 -10.67714 -10.53574 -10.40172 -10.26633 -9.95767 -9.77810 -9.71992 -9.47505 -9.40495 -9.33590 -8.60097 -8.40021 -6.61018 -5.71856 -3.16594 1.20992 2.11880 2.32439 2.86090 2.90052 3.44169 3.50709 3.52505 3.62636 4.02819 4.54658 4.56014 4.73658 4.79788 4.94863 4.97992 5.01302 5.04483 5.29477 5.32967 5.36978 5.43273 5.48782 5.57103 5.66561 5.68006 5.95726 6.09172 6.26290 6.29048 6.38501 6.44384 6.48009 6.61938 6.72245 6.82057 6.91603 7.04397 7.12578 7.31587 7.75469 7.79700 7.88430 8.06913 8.49428 8.53666 9.26204 9.90557 10.45056 11.36114 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015492 B = 0.002899 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.995188 B = 9654.554982 C =11070.028999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 C -0.232 4.232 4 C 0.216 3.784 5 O -0.254 6.254 6 C 0.047 3.953 7 C 0.512 3.488 8 O -0.509 6.509 9 N -0.715 5.715 10 C 0.118 3.882 11 H 0.083 0.917 12 C -0.116 4.116 13 C -0.126 4.126 14 C 0.165 3.835 15 H 0.025 0.975 16 C -0.137 4.137 17 N -0.583 5.583 18 C -0.253 4.253 19 H 0.071 0.929 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.166 3.834 27 N -0.413 5.413 28 O 0.096 5.904 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.179 0.821 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.394 0.606 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.253 0.747 44 H 0.097 0.903 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.861 -10.949 -9.668 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.254 4.254 4 C 0.018 3.982 5 O -0.158 6.158 6 C -0.032 4.032 7 C 0.296 3.704 8 O -0.383 6.383 9 N -0.367 5.367 10 C 0.013 3.987 11 H 0.101 0.899 12 C -0.154 4.154 13 C -0.166 4.166 14 C 0.058 3.942 15 H 0.043 0.957 16 C -0.194 4.194 17 N -0.307 5.307 18 C -0.383 4.383 19 H 0.088 0.912 20 C -0.193 4.193 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.039 3.961 27 N -0.142 5.142 28 O 0.036 5.964 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.196 0.804 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.227 0.773 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.115 0.885 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -12.159 -10.721 -9.507 18.792 hybrid contribution -0.309 0.919 0.383 1.042 sum -12.468 -9.802 -9.124 18.297 Atomic orbital electron populations 1.20368 0.83546 1.04910 1.04297 1.24331 0.96445 0.85638 1.01174 1.21830 0.88375 1.01764 1.13399 1.22097 0.88644 0.87967 0.99441 1.86322 1.09983 1.30721 1.88777 1.22540 0.82513 0.93822 1.04359 1.19766 0.83777 0.89017 0.77882 1.90801 1.85279 1.14952 1.47221 1.45907 1.05242 1.10273 1.75318 1.22067 0.82409 0.91937 1.02257 0.89874 1.21686 0.95550 0.98760 0.99433 1.22051 0.96120 0.98639 0.99783 1.20490 0.88361 0.94672 0.90667 0.95738 1.21800 0.96502 0.99099 1.02003 1.44017 1.04083 1.17573 1.64988 1.19106 1.21539 0.88445 1.09179 0.91186 1.25074 1.01037 0.97309 0.95927 1.69969 1.32784 1.30070 1.21755 0.86375 0.77611 0.84960 0.77858 1.20908 1.21665 1.20953 1.21120 0.91140 0.94960 0.88859 1.74153 0.97840 1.14267 1.27938 1.84777 1.10337 1.31978 1.69269 0.89164 0.89575 0.88784 0.80372 0.88995 0.88673 0.77285 0.92184 0.93028 0.92609 0.92034 0.92764 0.92011 0.94307 0.93664 0.88469 0.96477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.45 36.00 0.38 0.08 16 2 C -0.01 -0.11 7.48 -35.36 -0.26 -0.37 16 3 C -0.23 -2.58 11.10 -39.23 -0.44 -3.01 16 4 C 0.22 3.10 8.01 -16.66 -0.13 2.97 16 5 O -0.25 -4.23 9.74 -38.74 -0.38 -4.61 16 6 C 0.05 0.68 6.14 36.01 0.22 0.90 16 7 C 0.51 9.32 7.87 -10.98 -0.09 9.23 16 8 O -0.51 -11.95 16.16 -14.35 -0.23 -12.19 16 9 N -0.71 -11.65 5.08 -53.69 -0.27 -11.93 16 10 C 0.12 2.30 2.61 -67.81 -0.18 2.13 16 11 H 0.08 1.86 7.58 -51.93 -0.39 1.46 16 12 C -0.12 -1.86 5.35 -26.69 -0.14 -2.00 16 13 C -0.13 -2.14 5.37 -26.61 -0.14 -2.28 16 14 C 0.16 3.38 3.49 -67.60 -0.24 3.14 16 15 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 16 C -0.14 -2.57 7.95 37.16 0.30 -2.27 16 17 N -0.58 -14.62 2.99 -164.78 -0.49 -15.12 16 18 C -0.25 -6.99 8.63 -15.06 -0.13 -7.12 16 19 H 0.07 1.88 6.20 -52.48 -0.33 1.55 16 20 C 0.01 0.15 4.97 -17.43 -0.09 0.07 16 21 N -0.90 -27.03 11.09 55.49 0.62 -26.42 16 22 Si 0.90 22.71 29.58 -169.99 -5.03 17.68 16 23 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.17 4.06 4.87 -3.71 -0.02 4.04 16 27 N -0.41 -5.64 11.54 30.38 0.35 -5.29 16 28 O 0.10 1.10 11.19 17.05 0.19 1.29 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.39 4.85 8.60 -40.82 -0.35 4.50 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.04 7.41 -51.93 -0.39 0.65 16 41 H 0.06 1.25 7.66 -51.93 -0.40 0.86 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.10 2.82 6.02 -51.93 -0.31 2.51 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -35.43 370.52 -7.42 -42.85 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.80 Total: 2.65 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.96 Total: 5.48 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.20 Total: -58.75 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.42 Total: -15.51 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.43 -7.42 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132116804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.968 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds