Wall clock time and date at job start Fri Apr 10 2020 18:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35275 * 126.71018 * 2 1 4 4 C 1.41925 * 103.96067 * 180.02562 * 3 2 1 5 5 O 1.35708 * 126.88007 * 179.97438 * 4 3 2 6 6 C 1.42896 * 117.00234 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47362 * 179.97438 * 6 5 4 8 8 O 1.21276 * 119.99463 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00157 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99631 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.50189 * 325.06253 * 10 9 7 12 12 C 1.53045 * 109.49510 * 204.99877 * 10 9 7 13 13 C 1.53043 * 109.53611 * 178.68488 * 12 10 9 14 14 C 1.53189 * 109.31169 * 61.36870 * 13 12 10 15 15 H 1.09004 * 109.59041 * 65.14830 * 14 13 12 16 16 C 1.53002 * 109.58641 * 185.43253 * 14 13 12 17 17 N 1.46930 * 108.77615 * 305.36400 * 14 13 12 18 18 C 1.36938 * 120.62941 * 233.59058 * 17 14 13 19 19 H 1.08003 * 120.00074 * 28.66025 * 18 17 14 20 20 C 1.38806 * 120.00009 * 208.66147 * 18 17 14 21 21 N 1.31618 * 120.00330 * 14.69834 * 20 18 17 22 22 Si 1.86808 * 119.99950 * 194.70269 * 20 18 17 23 23 H 1.48493 * 109.47241 * 59.99840 * 22 20 18 24 24 H 1.48501 * 109.46673 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47000 * 299.99393 * 22 20 18 26 26 C 1.46922 * 118.74242 * 53.60581 * 17 14 13 27 27 N 1.30621 * 106.24270 * 0.23529 * 4 3 2 28 28 O 1.20913 * 111.49843 * 359.57467 * 27 4 3 29 29 H 1.09005 * 109.46987 * 90.00490 * 1 2 3 30 30 H 1.09004 * 109.47276 * 210.00344 * 1 2 3 31 31 H 1.08997 * 109.47161 * 330.00456 * 1 2 3 32 32 H 1.07998 * 128.01411 * 0.03127 * 3 2 1 33 33 H 1.08998 * 109.47710 * 59.99564 * 6 5 4 34 34 H 1.09007 * 109.46851 * 299.99171 * 6 5 4 35 35 H 0.97000 * 119.99837 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.45816 * 298.70581 * 12 10 9 37 37 H 1.09005 * 109.45814 * 58.66581 * 12 10 9 38 38 H 1.09002 * 109.49233 * 181.31572 * 13 12 10 39 39 H 1.08995 * 109.49646 * 301.38280 * 13 12 10 40 40 H 1.09001 * 109.46984 * 60.00025 * 16 14 13 41 41 H 1.08996 * 109.47239 * 179.97438 * 16 14 13 42 42 H 1.09000 * 109.47044 * 299.99748 * 16 14 13 43 43 H 0.96995 * 120.00650 * 180.02562 * 21 20 18 44 44 H 1.08992 * 109.59382 * 186.60504 * 26 17 14 45 45 H 1.09001 * 109.58250 * 66.17676 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6244 0.5356 -0.0006 5 8 4.7953 1.2218 -0.0013 6 6 5.9988 0.4513 -0.0024 7 6 7.1880 1.3770 -0.0037 8 8 7.0212 2.5783 -0.0042 9 7 8.4367 0.8700 -0.0044 10 6 9.5927 1.7700 -0.0062 11 1 9.3618 2.6576 -0.5952 12 6 10.7984 1.0515 -0.6164 13 6 11.9977 2.0016 -0.6488 14 6 12.3549 2.4157 0.7822 15 1 12.6953 1.5437 1.3408 16 6 13.4642 3.4690 0.7496 17 7 11.1584 2.9760 1.4250 18 6 11.1945 4.2152 2.0067 19 1 11.8763 4.9662 1.6358 20 6 10.3548 4.5060 3.0730 21 7 9.7404 3.5327 3.7114 22 14 10.0965 6.2789 3.6019 23 1 9.5236 7.0540 2.4723 24 1 9.1613 6.3203 4.7547 25 1 11.3988 6.8717 3.9989 26 6 9.9225 2.1815 1.4320 27 7 3.4764 -0.7622 -0.0061 28 8 2.3085 -1.0750 -0.0004 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 2.0311 2.1263 0.0005 33 1 6.0271 -0.1772 -0.8925 34 1 6.0284 -0.1775 0.8875 35 1 8.5700 -0.0908 -0.0044 36 1 11.0437 0.1775 -0.0131 37 1 10.5576 0.7359 -1.6315 38 1 12.8495 1.4968 -1.1048 39 1 11.7447 2.8871 -1.2319 40 1 13.1201 4.3420 0.1950 41 1 13.7165 3.7625 1.7685 42 1 14.3459 3.0531 0.2620 43 1 9.1533 3.7359 4.4563 44 1 9.1062 2.7790 1.8375 45 1 10.0646 1.2904 2.0435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132116804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:43 Heat of formation + Delta-G solvation = -11.156528 kcal Electronic energy + Delta-G solvation = -27495.865298 eV Core-core repulsion = 23517.153921 eV Total energy + Delta-G solvation = -3978.711377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.97460 -41.31031 -39.95697 -39.02199 -36.09760 -34.80904 -34.70105 -33.60860 -32.54398 -31.77283 -29.81949 -28.61469 -27.63772 -26.56945 -24.51205 -24.07135 -22.92243 -22.05077 -21.60980 -20.91053 -19.09509 -18.96076 -18.39037 -18.15788 -17.89947 -17.35196 -17.19520 -16.72567 -15.89131 -15.74196 -15.39480 -15.27469 -15.00494 -14.92208 -14.61474 -14.42345 -14.15573 -14.10775 -13.91697 -13.54895 -13.25350 -13.11379 -12.91649 -12.76850 -12.71192 -12.58740 -12.31168 -12.16298 -12.14493 -12.01634 -11.68243 -11.46169 -11.18988 -10.98870 -10.55670 -10.53843 -10.30118 -10.19666 -8.65282 -7.87110 -5.33081 0.41892 1.15302 1.19077 1.38582 1.41796 1.44994 1.48631 2.14104 2.39730 2.49959 3.08022 3.28829 3.46801 3.71673 3.81376 3.88857 3.91738 3.94393 3.95893 4.07360 4.23281 4.36308 4.36680 4.57757 4.69352 4.75899 4.78030 4.78650 4.87162 4.89753 4.99419 5.05294 5.16150 5.25447 5.25923 5.29803 5.39041 5.53319 5.59787 5.68024 5.76087 5.81463 6.37273 6.46597 7.10819 7.15822 7.19661 7.88200 8.36557 9.17684 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015492 B = 0.002899 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.995188 B = 9654.554982 C =11070.028999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.012 3.988 3 C -0.255 4.255 4 C 0.188 3.812 5 O -0.285 6.285 6 C 0.057 3.943 7 C 0.509 3.491 8 O -0.571 6.571 9 N -0.698 5.698 10 C 0.132 3.868 11 H 0.051 0.949 12 C -0.107 4.107 13 C -0.118 4.118 14 C 0.152 3.848 15 H 0.024 0.976 16 C -0.130 4.130 17 N -0.603 5.603 18 C -0.250 4.250 19 H 0.076 0.924 20 C -0.056 4.056 21 N -0.935 5.935 22 Si 0.958 3.042 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.267 1.267 26 C 0.176 3.824 27 N -0.428 5.428 28 O 0.095 5.905 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.192 0.808 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.418 0.582 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.037 0.963 42 H 0.080 0.920 43 H 0.244 0.756 44 H 0.044 0.956 45 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.088 -12.727 -11.614 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.051 4.051 3 C -0.277 4.277 4 C -0.009 4.009 5 O -0.191 6.191 6 C -0.021 4.021 7 C 0.294 3.706 8 O -0.449 6.449 9 N -0.352 5.352 10 C 0.026 3.974 11 H 0.070 0.930 12 C -0.145 4.145 13 C -0.158 4.158 14 C 0.047 3.953 15 H 0.041 0.959 16 C -0.187 4.187 17 N -0.328 5.328 18 C -0.380 4.380 19 H 0.093 0.907 20 C -0.251 4.251 21 N -0.581 5.581 22 Si 0.786 3.214 23 H -0.213 1.213 24 H -0.224 1.224 25 H -0.192 1.192 26 C 0.049 3.951 27 N -0.157 5.157 28 O 0.035 5.965 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.209 0.791 33 H 0.142 0.858 34 H 0.128 0.872 35 H 0.255 0.745 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.099 0.901 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -12.347 -12.564 -11.481 21.027 hybrid contribution -0.282 1.407 0.963 1.728 sum -12.629 -11.158 -10.518 19.865 Atomic orbital electron populations 1.20685 0.79659 1.06578 1.06085 1.25141 0.98082 0.83956 0.97931 1.22182 0.87496 1.03217 1.14822 1.22484 0.88655 0.88729 1.01035 1.86255 1.11124 1.32265 1.89438 1.22497 0.80597 0.92552 1.06475 1.20491 0.85118 0.88726 0.76244 1.90770 1.86244 1.17827 1.50078 1.45683 1.04126 1.11218 1.74136 1.21603 0.84983 0.92366 0.98469 0.93027 1.21662 0.93019 0.98446 1.01358 1.21961 0.97983 0.98932 0.96890 1.20825 0.87085 0.94908 0.92447 0.95877 1.21737 0.97500 0.98578 1.00911 1.44318 1.05999 1.17186 1.65255 1.19461 1.20442 0.89878 1.08259 0.90656 1.25811 1.01886 1.00602 0.96826 1.70141 1.33983 1.31607 1.22397 0.85475 0.77851 0.81112 0.76926 1.21279 1.22355 1.19194 1.20804 0.89624 0.93126 0.91521 1.74126 0.99071 1.13993 1.28474 1.84732 1.10033 1.32805 1.68946 0.87054 0.87886 0.87071 0.79089 0.85809 0.87227 0.74482 0.90523 0.89395 0.88384 0.92972 0.93591 0.94356 0.90140 0.94724 0.93800 0.98174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 71.24 0.74 0.40 16 2 C 0.01 0.20 7.48 25.00 0.19 0.39 16 3 C -0.26 -5.55 11.10 22.50 0.25 -5.30 16 4 C 0.19 5.43 8.01 85.79 0.69 6.12 16 5 O -0.28 -9.82 9.74 -71.25 -0.69 -10.52 16 6 C 0.06 1.65 6.14 71.24 0.44 2.09 16 7 C 0.51 19.03 7.87 87.66 0.69 19.73 16 8 O -0.57 -28.47 16.16 16.02 0.26 -28.22 16 9 N -0.70 -22.57 5.08 -442.15 -2.25 -24.82 16 10 C 0.13 5.16 2.61 45.07 0.12 5.28 16 11 H 0.05 2.38 7.58 -2.39 -0.02 2.36 16 12 C -0.11 -3.11 5.35 30.62 0.16 -2.94 16 13 C -0.12 -3.65 5.37 30.67 0.16 -3.48 16 14 C 0.15 6.06 3.49 44.97 0.16 6.21 16 15 H 0.02 0.94 8.14 -2.38 -0.02 0.93 16 16 C -0.13 -4.68 7.95 71.98 0.57 -4.10 16 17 N -0.60 -30.91 2.99 -675.23 -2.02 -32.93 16 18 C -0.25 -14.21 8.63 84.03 0.73 -13.48 16 19 H 0.08 4.11 6.20 -2.91 -0.02 4.09 16 20 C -0.06 -3.36 4.97 84.86 0.42 -2.94 16 21 N -0.93 -59.05 11.09 21.65 0.24 -58.81 16 22 Si 0.96 48.44 29.58 68.60 2.03 50.47 16 23 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 26 C 0.18 8.96 4.87 86.36 0.42 9.38 16 27 N -0.43 -11.46 11.54 -172.59 -1.99 -13.45 16 28 O 0.09 2.04 11.19 71.20 0.80 2.84 16 29 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.19 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.11 2.83 8.14 -2.38 -0.02 2.82 16 35 H 0.42 9.50 8.60 -92.71 -0.80 8.71 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.70 7.41 -2.39 -0.02 1.69 16 41 H 0.04 1.53 7.66 -2.39 -0.02 1.51 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.24 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.04 2.71 6.02 -2.39 -0.01 2.69 16 45 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -84.50 370.52 2.32 -82.18 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.21 Total: 15.92 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.74 Total: 17.34 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -6.02 Total: -130.01 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: 0.36 Total: -35.89 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.47 kcal Total: -84.50 2.32 -82.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132116804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.023 kcal (2) G-P(sol) polarization free energy of solvation -84.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds