Wall clock time and date at job start Fri Apr 10 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47258 * 2 1 4 4 C 1.50697 * 109.47313 * 180.02562 * 3 2 1 5 5 O 1.33648 * 125.80034 * 269.97741 * 4 3 2 6 6 C 1.34222 * 110.90963 * 180.02562 * 5 4 3 7 7 C 1.34179 * 109.12131 * 359.97438 * 6 5 4 8 8 C 1.36423 * 125.80158 * 90.34727 * 4 3 2 9 9 C 1.47375 * 127.19268 * 359.97438 * 8 4 3 10 10 O 1.21614 * 120.00379 * 0.16941 * 9 8 4 11 11 N 1.34771 * 119.99946 * 180.17268 * 9 8 4 12 12 C 1.46501 * 120.00313 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47600 * 179.97438 * 12 11 9 14 14 N 1.46894 * 109.47110 * 179.97438 * 13 12 11 15 15 C 1.46903 * 110.99915 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47218 * 180.02562 * 15 14 13 17 17 O 1.21293 * 120.00278 * 359.97438 * 16 15 14 18 18 N 1.34784 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00006 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00010 * 359.97438 * 19 18 16 21 21 C 1.38944 * 119.99819 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00464 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99980 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47050 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47140 * 119.99864 * 23 21 19 26 26 H 1.48504 * 109.46915 * 240.00090 * 23 21 19 27 27 H 1.09003 * 109.46806 * 300.00496 * 1 2 3 28 28 H 1.08997 * 109.47224 * 59.99633 * 1 2 3 29 29 H 1.08993 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46899 * 239.99985 * 2 1 3 31 31 H 1.08998 * 109.46728 * 120.00210 * 2 1 3 32 32 H 1.08998 * 109.47611 * 59.99515 * 3 2 1 33 33 H 1.09005 * 109.47043 * 300.00340 * 3 2 1 34 34 H 1.08003 * 125.43772 * 179.97438 * 6 5 4 35 35 H 1.08002 * 127.01820 * 179.97438 * 7 6 5 36 36 H 0.97003 * 120.00464 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46840 * 300.00112 * 12 11 9 38 38 H 1.08998 * 109.47265 * 59.99588 * 12 11 9 39 39 H 1.08992 * 109.46983 * 300.00322 * 13 12 11 40 40 H 1.09006 * 109.46784 * 59.99925 * 13 12 11 41 41 H 1.00900 * 110.99893 * 56.05503 * 14 13 12 42 42 H 1.09001 * 109.46992 * 300.00735 * 15 14 13 43 43 H 1.09000 * 109.47226 * 60.00331 * 15 14 13 44 44 H 0.96996 * 119.99601 * 359.97438 * 18 16 15 45 45 H 0.97001 * 120.00401 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.3293 1.4427 1.0830 6 6 5.6263 1.4432 0.7375 7 6 5.7247 1.4427 -0.6006 8 6 4.3446 1.4493 -1.1074 9 6 3.9130 1.4576 -2.5165 10 8 2.7279 1.4619 -2.7895 11 7 4.8316 1.4603 -3.5026 12 6 4.4027 1.4679 -4.9034 13 6 5.6325 1.4701 -5.8135 14 7 5.2023 1.4772 -7.2180 15 6 6.3594 1.4789 -8.1231 16 6 5.8798 1.4868 -9.5517 17 8 4.6910 1.4900 -9.7923 18 7 6.7718 1.4891 -10.5621 19 6 6.3355 1.4968 -11.8617 20 1 5.2770 1.5005 -12.0759 21 6 7.2552 1.4997 -12.9032 22 7 8.5432 1.4956 -12.6426 23 14 6.6607 1.5094 -14.6741 24 1 5.1759 1.5122 -14.6978 25 1 7.1694 2.7241 -15.3604 26 1 7.1641 0.2990 -15.3719 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 6.4579 1.4439 1.4267 35 1 6.6324 1.4433 -1.1859 36 1 5.7769 1.4571 -3.2850 37 1 3.8030 0.5801 -5.1045 38 1 3.8068 2.3600 -5.0961 39 1 6.2318 2.3580 -5.6122 40 1 6.2287 0.5781 -5.6209 41 1 4.5946 2.2604 -7.4061 42 1 6.9639 2.3669 -7.9382 43 1 6.9604 0.5870 -7.9462 44 1 7.7225 1.4861 -10.3696 45 1 9.1852 1.4973 -13.3698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147749709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:50 Heat of formation + Delta-G solvation = -72.385415 kcal Electronic energy + Delta-G solvation = -25697.640098 eV Core-core repulsion = 21716.273638 eV Total energy + Delta-G solvation = -3981.366461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.95607 -39.59715 -38.32261 -36.36503 -35.49873 -34.36051 -33.78389 -33.12487 -31.24385 -30.67673 -29.46253 -26.95009 -25.97862 -24.21588 -23.26526 -22.25504 -22.06787 -21.16162 -20.02765 -19.27638 -18.25510 -17.89982 -16.61567 -16.38474 -16.15239 -16.03141 -15.80811 -15.37475 -15.09325 -14.96412 -14.53382 -14.22215 -13.89809 -13.83924 -13.51263 -13.43257 -13.34602 -13.24864 -12.99112 -12.42005 -12.29824 -11.93195 -11.78402 -11.60484 -11.53000 -11.46391 -11.43347 -11.05642 -11.00550 -10.34560 -10.23668 -10.19552 -10.15658 -9.53159 -9.27155 -8.92171 -8.51291 -8.13838 -7.97503 -6.42873 -3.83647 1.04013 1.67141 2.40922 2.95508 3.13944 3.16077 3.26852 3.34480 3.88939 4.07650 4.12097 4.36633 4.44608 4.48641 4.65626 4.71288 4.85377 4.91751 4.97873 5.08137 5.16562 5.17707 5.25271 5.35534 5.38602 5.40928 5.50924 5.57594 5.71716 5.81240 5.81508 5.85654 5.90591 5.92308 5.94596 5.98381 6.20351 6.26746 6.64971 7.08915 7.31293 7.54724 7.56316 8.03943 8.05329 8.59856 9.16930 9.52755 10.04060 10.74897 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027361 B = 0.001672 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.114582 B =16746.546298 C =17629.511045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.050 4.050 4 C 0.083 3.917 5 O -0.176 6.176 6 C -0.039 4.039 7 C -0.189 4.189 8 C -0.244 4.244 9 C 0.589 3.411 10 O -0.537 6.537 11 N -0.721 5.721 12 C 0.122 3.878 13 C 0.049 3.951 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.208 0.792 35 H 0.157 0.843 36 H 0.399 0.601 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.353 0.647 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 0.049 29.783 29.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.087 4.087 4 C 0.030 3.970 5 O -0.071 6.071 6 C -0.104 4.104 7 C -0.209 4.209 8 C -0.249 4.249 9 C 0.377 3.623 10 O -0.415 6.415 11 N -0.373 5.373 12 C -0.002 4.002 13 C -0.081 4.081 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.225 0.775 35 H 0.175 0.825 36 H 0.233 0.767 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.106 -0.625 29.507 29.952 hybrid contribution 1.772 0.909 -0.745 2.127 sum -3.334 0.284 28.762 28.956 Atomic orbital electron populations 1.21738 0.94795 1.02079 1.02158 1.21441 0.96512 0.94744 1.02571 1.20542 0.83339 0.99566 1.05253 1.22881 0.93878 0.97229 0.83061 1.83781 1.17130 1.71180 1.35047 1.23876 0.83580 1.06566 0.96414 1.22879 0.96622 1.06752 0.94616 1.21163 0.93300 1.16514 0.93878 1.17143 0.85472 0.76071 0.83625 1.90782 1.16431 1.50333 1.83969 1.45681 1.09698 1.75677 1.06249 1.21292 0.96958 1.03547 0.78411 1.22076 0.95879 1.01025 0.89103 1.59928 1.17916 1.51496 1.00507 1.21671 0.92367 1.01343 0.92652 1.19779 0.87103 0.84597 0.85991 1.90535 1.16257 1.55291 1.84486 1.41862 1.08360 1.64365 1.05439 1.19766 0.94724 1.47434 0.80917 0.87812 1.25268 0.94906 0.97313 1.00497 1.69618 1.00558 1.50703 1.33458 0.85791 0.79130 0.77692 0.81684 1.19185 1.20773 1.20736 0.92712 0.92014 0.92359 0.91105 0.92022 0.90004 0.86635 0.77550 0.82526 0.76675 0.90032 0.91224 0.94927 0.90467 0.82782 0.93714 0.89452 0.77461 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 3 C -0.05 -0.42 5.23 -27.89 -0.15 -0.57 16 4 C 0.08 0.79 6.63 -34.96 -0.23 0.56 16 5 O -0.18 -1.51 10.52 7.65 0.08 -1.43 16 6 C -0.04 -0.24 12.03 29.30 0.35 0.11 16 7 C -0.19 -1.37 10.60 -37.45 -0.40 -1.76 16 8 C -0.24 -2.46 6.31 -103.28 -0.65 -3.12 16 9 C 0.59 7.04 7.81 -12.54 -0.10 6.94 16 10 O -0.54 -7.95 14.84 5.27 0.08 -7.87 16 11 N -0.72 -7.21 5.55 -61.40 -0.34 -7.56 16 12 C 0.12 1.41 5.93 -4.04 -0.02 1.38 16 13 C 0.05 0.56 5.80 -3.83 -0.02 0.54 16 14 N -0.67 -10.52 6.13 -115.06 -0.70 -11.23 16 15 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 16 C 0.44 10.36 7.82 -10.98 -0.09 10.27 16 17 O -0.58 -15.88 15.78 5.55 0.09 -15.80 16 18 N -0.56 -14.24 5.29 -10.97 -0.06 -14.30 16 19 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 23 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.12 1.15 6.46 -51.93 -0.34 0.82 16 34 H 0.21 0.48 8.06 -52.48 -0.42 0.05 16 35 H 0.16 0.73 7.74 -52.49 -0.41 0.32 16 36 H 0.40 2.91 7.64 -40.82 -0.31 2.60 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.35 5.78 8.43 -39.29 -0.33 5.45 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -34.08 386.77 -7.41 -41.49 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -6.71 Total: 13.10 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.37 Total: 5.46 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.38 Total: -56.81 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.25 Total: -25.09 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.08 -7.41 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147749709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.898 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds