Wall clock time and date at job start Fri Apr 10 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47258 * 2 1 4 4 C 1.50697 * 109.47313 * 180.02562 * 3 2 1 5 5 O 1.33648 * 125.80034 * 269.97741 * 4 3 2 6 6 C 1.34222 * 110.90963 * 180.02562 * 5 4 3 7 7 C 1.34179 * 109.12131 * 359.97438 * 6 5 4 8 8 C 1.36423 * 125.80158 * 90.34727 * 4 3 2 9 9 C 1.47375 * 127.19268 * 359.97438 * 8 4 3 10 10 O 1.21614 * 120.00379 * 0.16941 * 9 8 4 11 11 N 1.34771 * 119.99946 * 180.17268 * 9 8 4 12 12 C 1.46501 * 120.00313 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47600 * 179.97438 * 12 11 9 14 14 N 1.46894 * 109.47110 * 179.97438 * 13 12 11 15 15 C 1.46903 * 110.99915 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47218 * 180.02562 * 15 14 13 17 17 O 1.21293 * 120.00278 * 359.97438 * 16 15 14 18 18 N 1.34784 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00006 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00010 * 359.97438 * 19 18 16 21 21 C 1.38944 * 119.99819 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00464 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99980 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47050 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47140 * 119.99864 * 23 21 19 26 26 H 1.48504 * 109.46915 * 240.00090 * 23 21 19 27 27 H 1.09003 * 109.46806 * 300.00496 * 1 2 3 28 28 H 1.08997 * 109.47224 * 59.99633 * 1 2 3 29 29 H 1.08993 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46899 * 239.99985 * 2 1 3 31 31 H 1.08998 * 109.46728 * 120.00210 * 2 1 3 32 32 H 1.08998 * 109.47611 * 59.99515 * 3 2 1 33 33 H 1.09005 * 109.47043 * 300.00340 * 3 2 1 34 34 H 1.08003 * 125.43772 * 179.97438 * 6 5 4 35 35 H 1.08002 * 127.01820 * 179.97438 * 7 6 5 36 36 H 0.97003 * 120.00464 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46840 * 300.00112 * 12 11 9 38 38 H 1.08998 * 109.47265 * 59.99588 * 12 11 9 39 39 H 1.08992 * 109.46983 * 300.00322 * 13 12 11 40 40 H 1.09006 * 109.46784 * 59.99925 * 13 12 11 41 41 H 1.00900 * 110.99893 * 56.05503 * 14 13 12 42 42 H 1.09001 * 109.46992 * 300.00735 * 15 14 13 43 43 H 1.09000 * 109.47226 * 60.00331 * 15 14 13 44 44 H 0.96996 * 119.99601 * 359.97438 * 18 16 15 45 45 H 0.97001 * 120.00401 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.3293 1.4427 1.0830 6 6 5.6263 1.4432 0.7375 7 6 5.7247 1.4427 -0.6006 8 6 4.3446 1.4493 -1.1074 9 6 3.9130 1.4576 -2.5165 10 8 2.7279 1.4619 -2.7895 11 7 4.8316 1.4603 -3.5026 12 6 4.4027 1.4679 -4.9034 13 6 5.6325 1.4701 -5.8135 14 7 5.2023 1.4772 -7.2180 15 6 6.3594 1.4789 -8.1231 16 6 5.8798 1.4868 -9.5517 17 8 4.6910 1.4900 -9.7923 18 7 6.7718 1.4891 -10.5621 19 6 6.3355 1.4968 -11.8617 20 1 5.2770 1.5005 -12.0759 21 6 7.2552 1.4997 -12.9032 22 7 8.5432 1.4956 -12.6426 23 14 6.6607 1.5094 -14.6741 24 1 5.1759 1.5122 -14.6978 25 1 7.1694 2.7241 -15.3604 26 1 7.1641 0.2990 -15.3719 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 6.4579 1.4439 1.4267 35 1 6.6324 1.4433 -1.1859 36 1 5.7769 1.4571 -3.2850 37 1 3.8030 0.5801 -5.1045 38 1 3.8068 2.3600 -5.0961 39 1 6.2318 2.3580 -5.6122 40 1 6.2287 0.5781 -5.6209 41 1 4.5946 2.2604 -7.4061 42 1 6.9639 2.3669 -7.9382 43 1 6.9604 0.5870 -7.9462 44 1 7.7225 1.4861 -10.3696 45 1 9.1852 1.4973 -13.3698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147749709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:50 Heat of formation + Delta-G solvation = -98.559368 kcal Electronic energy + Delta-G solvation = -25698.775086 eV Core-core repulsion = 21716.273638 eV Total energy + Delta-G solvation = -3982.501449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.56628 -40.54022 -40.13552 -37.51811 -36.23012 -35.95315 -35.21834 -33.81922 -33.26614 -31.27178 -30.61108 -27.99620 -27.20143 -25.73202 -24.21636 -23.12918 -22.74161 -21.89135 -21.10393 -20.78084 -19.92097 -18.93048 -17.81406 -17.33016 -17.16682 -17.08174 -16.85296 -16.51278 -16.14817 -16.04574 -15.88545 -15.59385 -15.26894 -14.86183 -14.83421 -14.39579 -14.10306 -14.01596 -13.95691 -13.66880 -13.52802 -13.31300 -12.94102 -12.89283 -12.60759 -12.44798 -12.41004 -12.37305 -12.21491 -12.11757 -11.66595 -11.52030 -11.10943 -10.84505 -10.37306 -10.17060 -10.01878 -9.54493 -9.39473 -8.47369 -5.95931 0.30254 1.13730 1.36511 1.42133 1.56177 1.78037 2.04483 2.10959 2.29647 2.30842 3.02814 3.20032 3.53410 3.55126 3.74573 3.83563 3.94194 4.02821 4.08978 4.10622 4.31098 4.31589 4.45089 4.48575 4.51264 4.60807 4.67770 4.73808 4.80524 4.87922 4.90214 4.95046 4.97532 5.19992 5.22972 5.31656 5.38184 5.41072 5.42502 5.83703 6.04056 6.06622 6.31270 6.51444 6.59782 7.12451 7.18175 7.55718 8.11402 8.70114 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027361 B = 0.001672 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.114582 B =16746.546298 C =17629.511045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.049 4.049 4 C 0.070 3.930 5 O -0.181 6.181 6 C -0.030 4.030 7 C -0.197 4.197 8 C -0.266 4.266 9 C 0.583 3.417 10 O -0.575 6.575 11 N -0.707 5.707 12 C 0.130 3.870 13 C 0.059 3.941 14 N -0.686 5.686 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.271 1.271 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.249 0.751 35 H 0.183 0.817 36 H 0.415 0.585 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.346 0.654 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.398 0.602 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 0.127 31.394 31.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.086 4.086 4 C 0.017 3.983 5 O -0.077 6.077 6 C -0.095 4.095 7 C -0.215 4.215 8 C -0.271 4.271 9 C 0.372 3.628 10 O -0.457 6.457 11 N -0.360 5.360 12 C 0.006 3.994 13 C -0.070 4.070 14 N -0.319 5.319 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.196 1.196 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.265 0.735 35 H 0.201 0.799 36 H 0.252 0.748 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.165 0.835 42 H 0.091 0.909 43 H 0.127 0.873 44 H 0.232 0.768 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.008 -0.550 31.149 31.299 hybrid contribution 1.154 0.883 -1.163 1.861 sum -1.854 0.333 29.987 30.046 Atomic orbital electron populations 1.21729 0.93979 1.02508 1.02340 1.21388 0.97213 0.94411 1.01786 1.20494 0.83321 0.99680 1.05114 1.23013 0.94350 0.97538 0.83434 1.83794 1.18162 1.71100 1.34656 1.24740 0.83378 1.04344 0.97010 1.23193 0.96024 1.07053 0.95270 1.21221 0.95306 1.17767 0.92806 1.17526 0.85140 0.75405 0.84734 1.90761 1.18097 1.52153 1.84667 1.45495 1.10381 1.74889 1.05211 1.21062 0.96961 1.01991 0.79428 1.22056 0.95758 1.02895 0.86278 1.59893 1.17774 1.51649 1.02561 1.21529 0.92923 1.03648 0.88314 1.20936 0.86320 0.82231 0.88247 1.90505 1.18271 1.56666 1.85749 1.41920 1.08852 1.65001 1.05180 1.19698 0.93937 1.49910 0.82867 0.90445 1.26023 0.94991 0.96262 1.03932 1.69668 1.01151 1.50317 1.34847 0.84878 0.78143 0.78357 0.76991 1.19956 1.19512 1.19589 0.91092 0.93238 0.91810 0.93550 0.90972 0.88107 0.88704 0.73473 0.79943 0.74782 0.92228 0.92383 0.92460 0.88844 0.83528 0.90881 0.87255 0.76832 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 71.98 0.71 -1.36 16 2 C -0.11 -1.83 5.92 30.59 0.18 -1.64 16 3 C -0.05 -0.85 5.23 29.85 0.16 -0.70 16 4 C 0.07 1.32 6.63 25.26 0.17 1.49 16 5 O -0.18 -2.80 10.52 4.44 0.05 -2.75 16 6 C -0.03 -0.29 12.03 66.89 0.80 0.52 16 7 C -0.20 -2.35 10.60 23.65 0.25 -2.10 16 8 C -0.27 -5.23 6.31 -18.99 -0.12 -5.35 16 9 C 0.58 14.11 7.81 86.65 0.68 14.79 16 10 O -0.58 -18.03 14.84 -4.07 -0.06 -18.09 16 11 N -0.71 -13.53 5.55 -466.42 -2.59 -16.11 16 12 C 0.13 2.97 5.93 86.38 0.51 3.48 16 13 C 0.06 1.22 5.80 86.30 0.50 1.72 16 14 N -0.69 -20.94 6.13 -517.94 -3.17 -24.11 16 15 C 0.07 2.22 6.17 85.56 0.53 2.74 16 16 C 0.44 20.58 7.82 87.66 0.69 21.26 16 17 O -0.63 -35.05 15.78 -3.07 -0.05 -35.10 16 18 N -0.57 -29.16 5.29 -306.98 -1.62 -30.78 16 19 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.65 5.50 84.92 0.47 -0.19 16 22 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 23 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 2.05 6.46 -2.38 -0.02 2.04 16 34 H 0.25 0.02 8.06 -2.91 -0.02 0.00 16 35 H 0.18 1.05 7.74 -2.91 -0.02 1.03 16 36 H 0.42 5.11 7.64 -92.71 -0.71 4.40 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.35 11.31 8.43 -89.69 -0.76 10.55 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.11 3.12 8.14 -2.39 -0.02 3.11 16 44 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 45 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -76.41 386.77 0.04 -76.37 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: -1.16 Total: 38.02 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 6.34 Total: 16.43 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -7.10 Total: -119.91 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.06 Total: -55.93 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -76.41 0.04 -76.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147749709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.187 kcal (2) G-P(sol) polarization free energy of solvation -76.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds