Wall clock time and date at job start Fri Apr 10 2020 18:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 C 1.50697 * 109.47502 * 120.00247 * 2 1 3 5 5 O 1.33648 * 125.80034 * 299.97738 * 4 2 1 6 6 C 1.34222 * 110.90963 * 180.02562 * 5 4 2 7 7 C 1.34179 * 109.12131 * 359.97438 * 6 5 4 8 8 C 1.36423 * 125.80158 * 120.34724 * 4 2 1 9 9 C 1.47375 * 127.19268 * 359.97438 * 8 4 2 10 10 O 1.21614 * 120.00379 * 0.16941 * 9 8 4 11 11 N 1.34771 * 119.99946 * 180.17268 * 9 8 4 12 12 C 1.46501 * 120.00313 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47600 * 179.97438 * 12 11 9 14 14 N 1.46894 * 109.47110 * 179.97438 * 13 12 11 15 15 C 1.46903 * 110.99915 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47218 * 180.02562 * 15 14 13 17 17 O 1.21293 * 120.00278 * 359.97438 * 16 15 14 18 18 N 1.34784 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00006 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00010 * 359.97438 * 19 18 16 21 21 C 1.38944 * 119.99819 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00464 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99980 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47050 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47140 * 119.99864 * 23 21 19 26 26 H 1.48504 * 109.46915 * 240.00090 * 23 21 19 27 27 H 1.08999 * 109.47190 * 300.00020 * 1 2 3 28 28 H 1.09004 * 109.47315 * 59.99799 * 1 2 3 29 29 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46877 * 240.00570 * 2 1 3 31 31 H 1.09003 * 109.47628 * 300.00013 * 3 2 1 32 32 H 1.08997 * 109.47281 * 60.00665 * 3 2 1 33 33 H 1.09001 * 109.47334 * 180.02562 * 3 2 1 34 34 H 1.08003 * 125.43772 * 179.97438 * 6 5 4 35 35 H 1.08002 * 127.01820 * 179.97438 * 7 6 5 36 36 H 0.97003 * 120.00464 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46840 * 300.00112 * 12 11 9 38 38 H 1.08998 * 109.47265 * 59.99588 * 12 11 9 39 39 H 1.08992 * 109.46983 * 300.00322 * 13 12 11 40 40 H 1.09006 * 109.46784 * 59.99925 * 13 12 11 41 41 H 1.00900 * 110.99893 * 56.05503 * 14 13 12 42 42 H 1.09001 * 109.46992 * 300.00735 * 15 14 13 43 43 H 1.09000 * 109.47226 * 60.00331 * 15 14 13 44 44 H 0.96996 * 119.99601 * 359.97438 * 18 16 15 45 45 H 0.97001 * 120.00401 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7824 -0.3561 2.4946 6 6 2.3778 -1.1973 3.3545 7 6 3.0410 -2.1364 2.6626 8 6 2.8255 -1.8204 1.2431 9 6 3.3526 -2.5520 0.0774 10 8 3.0900 -2.1732 -1.0480 11 7 4.1258 -3.6409 0.2586 12 6 4.6494 -4.3686 -0.9000 13 6 5.4901 -5.5537 -0.4208 14 7 6.0146 -6.2836 -1.5827 15 6 6.8282 -7.4314 -1.1599 16 6 7.3483 -8.1536 -2.3760 17 8 7.0683 -7.7521 -3.4858 18 7 8.1237 -9.2464 -2.2305 19 6 8.5972 -9.9032 -3.3368 20 1 8.3486 -9.5451 -4.3249 21 6 9.3970 -11.0294 -3.1868 22 7 9.7000 -11.4648 -1.9845 23 14 10.0417 -11.9247 -4.6942 24 1 9.5604 -11.2393 -5.9205 25 1 11.5266 -11.9209 -4.6749 26 1 9.5501 -13.3260 -4.6856 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 2.3306 -1.1292 4.4313 35 1 3.6198 -2.9541 3.0662 36 1 4.3356 -3.9429 1.1562 37 1 3.8195 -4.7327 -1.5058 38 1 5.2702 -3.7014 -1.4979 39 1 6.3199 -5.1893 0.1847 40 1 4.8695 -6.2211 0.1773 41 1 6.5403 -5.6706 -2.1876 42 1 7.6675 -7.0803 -0.5596 43 1 6.2167 -8.1115 -0.5669 44 1 8.3473 -9.5677 -1.3430 45 1 10.2581 -12.2512 -1.8798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153031893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:07 Heat of formation + Delta-G solvation = -69.566214 kcal Electronic energy + Delta-G solvation = -25797.345967 eV Core-core repulsion = 21816.101756 eV Total energy + Delta-G solvation = -3981.244211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.97876 -39.61992 -38.32352 -36.41858 -35.77549 -34.36870 -33.78536 -33.13415 -31.24373 -29.75102 -29.15815 -27.54692 -26.20786 -24.36041 -23.32190 -22.87409 -22.11302 -20.83004 -19.97689 -19.27184 -18.13039 -17.89323 -16.60074 -16.37894 -16.16468 -16.00041 -15.82340 -15.26510 -15.04234 -14.90623 -14.53533 -14.24036 -13.89808 -13.84296 -13.48613 -13.43585 -13.39151 -13.15831 -12.98740 -12.57464 -12.42438 -11.93695 -11.67033 -11.61426 -11.53124 -11.46206 -11.43524 -11.33226 -11.05572 -10.34513 -10.23453 -10.19089 -10.08196 -9.53123 -9.28489 -8.93561 -8.51303 -8.13881 -7.97472 -6.42843 -3.83622 1.04829 1.67392 2.41234 2.94896 3.13248 3.16120 3.26897 3.34525 3.88964 4.02622 4.11838 4.35905 4.41125 4.48172 4.59411 4.71597 4.84588 4.95664 4.98899 5.08061 5.17058 5.23746 5.24668 5.26177 5.38273 5.42772 5.45876 5.55789 5.71644 5.71755 5.81348 5.83584 5.86748 5.90765 5.94021 5.95212 6.20864 6.27075 6.66418 7.08780 7.30080 7.54755 7.56249 8.02566 8.05348 8.59885 9.16962 9.52782 10.04087 10.74927 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034447 B = 0.001637 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.658750 B =17099.638035 C =17708.597226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.037 4.037 3 C -0.146 4.146 4 C 0.091 3.909 5 O -0.173 6.173 6 C -0.039 4.039 7 C -0.189 4.189 8 C -0.246 4.246 9 C 0.591 3.409 10 O -0.539 6.539 11 N -0.720 5.720 12 C 0.121 3.879 13 C 0.049 3.951 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.133 0.867 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.208 0.792 35 H 0.157 0.843 36 H 0.400 0.600 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.353 0.647 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.637 22.037 14.924 30.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.055 4.055 3 C -0.203 4.203 4 C 0.038 3.962 5 O -0.069 6.069 6 C -0.105 4.105 7 C -0.208 4.208 8 C -0.251 4.251 9 C 0.379 3.621 10 O -0.418 6.418 11 N -0.372 5.372 12 C -0.003 4.003 13 C -0.081 4.081 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.224 0.776 35 H 0.175 0.825 36 H 0.234 0.766 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.616 22.255 13.401 30.311 hybrid contribution 1.672 -0.821 1.007 2.118 sum -13.944 21.434 14.409 29.350 Atomic orbital electron populations 1.21844 0.93309 1.02596 1.02588 1.20366 0.96708 0.96448 0.91996 1.21844 1.01618 0.94269 1.02589 1.22876 0.95314 0.94028 0.84033 1.83758 1.59688 1.48232 1.15188 1.23878 0.99285 0.91755 0.95590 1.22868 1.04488 1.02107 0.91374 1.21148 1.08834 1.01290 0.93802 1.17143 0.77828 0.79730 0.87419 1.90733 1.59286 1.67347 1.24429 1.45675 1.52082 1.29082 1.10333 1.21304 0.98698 0.92626 0.87637 1.22076 0.97793 0.94699 0.93514 1.59928 1.42615 1.10966 1.16339 1.21672 0.95897 0.93553 0.96912 1.19778 0.83851 0.83868 0.89973 1.90536 1.61628 1.68079 1.26322 1.41862 1.44108 1.24357 1.09699 1.19767 1.27156 1.07586 0.88338 0.87810 1.25268 0.97355 0.97324 0.98031 1.69618 1.37997 1.25281 1.21443 0.85791 0.78301 0.78988 0.81218 1.19186 1.20773 1.20735 0.92288 0.91245 0.92153 0.84962 0.91244 0.92288 0.92192 0.77561 0.82524 0.76624 0.89994 0.91186 0.94915 0.90454 0.82777 0.93711 0.89449 0.77461 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.18 37.15 0.34 -0.72 16 2 C -0.04 -0.33 3.25 -91.78 -0.30 -0.63 16 3 C -0.15 -1.06 9.18 37.16 0.34 -0.71 16 4 C 0.09 0.89 5.88 -34.96 -0.21 0.68 16 5 O -0.17 -1.49 10.52 7.65 0.08 -1.41 16 6 C -0.04 -0.25 12.03 29.30 0.35 0.10 16 7 C -0.19 -1.38 10.60 -37.45 -0.40 -1.77 16 8 C -0.25 -2.53 6.31 -103.28 -0.65 -3.18 16 9 C 0.59 7.16 7.81 -12.54 -0.10 7.06 16 10 O -0.54 -8.13 14.50 5.27 0.08 -8.05 16 11 N -0.72 -7.24 5.55 -61.40 -0.34 -7.58 16 12 C 0.12 1.40 5.93 -4.04 -0.02 1.38 16 13 C 0.05 0.56 5.80 -3.83 -0.02 0.54 16 14 N -0.67 -10.52 6.13 -115.06 -0.70 -11.23 16 15 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 16 C 0.44 10.36 7.82 -10.98 -0.09 10.27 16 17 O -0.58 -15.88 15.78 5.55 0.09 -15.79 16 18 N -0.56 -14.24 5.29 -10.97 -0.06 -14.30 16 19 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 23 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.13 1.45 5.52 -51.93 -0.29 1.16 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.21 0.48 8.06 -52.48 -0.42 0.06 16 35 H 0.16 0.73 7.74 -52.49 -0.41 0.32 16 36 H 0.40 2.92 7.64 -40.82 -0.31 2.60 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.35 5.78 8.43 -39.29 -0.33 5.45 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -34.16 385.29 -7.04 -41.20 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -6.67 Total: 13.17 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.02 Total: 5.88 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.38 Total: -56.84 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: 0.24 Total: -25.26 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.16 -7.04 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153031893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.368 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds