Wall clock time and date at job start Fri Apr 10 2020 18:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 C 1.50697 * 109.47502 * 120.00247 * 2 1 3 5 5 O 1.33648 * 125.80034 * 299.97738 * 4 2 1 6 6 C 1.34222 * 110.90963 * 180.02562 * 5 4 2 7 7 C 1.34179 * 109.12131 * 359.97438 * 6 5 4 8 8 C 1.36423 * 125.80158 * 120.34724 * 4 2 1 9 9 C 1.47375 * 127.19268 * 359.97438 * 8 4 2 10 10 O 1.21614 * 120.00379 * 0.16941 * 9 8 4 11 11 N 1.34771 * 119.99946 * 180.17268 * 9 8 4 12 12 C 1.46501 * 120.00313 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47600 * 179.97438 * 12 11 9 14 14 N 1.46894 * 109.47110 * 179.97438 * 13 12 11 15 15 C 1.46903 * 110.99915 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47218 * 180.02562 * 15 14 13 17 17 O 1.21293 * 120.00278 * 359.97438 * 16 15 14 18 18 N 1.34784 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00006 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00010 * 359.97438 * 19 18 16 21 21 C 1.38944 * 119.99819 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00464 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99980 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47050 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47140 * 119.99864 * 23 21 19 26 26 H 1.48504 * 109.46915 * 240.00090 * 23 21 19 27 27 H 1.08999 * 109.47190 * 300.00020 * 1 2 3 28 28 H 1.09004 * 109.47315 * 59.99799 * 1 2 3 29 29 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46877 * 240.00570 * 2 1 3 31 31 H 1.09003 * 109.47628 * 300.00013 * 3 2 1 32 32 H 1.08997 * 109.47281 * 60.00665 * 3 2 1 33 33 H 1.09001 * 109.47334 * 180.02562 * 3 2 1 34 34 H 1.08003 * 125.43772 * 179.97438 * 6 5 4 35 35 H 1.08002 * 127.01820 * 179.97438 * 7 6 5 36 36 H 0.97003 * 120.00464 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46840 * 300.00112 * 12 11 9 38 38 H 1.08998 * 109.47265 * 59.99588 * 12 11 9 39 39 H 1.08992 * 109.46983 * 300.00322 * 13 12 11 40 40 H 1.09006 * 109.46784 * 59.99925 * 13 12 11 41 41 H 1.00900 * 110.99893 * 56.05503 * 14 13 12 42 42 H 1.09001 * 109.46992 * 300.00735 * 15 14 13 43 43 H 1.09000 * 109.47226 * 60.00331 * 15 14 13 44 44 H 0.96996 * 119.99601 * 359.97438 * 18 16 15 45 45 H 0.97001 * 120.00401 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7824 -0.3561 2.4946 6 6 2.3778 -1.1973 3.3545 7 6 3.0410 -2.1364 2.6626 8 6 2.8255 -1.8204 1.2431 9 6 3.3526 -2.5520 0.0774 10 8 3.0900 -2.1732 -1.0480 11 7 4.1258 -3.6409 0.2586 12 6 4.6494 -4.3686 -0.9000 13 6 5.4901 -5.5537 -0.4208 14 7 6.0146 -6.2836 -1.5827 15 6 6.8282 -7.4314 -1.1599 16 6 7.3483 -8.1536 -2.3760 17 8 7.0683 -7.7521 -3.4858 18 7 8.1237 -9.2464 -2.2305 19 6 8.5972 -9.9032 -3.3368 20 1 8.3486 -9.5451 -4.3249 21 6 9.3970 -11.0294 -3.1868 22 7 9.7000 -11.4648 -1.9845 23 14 10.0417 -11.9247 -4.6942 24 1 9.5604 -11.2393 -5.9205 25 1 11.5266 -11.9209 -4.6749 26 1 9.5501 -13.3260 -4.6856 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 2.3306 -1.1292 4.4313 35 1 3.6198 -2.9541 3.0662 36 1 4.3356 -3.9429 1.1562 37 1 3.8195 -4.7327 -1.5058 38 1 5.2702 -3.7014 -1.4979 39 1 6.3199 -5.1893 0.1847 40 1 4.8695 -6.2211 0.1773 41 1 6.5403 -5.6706 -2.1876 42 1 7.6675 -7.0803 -0.5596 43 1 6.2167 -8.1115 -0.5669 44 1 8.3473 -9.5677 -1.3430 45 1 10.2581 -12.2512 -1.8798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153031893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:05 Heat of formation + Delta-G solvation = -95.986153 kcal Electronic energy + Delta-G solvation = -25798.491621 eV Core-core repulsion = 21816.101756 eV Total energy + Delta-G solvation = -3982.389866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.59491 -40.56856 -40.13790 -37.54094 -36.50058 -35.97919 -35.23263 -33.83385 -33.26578 -30.70962 -29.97133 -28.12266 -27.76934 -25.87684 -24.37438 -23.45586 -23.06559 -21.58712 -21.10732 -20.69017 -19.91918 -18.81734 -17.79302 -17.32802 -17.17349 -17.12534 -16.80713 -16.50867 -16.14789 -15.96402 -15.82797 -15.51916 -15.27191 -14.89774 -14.84242 -14.37170 -14.07927 -13.99479 -13.96898 -13.58506 -13.52832 -13.31723 -13.10536 -12.94260 -12.61199 -12.44035 -12.40246 -12.26144 -12.23006 -12.11711 -12.00880 -11.51966 -11.01203 -10.85242 -10.37233 -10.18945 -10.01815 -9.55799 -9.39499 -8.47328 -5.95892 0.30335 1.13533 1.36571 1.42196 1.56230 1.77101 2.04553 2.10489 2.28298 2.30825 3.02618 3.20090 3.47483 3.54339 3.73265 3.80667 3.92101 4.00630 4.09734 4.10623 4.31404 4.34352 4.44966 4.49659 4.56179 4.60991 4.68496 4.71265 4.85563 4.86100 4.89512 4.92637 4.96853 5.11330 5.25240 5.25372 5.32751 5.41151 5.45733 5.83654 6.04612 6.06697 6.31229 6.49587 6.59833 7.12507 7.16209 7.55781 8.11470 8.70159 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034447 B = 0.001637 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.658750 B =17099.638035 C =17708.597226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C -0.141 4.141 4 C 0.079 3.921 5 O -0.178 6.178 6 C -0.031 4.031 7 C -0.196 4.196 8 C -0.270 4.270 9 C 0.584 3.416 10 O -0.579 6.579 11 N -0.706 5.706 12 C 0.129 3.871 13 C 0.059 3.941 14 N -0.686 5.686 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.271 1.271 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.249 0.751 35 H 0.184 0.816 36 H 0.416 0.584 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.346 0.654 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.398 0.602 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.632 22.174 17.471 31.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.060 4.060 3 C -0.198 4.198 4 C 0.025 3.975 5 O -0.074 6.074 6 C -0.096 4.096 7 C -0.214 4.214 8 C -0.275 4.275 9 C 0.374 3.626 10 O -0.461 6.461 11 N -0.358 5.358 12 C 0.005 3.995 13 C -0.070 4.070 14 N -0.319 5.319 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.196 1.196 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.265 0.735 35 H 0.201 0.799 36 H 0.253 0.747 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.165 0.835 42 H 0.091 0.909 43 H 0.128 0.872 44 H 0.232 0.768 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.605 22.378 16.024 31.640 hybrid contribution 1.634 -0.819 0.266 1.847 sum -13.971 21.559 16.290 30.420 Atomic orbital electron populations 1.21812 0.92169 1.02215 1.03623 1.20323 0.97673 0.96972 0.91014 1.21811 1.00921 0.93437 1.03618 1.23000 0.95505 0.94194 0.84754 1.83768 1.59933 1.48800 1.14879 1.24745 0.97517 0.90406 0.96926 1.23182 1.05254 1.03364 0.89644 1.21216 1.09783 1.01831 0.94670 1.17530 0.77610 0.79941 0.87549 1.90715 1.60773 1.68478 1.26114 1.45487 1.51291 1.28291 1.10717 1.21078 0.97793 0.92688 0.87964 1.22055 0.98435 0.94301 0.92190 1.59892 1.42391 1.11250 1.18345 1.21530 0.97261 0.93834 0.93790 1.20936 0.82266 0.83039 0.91496 1.90505 1.62785 1.69023 1.28873 1.41919 1.44755 1.25030 1.09247 1.19700 1.29203 1.09208 0.88316 0.90444 1.26021 0.96873 0.97366 1.00933 1.69668 1.37978 1.25612 1.22728 0.84877 0.78112 0.77889 0.77487 1.19961 1.19514 1.19589 0.91330 0.90079 0.93213 0.87549 0.90081 0.91338 0.93212 0.73471 0.79902 0.74713 0.92160 0.92349 0.92442 0.88809 0.83523 0.90876 0.87246 0.76832 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.18 71.98 0.66 -1.37 16 2 C -0.04 -0.76 3.25 -11.54 -0.04 -0.80 16 3 C -0.14 -2.01 9.18 71.98 0.66 -1.35 16 4 C 0.08 1.53 5.88 25.26 0.15 1.67 16 5 O -0.18 -2.78 10.52 4.44 0.05 -2.73 16 6 C -0.03 -0.30 12.03 66.89 0.80 0.50 16 7 C -0.20 -2.38 10.60 23.65 0.25 -2.13 16 8 C -0.27 -5.41 6.31 -18.99 -0.12 -5.53 16 9 C 0.58 14.36 7.81 86.65 0.68 15.04 16 10 O -0.58 -18.47 14.50 -4.07 -0.06 -18.53 16 11 N -0.71 -13.58 5.55 -466.42 -2.59 -16.17 16 12 C 0.13 2.96 5.93 86.38 0.51 3.47 16 13 C 0.06 1.22 5.80 86.30 0.50 1.72 16 14 N -0.69 -20.92 6.13 -517.94 -3.17 -24.09 16 15 C 0.07 2.21 6.17 85.56 0.53 2.74 16 16 C 0.44 20.57 7.82 87.66 0.69 21.26 16 17 O -0.63 -35.03 15.78 -3.07 -0.05 -35.08 16 18 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 19 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 22 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 23 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 2.53 5.52 -2.38 -0.01 2.51 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.25 0.06 8.06 -2.91 -0.02 0.04 16 35 H 0.18 1.07 7.74 -2.91 -0.02 1.04 16 36 H 0.42 5.13 7.64 -92.71 -0.71 4.42 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.35 11.30 8.43 -89.69 -0.76 10.54 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 45 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -76.63 385.29 0.26 -76.37 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -1.16 Total: 38.08 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 6.55 Total: 16.80 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -7.10 Total: -119.93 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -0.06 Total: -56.34 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -76.63 0.26 -76.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153031893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.614 kcal (2) G-P(sol) polarization free energy of solvation -76.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds